BAC Information

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BAC

Clone NameB6Ng01-332E05
Chromosome10 (Build37)
Map Location 100,377,746 - 100,431,678
singlet/doubletdoublet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332E05.bB6Ng01-332E05.g
ACCGA118411GA118412
length1,1391,161
definitionB6Ng01-332E05.b B6Ng01-332E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,377,746 - 100,378,874)(100,430,523 - 100,431,678)
sequence
gaattcctcatatttttttctctcttctccactccttactgatgtctttt
attggcatcaccctctgtagtggtttgaatatgcttgagggagtgaaact
tgtaggcggtgtggccttattggagtaggtatgaccttgttggaggctat
gccactatgaagtgggcaatgagactctccttctaatcatgtgggagccg
gtcttattctagtggccttcagataaagatatagaattctcagttcctcc
tgcactatgcctgcctgggattctgcaatactcctgccatgatgataaag
gattgaatctcttaaacctgtaagccacctctaattaaatgttttcctta
taagagttggcttggtcatgtctgttaaccagagtaaaaccctaaccaag
acaccctcaaattctaactcctttttatcccagaccacgaatctctgctt
actccttgccctagactgtagtaatactcatgacattctaaaaatgtgtt
ctattttagcctccagaatcttgccatgactttcattctttacctctgac
cccacaccttaccctaatcacactgtaattacttcccttaattatagatc
cttttctcaactttttttttaaccattctccctggtcatattactccgga
atttactctggtttggtcagcacattatcattaccatcttttttgtctat
ctatccttcttgacaaggaaaacacccttaaggactatcttttaccctga
catacaatatgtttccaacatttcttcggggaataagtagtgactgactg
agcactgtcatgtagtaacctttaaaaacaacttttaatttgacttcaaa
tcatcccagtaggttattcattgtgaagttctttacaaacatatggaaat
cagttaggaacaaaatattccaaataagatacacagtgctcattaatcaa
agtctcatcagaaacacacacacacacacacacacacacacacacacaca
cacccgcacacacacactacctggcagcagttttgttgctaattgcataa
atttgaaggggatttataagatttattgctacagttcccctattgttatt
gttaaggatgtgtattttttttctagaagagaattaata
gaattctacatctaccaaaaagccagatattcacactgaagctaaaatta
tctttagtaaacatgtctcctaaaatcagaaactactattgaaactgaaa
ggtgttagattttagatcagtaaaagtgttggtctcctggtattcaggta
aattgatggttatcattcatatataggaaatgttttaaaatattaacatt
atgtgaaattaagtaataatttatgaatgccagtggccaaaattgccatt
ccatatctgtatttgttaaatttttggcttctaacaacagattacatgtc
tgctgcactgtcataggaagataaattcaagtgaggattgtgatacagtc
aagaattctcagcaaacaaagctttgttgaaattttaaagtaatattctg
agattgctgaaaggaacccataatagtcaggattataacagatgcaacaa
ttgcaacggtgatgaatatgataaatacattatcattcaacaaggtaaag
ttcgatctgaagaaaaatttatagcaaaatggcaagggaatgtatatata
ctatacttatatgtatatataagagaactcagatctcgtggagacagtat
agtccacctatcagacaacaaaactgttgctggctttaaagataacactg
ctctgggctagctagtgagctgcctgttgtatggactgcacagaaccagc
aacaatcaaacacccctattttgctcagggtgttgtgcgggctacgtgga
gtcttacagaagaagaaaaatgtagctgtgtgactctctgaagaaatggt
gttgtgtcttctgagcttgtatctgcttgagaaggaaatttcagacatct
tgaaaagtattatatacaaatcctgtttctggggagacggcaagaaaggt
tatgatctctatgctaatgcaacaaggtccatagggataaacactctgga
gcttgtggggtggtacagtgcttccaataagaggtactgtcttgctatgt
cttcactttcctgtcagtcaatcttgataccagataatttgctttcttgt
cctaatacaaaatatgaaatgtaactgggaatcatatattgatatttcat
aaacatttagaatcatatctatatggtaatattctaggctaacggcttaa
aaacaatcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100377746_100378874
seq2: B6Ng01-332E05.b_45_1183

seq1  GAATTCCTCATATTTTTTTCTCTCTTCTCCACTCCTTACTGATGTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATATTTTTTTCTCTCTTCTCCACTCCTTACTGATGTCTTTT  50

seq1  ATTGGCATCACCCTCTGTAGTGGTTTGAATATGCTTGAGGGAGTGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATCACCCTCTGTAGTGGTTTGAATATGCTTGAGGGAGTGAAACT  100

seq1  TGTAGGCGGTGTGGCCTTATTGGAGTAGGTATGACCTTGTTGGAGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCGGTGTGGCCTTATTGGAGTAGGTATGACCTTGTTGGAGGCTAT  150

seq1  GCCACTATGAAGTGGGCAATGAGACTCTCCTTCTAATCATGTGGGAGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTATGAAGTGGGCAATGAGACTCTCCTTCTAATCATGTGGGAGCCG  200

