BAC Information

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BAC

Clone NameB6Ng01-331H17
Chromosome10 (Build37)
Map Location 104,015,036 - 104,016,149
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331H17.bB6Ng01-331H17.g
ACCGA117836GA117837
length1,1101,149
definitionB6Ng01-331H17.b B6Ng01-331H17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtattgcctttgctttccaactttcatctcaattttgtatgta
agtacagaaaactgtccctgcctctggtgtctataggcattaaaacacta
ctgaaagagcagtttcacagtagggattttacatacctggaagcagctga
tctatgagctatgtaaaagtcataaaagtagagatgcgagcagtgttaat
attctgtgaattttgtatcataaacacaaatattcatgacctggtcttat
aatcaattgccttcagagtagaatagctcttttttggggtatttgctata
ttaacatgatcttagttttccatggcagcagatcattgtggctataagta
ccaccttcctttactttagtaaagtatactagaaaagtcactttatagta
cttgtagagtttgtatctttttaggagaacaaaaataaaaatctaagaga
agaaataccaagcaaaccgataaaggtgacaagaggtgatagaagttgct
cttgagcagaacagctgtttaagcaaaactcagtgttataagcttctgtt
gtgtgaagaaggtattcagcctgcagggtctctatgaacatacttaaaca
cagcaagaagataaaattgagaattttaagtaccagtaatgtttcaattt
ccaagttgcaactgtttgagtttgggattccacagctgtgaagagacacc
atgacaaagacaaccattctaaaggataaaatttaattagggttggcttc
caggctcagaagttcagtgtattatcaacaaggcaggagcatgatggagt
ccaagcaggcatggtgaaggagggtttccattataatctgaaggccacca
gaagattgtctcatgggcagctaggaggagggtatcaaagtcccccttgc
aaagtgacacacttcttccaataaaatgacacatactcccaagaggccaa
gcttcctaatagtccctgggccaaacatattcaaaccatcatgtcccact
cgctggcatccatagtcttgttcaatctgactctatggggattataccta
ggttacgatatacaatacggttttgtctaactcagacgtccatagtctta
atagccagtc

gaattcctcagccagtcccacaaaacccagaggaagctccactcccaggt
gctctaacatgcccaggaccacaggatcccaggatcccaggagcttggac
acagcagaatctcagggtcccagaggcaggttgactcccaggagctctga
cacacccagtaacacaggatcccagatcacagagacaactgaactctgag
gagctctgacacacagaggatcacaggaaggaaaggtcccagtcagatag
agcaagggcaggcagcacgagagataatcagatagtaaaaggcaaacata
agaacataagcaacaaaaaccaaaattaattggcatcatcagaacccaat
tatccaatcatagaaagtcctgtatataccatcacaccataaaagcaaga
tttggatctaaaatcacttctcatgatggtgataaaggaatttaagaaag
tcataaataactcccaaaaaagaaacacaggagaacaaaggtaaacagct
agaagcccttaaagaggaaacataaaaatcccttaaaagattacaggaaa
acacaattaaagaggtgaaggaaatgaacagaaccatccaaggtctaaaa
atggaaatagagacaataaagaaatcacaaaaggagacaacacttgagtt
agaaaacctaggaaagagatcaggagacatagatgcaagcatcaccaaca
gaatacaagagatagaatagagaatcttgggtgcagaagatagcatagaa
aacattgacacaacagtcaaagacaaggaaaaaggcaaaaagctcctaac
ccaaaacatccaggaaacccaggacacaatgaaaagacgaaacctatgga
taataggtagagaagagagcaaagattccaaagttaaagggccagtaaat
atcttcaaaaaaaaattataggaaaaaacttccttaaccctaagaaagag
gtgcccatgaatatacagaagctcacagaactccaaatagactggacgtg
aaataaactcctcccgttcatgtattatcaaacacaatgcacaaacagag
atactaaagcattaaggaaaagtcaaatactataaagttgacctatcgat
taaccagactctaacagaaccttatgcaaaaggctagaagaaatgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104015036_104016149
seq2: B6Ng01-331H17.b_33_1142 (reverse)

seq1  GACT-GCTAT--AGACTATGGGACGTCTGAAGTTAGACAAA--CGTATTT  45
      |||| |||||  ||||||| ||||||||| |||||||||||  |||||| 
seq2  GACTGGCTATTAAGACTAT-GGACGTCTG-AGTTAGACAAAACCGTATTG  48

seq1  TGTATTATTCTGTAA-CTAGGTATAATCCCCATAGAGTCAAGAATTTGAA  94
      | |||      |||| ||||||||||||||||||||||| |||  |||||
seq2  TATAT-----CGTAACCTAGGTATAATCCCCATAGAGTC-AGA--TTGAA  90

