BAC Information

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BAC

Clone NameB6Ng01-329N14
Chromosome10 (Build37)
Map Location 84,104,250 - 84,105,409
singlet/doubletsinglet
Overlap genePolr3b
Upstream geneAppl2, 1500009L16Rik, LOC100041225, C230099D08Rik, LOC432482, Nuak1, Ckap4, Tcp11l2
Downstream geneRfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329N14.bB6Ng01-329N14.g
ACCGA116697GA116698
length2491,142
definitionB6Ng01-329N14.b B6Ng01-329N14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactgctgttgtttagctaaattaataacaccaagctgccaccg
aaatattctttttatactcattgacaagtgcttttctttataatgaatgg
caatgaattaggagatccaaagaataatgtgataggcgagcatagtggtg
cacgcctttaatcccagcactcaggaagcagaggcaggaggatgtctggg
agttcaaggccaccctgtctacatagtgagttccaggacagtcagggct
gaattctgcccaagatcacatagctactaagtggagaagcagagatttag
gctactctgtgtgtctgtaaactctccaggaccctgcgctgccacccagg
gagagatgtgagaggtgataaaaacacaagttttcagcagtggactgaac
actcctgaaggggagacccagagtgacaactgtatgcgatcaaaagaaaa
gggggttaaatgcttatcttaaacgttagacactgcttgtcctatcaatt
aataaacacatttttggaaagtacattaataatgaccacatttcaaagtc
tcagcatgtgtctaagactgaaaacacctgagttgaaaaaaaaaaaagaa
aaatatacctaaaatcctactttaggaaactgaaaaataaattacacaca
taaaaatccctaacgatgaaggtgcagacagaagccatcgtctactgtaa
gtaaaatacaaataagttgttacgttcattacaagtcacaagaaaaagag
ctgtataacagaaacaagcttcaccctttagagcgtctcttcatttttca
actggctacatcataaaaacgacaaactgttaactcatagcctttctttt
ttttttagatagaatttaagtcagctatatctgtttatattttcaacata
aatattaaacaaatctgtaacaggagaaattgttttattaaactttggtc
atgtagataaaaaaaggaatgttaaaagctttccagatttttaatccatg
tatgcatctcattacacatggtaaaaagatcatatactttctgtgtaatt
aacactcttagtctaaaaacagaaatgctattcacattcaaaaactttgg
gggaaaaaaaaaagtcccatggatacatggagacatactgctctctgctg
aagataataattcgaagctggcaaataacatttctccatcattgtgtatg
tacatgagacacttgggagctgtagattctctagaaagcatcacacagac
ttgttatatatatacacacccaaccgcacaccagactacatcacacaccc
aacccacctcattcttctggtgcgtgacattcaccttcagaatgtagacg
cgactgtgtgagactctcttgactactgatgaaatggtcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_84104250_84105409
seq2: B6Ng01-329N14.g_64_1205 (reverse)

seq1  GAGGACCATTTCATCAGTAGTCCAGAGAGTCTCACACATGTCTGCTGTCT  50
      |||||||||||||||||||||| ||||||||||||||| ||| || ||||
seq2  GAGGACCATTTCATCAGTAGTCAAGAGAGTCTCACACA-GTC-GC-GTCT  47

seq1  TCCTTTCTTTGAAGTTTGGATGTTCACGCA-CAGAAGGAATTGTGTGTGT  99
       | |   | |||||  || ||| ||||||| ||||| ||||   |||   
seq2  ACAT---TCTGAAG-GTGAATG-TCACGCACCAGAA-GAATGAGGTG---  88

seq1  GTTTGTGTGTGTG-TGT-GTGTGTGTGTGTGTGTGTGTGTGTGTATTATA  147
      | ||| ||||||| ||| || || ||||| |  || |||||| |||    
seq2  GGTTGGGTGTGTGATGTAGTCTG-GTGTGCGGTTGGGTGTGTATAT----  133

seq1  ATATAACAAGTCTGTGTGATGGCTTTTCTTAGAGGAATCCTACAGCTCCC  197
      |||||||||||||||||||| |||||   |||| |||| |||||||||||
seq2  ATATAACAAGTCTGTGTGAT-GCTTT--CTAGA-GAAT-CTACAGCTCCC  178

