BAC Information

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BAC

Clone NameB6Ng01-332I12
Chromosome10 (Build37)
Map Location 49,323,082 - 49,368,838
singlet/doubletdoublet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652, Ascc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332I12.bB6Ng01-332I12.g
ACCGA118607GA118608
length1,1901,108
definitionB6Ng01-332I12.b B6Ng01-332I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,323,082 - 49,324,280)(49,367,727 - 49,368,838)
sequence
gaattcttccttagaaaccaccactaaaaaaaaaacaaaaacaaaaacaa
aaacaaacaaacaaacaaaaaaactcaaaaaacttcagtagctaatgtgt
attttcttctttaaaacatttcagtaataagttttgttgtatcgaagtta
aaacttttttcttagtttctgagattaaaagctttactagtgttgaaata
aaacatgttctactcttcttgttgaattgttttgccatttcactttttaa
aataagttttcctctttttgtatgacataatcttatctacttcatgctct
tatacaacaaatccatcacataccatattaccagtgaatacggcctaaga
agacagacaaatgtttttcatatcgttctgtctccagtatccattctaag
tctaatattaagtatagcttaatagatgtattatttctgaaagaagaccc
agaggccacatattttgtttattttagttatttctcattttgcaagaaaa
aaaaaataaagacagaataccacagccttttgaatgtttggatttatctt
tgcaaaccaactcaattgtattacaattttttttgtataactttcaatat
tgtacagtatcataagaaagggaatgtcttgtaaactaagaaaatatatt
atgaaattaattatagaatttgtagaggaattatattcacttaaatgtaa
tatcaaatataaaacaatttatagtattatgcttacgtgcatattttctg
agatttttttcacaatatatatatataatttacattaggggcacacttat
ttgaggaaattgttattgtacaggcacttgaaagttctggaaattagtat
aaaatggtaaggagaaaagctcattcccttaccttcacttacaatatacc
cagatgaaataaaagttgtctttggctcagaagaatactttgataatatt
caggcaaaaatgagaaagtcagtattcacagtacttgagtcttcttttgg
tagtaaaacctataatacctaaatttttgagatttactcatctcacgaaa
cttgctcatgttgtttcccatttcttcgtttataggactagaaataactg
tttgaattactctcatacgcatcaaataaacacaagactaatgcattcat
ttctaccatgagataaaggtctagccttgtttcagttaac

gaattccgaatttgaggccagcctgttgctgtgcactcataagaacaatc
ttatgagttacttaattattgaaccatgactggcattattatgagaccct
cacaatctgggagaaaacctaagatactttttttaagcttattgctttat
ataggctatgaaacaaagatactaaacaatgcttgagggaatacctagca
gcaagaaagcatttcttaacatatgttatcacaatattttcttaacctat
ttgcatagtgttgtttgcataaagcgctctgaaatataaaagaaatgaaa
tattcaggtttacattgactgtagtaaagcatcaagaagggagctatgta
ttgccatagaaacaaggagtaatacacagtaacatttgaaacaaaagagc
cttggtaacaatacatcataaggcaacatctttttcagggctgattcatt
taggttttgtttttgtgtgtagtattcttgtggtttatgcttataggatg
aacaagatcttattatggccttaagacacaataaaattttattaggttgt
ttagcatataaaatctctcaatatgaggatacggatgacaactaaacttg
aaggtatttgactaattttagtgtgatgtgtaggtcataaaacttaaatt
ggttgttttggctgtgataagagacttgctcattagcataattttaaatg
taaacaaaattatcctttaaaaactagcaattttgaatagtttaattatt
catgtaaaacttttttggtagtatatttgtacatcactttatgcatttta
catatttaattaaaatgttaaataagattcatgtaaacctgaatcttcat
ctctcaatagacttttctggtggaaatcccatttatttttctggtatttt
aattgtcaaggacagattcttcaaaatgtttttatttattctttgatatt
tttatacactatactttaatcttttctacgctttagctcctaccaggtct
ccctcactttctttttacccaacttcattattctttatcttaaaaatcta
actacacttggccccaactccaccccaacccccaaaatgatggtgttttg
gcactagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49323082_49324280
seq2: B6Ng01-332I12.b_45_1234

seq1  GAATTCTTCCTTAGAAACCACCACTAAAAAAAAAACAAAAACAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTTAGAAACCACCACTAAAAAAAAAACAAAAACAAAAACAA  50

seq1  AAACAAACAAACAAACAAAAAAACTCAAAAAACTTCAGTAGCTAATGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACAAAAAAACTCAAAAAACTTCAGTAGCTAATGTGT  100

seq1  ATTTTCTTCTTTAAAACATTTCAGTAATAAGTTTTGTTGTATCGAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCTTTAAAACATTTCAGTAATAAGTTTTGTTGTATCGAAGTTA  150