seq1  CAAGACTATGGATGCCAGCGAGTGGGACATGATGGTTTGAATATGTTTGG  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTATGGATGCCAGCGAGTGGGACATGATGGTTTGAATATGTTTGG  140

seq1  CCCAGGGACTATTAGGAAGCTTGGCCTCTTGGGAGTATGTGTCATTTTAT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGACTATTAGGAAGCTTGGCCTCTTGGGAGTATGTGTCATTTTAT  190

seq1  TGGAAGAAGTGTGTCACTTTGCAAGGGGGACTTTGATACCCTCCTCCTAG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAGTGTGTCACTTTGCAAGGGGGACTTTGATACCCTCCTCCTAG  240

seq1  CTGCCCATGAGACAATCTTCTGGTGGCCTTCAGATTATAATGGAAACCCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCATGAGACAATCTTCTGGTGGCCTTCAGATTATAATGGAAACCCT  290

seq1  CCTTCACCATGCCTGCTTGGACTCCATCATGCTCCTGCCTTGTTGATAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCATGCCTGCTTGGACTCCATCATGCTCCTGCCTTGTTGATAAT  340

seq1  ACACTGAACTTCTGAGCCTGGAAGCCAACCCTAATTAAATTTTATCCTTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAACTTCTGAGCCTGGAAGCCAACCCTAATTAAATTTTATCCTTT  390

seq1  AGAATGGTTGTCTTTGTCATGGTGTCTCTTCACAGCTGTGGAATCCCAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGTTGTCTTTGTCATGGTGTCTCTTCACAGCTGTGGAATCCCAAA  440

seq1  CTCAAACAGTTGCAACTTGGAAATTGAAACATTACTGGTACTTAAAATTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACAGTTGCAACTTGGAAATTGAAACATTACTGGTACTTAAAATTC  490

seq1  TCAATTTTATCTTCTTGCTGTGTTTAAGTATGTTCATAGAGACCCTGCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTATCTTCTTGCTGTGTTTAAGTATGTTCATAGAGACCCTGCAG  540

seq1  GCTGAATACCTTCTTCACACAACAGAAGCTTATAACACTGAGTTTTGCTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATACCTTCTTCACACAACAGAAGCTTATAACACTGAGTTTTGCTT  590

seq1  AAACAGCTGTTCTGCTCAAGAGCAACTTCTATCACCTCTTGTCACCTTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTGTTCTGCTCAAGAGCAACTTCTATCACCTCTTGTCACCTTTA  640

seq1  TCGGTTTGCTTGGTATTTCTTCTCTTAGATTTTTATTTTTGTTCTCCTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTGCTTGGTATTTCTTCTCTTAGATTTTTATTTTTGTTCTCCTAA  690

seq1  AAAGATACAAACTCTACAAGTACTATAAAGTGACTTTTCTAGTATACTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACAAACTCTACAAGTACTATAAAGTGACTTTTCTAGTATACTTT  740

seq1  ACTAAAGTAAAGGAAGGTGGTACTTATAGCCACAATGATCTGCTGCCATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTAAAGGAAGGTGGTACTTATAGCCACAATGATCTGCTGCCATG  790

seq1  GAAAACTAAGATCATGTTAATATAGCAAATACCCCAAAAAAGAGCTATTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTAAGATCATGTTAATATAGCAAATACCCCAAAAAAGAGCTATTC  840

seq1  TACTCTGAAGGCAATTGATTATAAGACCAGGTCATGAATATTTGTGTTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGAAGGCAATTGATTATAAGACCAGGTCATGAATATTTGTGTTTA  890

seq1  TGATACAAAATTCACAGAATATTAACACTGCTCGCATCTCTACTTTTATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAAATTCACAGAATATTAACACTGCTCGCATCTCTACTTTTATG  940

seq1  ACTTTTACATAGCTCATAGATCAGCTGCTTCCAGGTATGTAAAATCCCTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTACATAGCTCATAGATCAGCTGCTTCCAGGTATGTAAAATCCCTA  990

seq1  CTGTGAAACTGCTCTTTCAGTAGTGTTTTAATGCCTATAGACACCAGAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAACTGCTCTTTCAGTAGTGTTTTAATGCCTATAGACACCAGAGG  1040

seq1  CAGGGACAGTTTTCTGTACTTACATACAAAATTGAGATGAAAGTTGGAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACAGTTTTCTGTACTTACATACAAAATTGAGATGAAAGTTGGAAA  1090

seq1  GCAAAGGCAATACAGAATTC  1114
      ||||||||||||||||||||
seq2  GCAAAGGCAATACAGAATTC  1110


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