seq1  GTCTTATTCTAGTGGCCTTCAGATAAAGATATAGAATTCTCAGTTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTCTAGTGGCCTTCAGATAAAGATATAGAATTCTCAGTTCCTCC  250

seq1  TGCACTATGCCTGCCTGGGATTCTGCAATACTCCTGCCATGATGATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTATGCCTGCCTGGGATTCTGCAATACTCCTGCCATGATGATAAAG  300

seq1  GATTGAATCTCTTAAACCTGTAAGCCACCTCTAATTAAATGTTTTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAATCTCTTAAACCTGTAAGCCACCTCTAATTAAATGTTTTCCTTA  350

seq1  TAAGAGTTGGCTTGGTCATGTCTGTTAACCAGAGTAAAACCCTAACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTGGCTTGGTCATGTCTGTTAACCAGAGTAAAACCCTAACCAAG  400

seq1  ACACCCTCAAATTCTAACTCCTTTTTATCCCAGACCACGAATCTCTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCAAATTCTAACTCCTTTTTATCCCAGACCACGAATCTCTGCTT  450

seq1  ACTCCTTGCCCTAGACTGTAGTAATACTCATGACATTCTAAAAATGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTGCCCTAGACTGTAGTAATACTCATGACATTCTAAAAATGTGTT  500

seq1  CTATTTTAGCCTCCAGAATCTTGCCATGACTTTCATTCTTTACCTCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGCCTCCAGAATCTTGCCATGACTTTCATTCTTTACCTCTGAC  550

seq1  CCCACACCTTACCCTAATCACACTGTAATTACTTCCCTTAATTATAGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTTACCCTAATCACACTGTAATTACTTCCCTTAATTATAGATC  600

seq1  CTTTTCTCAACTTTTTTTTTAACCATTCTCCCTGGTCATATTACTCCGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCAACTTTTTTTTTAACCATTCTCCCTGGTCATATTACTCCGGA  650

seq1  ATTTACTCTGGTTTGGTCAGCACATTATCATTACCATCTTTTTTGTCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTCTGGTTTGGTCAGCACATTATCATTACCATCTTTTTTGTCTAT  700

seq1  CTATCCTTCTTGACAAGGAAAACACCCTTAAGGACTATCTTTTACCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTCTTGACAAGGAAAACACCCTTAAGGACTATCTTTTACCCTGA  750

seq1  CATACAATATGTTTCCAACATTTCTTCGGGGAATAAGTAGTGACTGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATATGTTTCCAACATTTCTTCGGGGAATAAGTAGTGACTGACTG  800

seq1  AGCACTGTCATGTAGTAACCTTTAAAAACAACTTTTAATTTGACTTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTCATGTAGTAACCTTTAAAAACAACTTTTAATTTGACTTCAAA  850

seq1  TCATCCCAGTAGGTTATTCATTGTGAAGTTCTTTACAAACATATGGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCAGTAGGTTATTCATTGTGAAGTTCTTTACAAACATATGGAAAT  900

seq1  CAGTTAGGAACAAAATATTCCAAATAAGATAACACAGTGCTCATTAATCA  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGTTAGGAACAAAATATTCCAAATAAGAT-ACACAGTGCTCATTAATCA  949

seq1  AAGTCTCATCAGAAACACACACACACACACACACACACACACACACACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCATCAGAAACACACACACACACACACACACACACACACACACAC  999

seq1  ACACCCGCACACACACACTACCTGGCAGCAGTTTTTGTTGCTAATTGCAT  1050
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACACCCGCACACACACACTACCTGGCAGCAG-TTTTGTTGCTAATTGCAT  1048

seq1  AAATCTGAAGGGGA-TTAT-AGATTTATTGCTACAG-TCCCCTA-TGTTA  1096
      |||| ||||||||| |||| |||||||||||||||| ||||||| |||||
seq2  AAATTTGAAGGGGATTTATAAGATTTATTGCTACAGTTCCCCTATTGTTA  1098

seq1  -TGT--AAGATGT---ATTTTTTTCTAGA--AGAATTAATA  1129
       |||  | |||||    ||||||||||||  ||||||||||
seq2  TTGTTAAGGATGTGTATTTTTTTTCTAGAAGAGAATTAATA  1139

seq1: chr10_100430523_100431678
seq2: B6Ng01-332E05.g_69_1229 (reverse)

seq1  CCTGATTGTTTTTAGGCTGTTTGGCTTAGAATATTACCATAATGATATGA  50
      |||||||||||||| || | || || |||||||||||||||  |||||||
seq2  CCTGATTGTTTTTAAGCCG-TTAGCCTAGAATATTACCATATAGATATGA  49

seq1  TCTAAAATGTTATAGAAATATTTTATTTATATGATTTTCCAGTTACATTT  100
      |   |||||||   ||||||   |   ||||||| || ||||||||||||
seq2  TTCTAAATGTTTATGAAATA---TCAATATATGA-TTCCCAGTTACATTT  95

