BAC Information

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BAC

Clone NameB6Ng01-329H24
Chromosome10 (Build37)
Map Location 60,556,874 - 60,557,999
singlet/doubletsinglet
Overlap genePcbd1
Upstream geneAscc1, Spock2, Chst3, LOC100039080, Psap, Cdh23, 4632428N05Rik, Slc29a3, Unc5b
Downstream geneSgpl1, 1700021K02Rik, Adamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329H24.bB6Ng01-329H24.g
ACCGA116445GA116446
length1,129403
definitionB6Ng01-329H24.b B6Ng01-329H24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctagccagggatctgacctatataaactggcccttaactgcttt
agtagcatagtccatcagtccctacactaccttgtgttttcctgtagagt
agcagcaggcaagccctactaagtccttttcctaagactgagaattgtag
ctgtcagaaccagaggtcttaagatggttttggtcccagtgtactagaga
gtgtattggaagatcagaatgcacagaaggggacttcgggtgaggaactg
gttccaatgataatggaagtcacgttggctagctggaggaggagttccag
cctagagctcaagacccatgaagtcaggaaagaactgatatcccaactca
aacaggagtccagacttccatctgaaggagaaatggcaggctttttgctc
tatataatacgccttcaactgattgaatggagctcacctaggctcattcc
tacagaatcagccttgagaggaggaggaaaataatggtggcaatctgcct
ttttagatgtgggttcacatgctgtgtatacgttcccctccggctgatgc
cccagcagcagttctggtctctgaggcctaactggcatccttccttgtta
ccctagtcacttctttgtatccccttagctcgcgactcatcctgtctagt
aaccgtctaaatgccctacacgacaatgaacctgaaggtagagtgctttg
ccctctcccattccctcagtaccgtggacctacctggcttcctacccagg
ataagtgcttccattcagttgcatttgactgaggacaggctcagtgcctt
agttggccgagtgtgtgcaaagaaagccgtggttctgatccccagagcca
caaaaacagaaccgacccctaaaaatcaaacggggatagattctgggttc
agcggaaaagaaaggttctagaagctgagcccatcgataacatagttttt
attggaggcgtaaaagcacatgtttccataatacattgggagcttgtttt
attagtaggaatctgaattgggcttttatgtcatgctttatcacagctac
ttggtaaatgaaactagaaaaggtagaaaagtatcaagagcagctggaac
attactgagcttggtactctacaggaaaa
tttgtttagctctgagccccatttttaatggggttatttgattttctgga
gtccaccttcttgagttctttatatatattggatattagtcccctatctg
atttaggataggtaaagatcctttcccaatctgttggtggcctttttgtc
ttattgatggtgtcttttgccttgcagagctagagaaagaatccaaggag
ctaaagagatctgcaaccctgtaggtgcaacaacatcatgaactaaccag
taccccggagctcttgactctagctgcatatgtatcaaaagatggcctag
tcggccatcactggaaagagaggcccattggacacgcaaactttatatgc
cccagtacaggggaacgccagggccaaaaagtgggaatgggtgggtaggg
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_60556874_60557999
seq2: B6Ng01-329H24.b_51_1179 (reverse)

seq1  TTTTTCTGTAGAGTTCCCAGCCTCAGTAATGTTCCAGGCTGCTTCTTGTT  50
      |||| ||||||||| || || ||||||||||||||| ||||| ||||| |
seq2  TTTTCCTGTAGAGTACCAAG-CTCAGTAATGTTCCA-GCTGC-TCTTGAT  47

seq1  CCTTTTCTACCCTTTCTAG-TTCATTTTCCAAGGTAGCTGTGATAAAGCA  99
       |||||||||| ||||||| ||||||| |||| |||||||||||||||||
seq2  ACTTTTCTACCTTTTCTAGTTTCATTTACCAA-GTAGCTGTGATAAAGCA  96

seq1  TGACATAAAAGCCCAATTCAGA-TCCTACTAATAAAACAAGCT-CCAATG  147
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  TGACATAAAAGCCCAATTCAGATTCCTACTAATAAAACAAGCTCCCAATG  146

seq1  TATTATGGAAACATGTGCTTTTACGCCTCCAAT-AAAACTATGTTATCGA  196
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATTATGGAAACATGTGCTTTTACGCCTCCAATAAAAACTATGTTATCGA  196