seq1  AAAGTGTCTCATGTACATACACAATGATGGAGAAATGTTATTTGCCAGCT  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAGTGTCTCATGTACATACACAATGATGGAGAAATGTTATTTGCCAGCT  227

seq1  TCGAATTA-TATCTTCAGCAGAGGGCAGTATGTCTCCATGTATCCATGGG  296
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TCGAATTATTATCTTCAGCAGAGAGCAGTATGTCTCCATGTATCCATGGG  277

seq1  AC-TTTTTTTTTCCCCCAAAGTTTTTGAATGTGAATAGCATTTCTGTTTT  345
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTCCCCCAAAGTTTTTGAATGTGAATAGCATTTCTGTTTT  327

seq1  TAGACTAAGAGTGTTAATTACACAGAAAGTATATGATCTTTTTACCATGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAAGAGTGTTAATTACACAGAAAGTATATGATCTTTTTACCATGT  377

seq1  GTAATGAGATGCATACATGGATTAAAAATCTGGAAAGCTTTTAACATTCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGATGCATACATGGATTAAAAATCTGGAAAGCTTTTAACATTCC  427

seq1  TTTTTTTATCTACATGACCAAAGTTTAATAAAACAATTTCTCCTGTTACA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTATCTACATGACCAAAGTTTAATAAAACAATTTCTCCTGTTACA  477

seq1  GATTTGTTTAATATTTATGTTGAAAATATAAACAGATATAGCTGACTTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTTAATATTTATGTTGAAAATATAAACAGATATAGCTGACTTAA  527

seq1  ATTCTATCTAAAAAAAAAAGAAAGGCTATGAGTTAACAGTTTGTCGTTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATCTAAAAAAAAAAGAAAGGCTATGAGTTAACAGTTTGTCGTTTT  577

seq1  TATGATGTAGCCAGTTGAAAAATGAAGAGACGCTCTAAAGGGTGAAGCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTAGCCAGTTGAAAAATGAAGAGACGCTCTAAAGGGTGAAGCTT  627

seq1  GTTTCTGTTATACAGCTCTTTTTCTTGTGACTTGTAATGAACGTAACAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTTATACAGCTCTTTTTCTTGTGACTTGTAATGAACGTAACAAC  677

seq1  TTATTTGTATTTTACTTACAGTAGACGATGGCTTCTGTCTGCACCTTCAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTATTTTACTTACAGTAGACGATGGCTTCTGTCTGCACCTTCAT  727

seq1  CGTTAGGGATTTTTATGTGTGTAATTTATTTTTCAGTTTCCTAAAGTAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGGGATTTTTATGTGTGTAATTTATTTTTCAGTTTCCTAAAGTAGG  777

seq1  ATTTTAGGTATATTTTTCTTTTTTTTTTTTCAACTCAGGTGTTTTCAGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGGTATATTTTTCTTTTTTTTTTTTCAACTCAGGTGTTTTCAGTC  827

seq1  TTAGACACATGCTGAGACTTTGAAATGTGGTCATTATTAATGTACTTTCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACACATGCTGAGACTTTGAAATGTGGTCATTATTAATGTACTTTCC  877

seq1  AAAAATGTGTTTATTAATTGATAGGACAAGCAGTGTCTAACGTTTAAGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGTTTATTAATTGATAGGACAAGCAGTGTCTAACGTTTAAGAT  927

seq1  AAGCATTTAACCCCCTTTTCTTTTGATCGCATACAGTTGTCACTCTGGGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTAACCCCCTTTTCTTTTGATCGCATACAGTTGTCACTCTGGGT  977

seq1  CTCCCCTTCAGGAGTGTTCAGTCCACTGCTGAAAACTTGTGTTTTTATCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTCAGGAGTGTTCAGTCCACTGCTGAAAACTTGTGTTTTTATCA  1027

seq1  CCTCTCACATCTCTCCCTGGGTGGCAGCGCAGGGTCCTGGAGAGTTTACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACATCTCTCCCTGGGTGGCAGCGCAGGGTCCTGGAGAGTTTACA  1077

seq1  GACACACAGAGTAGCCTAAATCTCTGCTTCTCCACTTAGTAGCTATGTGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACAGAGTAGCCTAAATCTCTGCTTCTCCACTTAGTAGCTATGTGA  1127

seq1  TCTTGGGCAGAATTC  1160
      |||||||||||||||
seq2  TCTTGGGCAGAATTC  1142