seq1  CATA-TTTGTATTAGGAACAGAAAGCAA--TATCTTGGTATC-AGATTGA  146
      |||| ||||||||||||  |||||||||  |||| ||||||| |||||||
seq2  CATATTTTGTATTAGGACAAGAAAGCAAATTATC-TGGTATCAAGATTGA  144

seq1  CTGACAGGAAGTTGGAGACATAGC-AGACAGTACCTC-TATTGG-AGCAC  193
      ||||||||||  || ||||||||| |||||||||||| |||||| |||||
seq2  CTGACAGGAAAGTGAAGACATAGCAAGACAGTACCTCTTATTGGAAGCAC  194

seq1  TGTACCA-CCCACAAGCT-CAGAGTG-TTATCCCTATGGACCTTGTGACA  240
      ||||||| |||||||||| ||||||| |||||||||||||||||||  ||
seq2  TGTACCACCCCACAAGCTCCAGAGTGTTTATCCCTATGGACCTTGTTGCA  244

seq1  TTAGCATAGAGATCATAACC-TTCTTGCCGTCT-CCCAGAAACAGGATTT  288
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TTAGCATAGAGATCATAACCTTTCTTGCCGTCTCCCCAGAAACAGGATTT  294

seq1  GTATATAATACTTTTCAAGATGTCTGAAATTTTCCTTCTCAAGCAGATAC  338
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTATATAATACTTTTCAAGATGTCTGAAA-TTTCCTTCTCAAGCAGATAC  343

seq1  AAGCTCAGAAGACACAACACCATTTCTTCAGAGAGTCACACAGCTACATT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAGAAGACACAACACCATTTCTTCAGAGAGTCACACAGCTACATT  393

seq1  TTTCTTCTTCTGTAAGACTCCACGTAGCCCGCACAACACCCTGAGCAAAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTCTGTAAGACTCCACGTAGCCCGCACAACACCCTGAGCAAAA  443

seq1  TAGGGGTGTTTGATTGTTGCTGGTTCTGTGCAGTCCATACAACAGGCAGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTGTTTGATTGTTGCTGGTTCTGTGCAGTCCATACAACAGGCAGC  493

seq1  TCACTAGCTAGCCCAGAGCAGTGTTATCTTTAAAGCCAGCAACAGTTTTG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGCTAGCCCAGAGCAGTGTTATCTTTAAAGCCAGCAACAGTTTTG  543

seq1  TTGTCTGATAGGTGGACTATACTGTCTCCACGAGATCTGAGTTCTCTTAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGATAGGTGGACTATACTGTCTCCACGAGATCTGAGTTCTCTTAT  593

seq1  ATATACATATAAGTATAGTATATATACATTCCCTTGCCATTTTGCTATAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATATAAGTATAGTATATATACATTCCCTTGCCATTTTGCTATAA  643

seq1  ATTTTTCTTCAGATCGAACTTTACCTTGTTGAATGATAATGTATTTATCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTCAGATCGAACTTTACCTTGTTGAATGATAATGTATTTATCA  693

seq1  TATTCATCACCGTTGCAATTGTTGCATCTGTTATAATCCTGACTATTATG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATCACCGTTGCAATTGTTGCATCTGTTATAATCCTGACTATTATG  743

seq1  GGTTCCTTTCAGCAATCTCAGAATATTACTTTAAAATTTCAACAAAGCTT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTTTCAGCAATCTCAGAATATTACTTTAAAATTTCAACAAAGCTT  793

seq1  TGTTTGCTGAGAATTCTTGACTGTATCACAATCCTCACTTGAATTTATCT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTGAGAATTCTTGACTGTATCACAATCCTCACTTGAATTTATCT  843

seq1  TCCTATGACAGTGCAGCAGACATGTAATCTGTTGTTAGAAGCCAAAAATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGACAGTGCAGCAGACATGTAATCTGTTGTTAGAAGCCAAAAATT  893

seq1  TAACAAATACAGATATGGAATGGCAATTTTGGCCACTGGCATTCATAAAT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATACAGATATGGAATGGCAATTTTGGCCACTGGCATTCATAAAT  943

seq1  TATTACTTAATTTCACATAATGTTAATATTTTAAAACATTTCCTATATAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTAATTTCACATAATGTTAATATTTTAAAACATTTCCTATATAT  993

seq1  GAATGATAACCATCAATTTACCTGAATACCAGGAGACCAACACTTTTACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATAACCATCAATTTACCTGAATACCAGGAGACCAACACTTTTACT  1043

seq1  GATCTAAAATCTAACACCTTTCAGTTTCAATAGTAGTTTCTGATTTTAGG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAAATCTAACACCTTTCAGTTTCAATAGTAGTTTCTGATTTTAGG  1093

seq1  AGACATGTTTACTAAAGATAATTTTAGCTTCAGTGTGAATATCTGGCTTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGTTTACTAAAGATAATTTTAGCTTCAGTGTGAATATCTGGCTTT  1143

seq1  TTGGTAGATGTAGAATTC  1156
      ||||||||||||||||||
seq2  TTGGTAGATGTAGAATTC  1161