BAC Information

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BAC

Clone NameB6Ng01-331A13
Chromosome10 (Build37)
Map Location 73,892,405 - 74,065,716
singlet/doubletdoublet
Overlap genePcdh15
Upstream geneLOC432471, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331A13.bB6Ng01-331A13.g
ACCGA117513GA117514
length206694
definitionB6Ng01-331A13.b B6Ng01-331A13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,892,405 - 73,892,610)(74,065,150 - 74,065,716)
sequence
aatgagcccagacaccccctattcacaacaccctctgggaaagcaagcca
ggtccatgacagcttggctgtgacattctgtgggtcagttaccactgagg
gccatgaagacatccatgagctgagatgaagtctgaagccaaatccatag
tccatgctgccaccatggttggggtgtggaaaggtgaaggaaagagtata
ttgttg
gaattcatatgggtccacaaaagtaaacgccaaagaaatgccaaggataa
agaacacagacagaggtgtcatggcacatggtctccaattacactacaga
gctttagcaaccagcaaagtcagcctgatacaggcataagaagacaggca
gactgatgaaaacaaattgagaagccaaatataagctggcatagctagga
gaacccatacatagctgtgtccacctgacatttggcaaaggtgttagcaa
catgcagtaggaaaaagagtatccttaataatgctggaagaaaacccacc
attgaagaatgaactcagatccatatctttgggagtgcttttttccctct
gccagtgggactgtaaaccagtggaaacctcatggaaatcagtgtggaga
tttctcaaaaattcaaaatagaactaacccatgacccagttatgccattc
ctggacaacatccaaaggtagattttcttttaaaaaaagtaataatgtat
agttataaagaaaaatgagatcataaaatttacaggaaaatggatggaca
caaaatgttaaatgaggtgactggaagtcaggaaaaatagtaacaacacc
accaaccaaccaccaaccacccaaccaaaacaacaacaaacccagcatat
tctctctcatttgcagatcctagcccatatgtaatgttggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73892405_73892610
seq2: B6Ng01-331A13.b_52_257

seq1  AATGAGCCCAGACACCCCCTATTCACAACACCCTCTGGGAAAGCAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCCCAGACACCCCCTATTCACAACACCCTCTGGGAAAGCAAGCCA  50

seq1  GGTCCATGACAGCTTGGCTGTGACATTCTGTGGGTCAGTTACCACTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGACAGCTTGGCTGTGACATTCTGTGGGTCAGTTACCACTGAGG  100

seq1  GCCATGAAGACATCCATGAGCTGAGATGAAGTCTGAAGCCAAATCCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAGACATCCATGAGCTGAGATGAAGTCTGAAGCCAAATCCATAG  150

seq1  TCCATGCTGCCACCATGGTTGGGGTGTGGAAAGGTGAAGGAAAGAGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGCTGCCACCATGGTTGGGGTGTGGAAAGGTGAAGGAAAGAGTATA  200

seq1  TTGTTG  206
      ||||||
seq2  TTGTTG  206

seq1: chr10_74065150_74065716
seq2: B6Ng01-331A13.g_195_761 (reverse)

seq1  CACACCAACATTACATATGGGCTAGGATCTGCAAATGAGAGAGAATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCAACATTACATATGGGCTAGGATCTGCAAATGAGAGAGAATATGC  50

seq1  TGGGTTTGTTGTTGTTTTGGTTGGGTGGTTGGTGGTTGGTTGGTGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGTTGTTGTTTTGGTTGGGTGGTTGGTGGTTGGTTGGTGGTGTT  100

seq1  GTTACTATTTTTCCTGACTTCCAGTCACCTCATTTAACATTTTGTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATTTTTCCTGACTTCCAGTCACCTCATTTAACATTTTGTGTCCA  150

seq1  TCCATTTTCCTGTAAATTTTATGATCTCATTTTTCTTTATAACTATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCCTGTAAATTTTATGATCTCATTTTTCTTTATAACTATACAT  200

seq1  TATTACTTTTTTTAAAAGAAAATCTACCTTTGGATGTTGTCCAGGAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTTTTTTAAAAGAAAATCTACCTTTGGATGTTGTCCAGGAATGG  250

seq1  CATAACTGGGTCATGGGTTAGTTCTATTTTGAATTTTTGAGAAATCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGGGTCATGGGTTAGTTCTATTTTGAATTTTTGAGAAATCTCCA  300

seq1  CACTGATTTCCATGAGGTTTCCACTGGTTTACAGTCCCACTGGCAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATTTCCATGAGGTTTCCACTGGTTTACAGTCCCACTGGCAGAGGG  350

seq1  AAAAAAGCACTCCCAAAGATATGGATCTGAGTTCATTCTTCAATGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCACTCCCAAAGATATGGATCTGAGTTCATTCTTCAATGGTGGG  400

seq1  TTTTCTTCCAGCATTATTAAGGATACTCTTTTTCCTACTGCATGTTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCAGCATTATTAAGGATACTCTTTTTCCTACTGCATGTTGCTA  450

seq1  ACACCTTTGCCAAATGTCAGGTGGACACAGCTATGTATGGGTTCTCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTGCCAAATGTCAGGTGGACACAGCTATGTATGGGTTCTCCTAG  500

seq1  CTATGCCAGCTTATATTTGGCTTCTCAATTTGTTTTCATCAGTCTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCAGCTTATATTTGGCTTCTCAATTTGTTTTCATCAGTCTGCCTG  550

seq1  TCTTCTTATGCCTGTAT  567
      |||||||||||||||||
seq2  TCTTCTTATGCCTGTAT  567