seq1  TGGGCTCAGCTTCTAGAACC-TTCTTTTCCGCTGAA-CCAGAATCTAT-C  243
      |||||||||||||||||||| ||||||||||||||| ||||||||||| |
seq2  TGGGCTCAGCTTCTAGAACCTTTCTTTTCCGCTGAACCCAGAATCTATCC  246

seq1  CCGTTTGATTTTTAGGGGTCGGTTCTGTTTTTGTGGCTCTGGGGATCAGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTGATTTTTAGGGGTCGGTTCTGTTTTTGTGGCTCTGGGGATCAGA  296

seq1  ACCACGGCTTTCTTTGCACACACTCGGCCAACTAAGGCACTGAGCCTGTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGCTTTCTTTGCACACACTCGGCCAACTAAGGCACTGAGCCTGTC  346

seq1  CTCAGTCAAATGCAACTGAATGGAAGCACTTATCCTGGGTAGGAAGCCAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCAAATGCAACTGAATGGAAGCACTTATCCTGGGTAGGAAGCCAG  396

seq1  GTAGGTCCACGGTACTGAGGGAATGGGAGAGGGCAAAGCACTCTACCTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTCCACGGTACTGAGGGAATGGGAGAGGGCAAAGCACTCTACCTTC  446

seq1  AGGTTCATTGTCGTGTAGGGCATTTAGACGGTTACTAGACAGGATGAGTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCATTGTCGTGTAGGGCATTTAGACGGTTACTAGACAGGATGAGTC  496

seq1  GCGAGCTAAGGGGATACAAAGAAGTGACTAGGGTAACAAGGAAGGATGCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCTAAGGGGATACAAAGAAGTGACTAGGGTAACAAGGAAGGATGCC  546

seq1  AGTTAGGCCTCAGAGACCAGAACTGCTGCTGGGGCATCAGCCGGAGGGGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGCCTCAGAGACCAGAACTGCTGCTGGGGCATCAGCCGGAGGGGA  596

seq1  ACGTATACACAGCATGTGAACCCACATCTAAAAAGGCAGATTGCCACCAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTATACACAGCATGTGAACCCACATCTAAAAAGGCAGATTGCCACCAT  646

seq1  TATTTTCCTCCTCCTCTCAAGGCTGATTCTGTAGGAATGAGCCTAGGTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTCCTCCTCTCAAGGCTGATTCTGTAGGAATGAGCCTAGGTGA  696

seq1  GCTCCATTCAATCAGTTGAAGGCGTATTATATAGAGCAAAAAGCCTGCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTCAATCAGTTGAAGGCGTATTATATAGAGCAAAAAGCCTGCCA  746

seq1  TTTCTCCTTCAGATGGAAGTCTGGACTCCTGTTTGAGTTGGGATATCAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTCAGATGGAAGTCTGGACTCCTGTTTGAGTTGGGATATCAGT  796

seq1  TCTTTCCTGACTTCATGGGTCTTGAGCTCTAGGCTGGAACTCCTCCTCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGACTTCATGGGTCTTGAGCTCTAGGCTGGAACTCCTCCTCCA  846

seq1  GCTAGCCAACGTGACTTCCATTATCATTGGAACCAGTTCCTCACCCGAAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAACGTGACTTCCATTATCATTGGAACCAGTTCCTCACCCGAAG  896

seq1  TCCCCTTCTGTGCATTCTGATCTTCCAATACACTCTCTAGTACACTGGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTCTGTGCATTCTGATCTTCCAATACACTCTCTAGTACACTGGGA  946

seq1  CCAAAACCATCTTAAGACCTCTGGTTCTGACAGCTACAATTCTCAGTCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCATCTTAAGACCTCTGGTTCTGACAGCTACAATTCTCAGTCTT  996

seq1  AGGAAAAGGACTTAGTAGGGCTTGCCTGCTGCTACTCTACAGGAAAACAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGGACTTAGTAGGGCTTGCCTGCTGCTACTCTACAGGAAAACAC  1046

seq1  AAGGTAGTGTAGGGACTGATGGACTATGCTACTAAAGCAGTTAAGGGCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGTGTAGGGACTGATGGACTATGCTACTAAAGCAGTTAAGGGCCA  1096

seq1  GTTTATATAGGTCAGATCCCTGGCTAGGAATTC  1126
      |||||||||||||||||||||||||||||||||
seq2  GTTTATATAGGTCAGATCCCTGGCTAGGAATTC  1129