seq1  AAACTTTTTTCTTAGTTTCTGAGATTAAAAGCTTTACTAGTGTTGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTTCTTAGTTTCTGAGATTAAAAGCTTTACTAGTGTTGAAATA  200

seq1  AAACATGTTCTACTCTTCTTGTTGAATTGTTTTGCCATTTCACTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTCTACTCTTCTTGTTGAATTGTTTTGCCATTTCACTTTTTAA  250

seq1  AATAAGTTTTCCTCTTTTTGTATGACATAATCTTATCTACTTCATGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTTTCCTCTTTTTGTATGACATAATCTTATCTACTTCATGCTCT  300

seq1  TATACAACAAATCCATCACATACCATATTACCAGTGAATACGGCCTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAACAAATCCATCACATACCATATTACCAGTGAATACGGCCTAAGA  350

seq1  AGACAGACAAATGTTTTTCATATCGTTCTGTCTCCAGTATCCATTCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAAATGTTTTTCATATCGTTCTGTCTCCAGTATCCATTCTAAG  400

seq1  TCTAATATTAAGTATAGCTTAATAGATGTATTATTTCTGAAAGAAGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATTAAGTATAGCTTAATAGATGTATTATTTCTGAAAGAAGACCC  450

seq1  AGAGGCCACATATTTTGTTTATTTTAGTTATTTCTCATTTTGCAAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCACATATTTTGTTTATTTTAGTTATTTCTCATTTTGCAAGAAAA  500

seq1  AAAAAATAAAGACAGAATACCACAGCCTTTTGAATGTTTGGATTTATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAAAGACAGAATACCACAGCCTTTTGAATGTTTGGATTTATCTT  550

seq1  TGCAAACCAACTCAATTGTATTACAATTTTTTTTGTATAACTTTCAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACCAACTCAATTGTATTACAATTTTTTTTGTATAACTTTCAATAT  600

seq1  TGTACAGTATCATAAGAAAGGGAATGTCTTGTAAACTAAGAAAATATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTATCATAAGAAAGGGAATGTCTTGTAAACTAAGAAAATATATT  650

seq1  ATGAAATTAATTATAGAATTTGTAGAGGAATTATATTCACTTAAATGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTAATTATAGAATTTGTAGAGGAATTATATTCACTTAAATGTAA  700

seq1  TATCAAATATAAAACAATTTATAGTATTATGCTTACGTGCATATTTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATATAAAACAATTTATAGTATTATGCTTACGTGCATATTTTCTG  750

seq1  AGATTTTTTTCACAATATATATATATAATTTACATTAGGGGCACACTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTCACAATATATATATATAATTTACATTAGGGGCACACTTAT  800

seq1  TTGAGGAAATTGTTATTGTACAGGCACTTGAAAGTTCTGGAAATTAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAATTGTTATTGTACAGGCACTTGAAAGTTCTGGAAATTAGTAT  850

seq1  AAAATGGTAAGGAGAAAAGCTCATTCCCTTACCTTCACTTACAATATACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGTAAGGAGAAAAGCTCATTCCCTTACCTTCACTTACAATATACC  900

seq1  CAGATGAAAT-AAAGTTGTCTTTGGCTCAGAAAGAATACTTTGATAATAT  949
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CAGATGAAATAAAAGTTGTCTTTGGCTCAG-AAGAATACTTTGATAATAT  949

seq1  TCAGGCAAAAATGAGAAAGTCAGTATTCACAGTACTTGAGTCTTCTTTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAAAAATGAGAAAGTCAGTATTCACAGTACTTGAGTCTTCTTTTG  999

seq1  GTAGTAAAACCTATAATACCTAAATTTTTGAGATTTAACTCATCTCACGA  1049
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTAGTAAAACCTATAATACCTAAATTTTTGAGATTT-ACTCATCTCACGA  1048

seq1  AACTTTGCTCATG-TGTTTCCCA-TTCTTCGTTTTATAGGACTAGAAATA  1097
      ||| ||||||||| ||||||||| ||||||| ||||||||||||||||| 
seq2  AAC-TTGCTCATGTTGTTTCCCATTTCTTCG-TTTATAGGACTAGAAAT-  1095

seq1  AACTGTTTGATTTACTCTCAAAAGGGAATCAAAATAAAACAACAAGACTA  1147
      |||||||||| ||||||||| |   | ||| |||||||   |||||||||
seq2  AACTGTTTGAATTACTCTCATA--CGCATC-AAATAAA--CACAAGACTA  1140

seq1  ATGCATTCATATCTAAACATGGAGATAAAAGTTCTAGCTGTG-TTCAGTT  1196
      |||||||||| ||| | ||| ||||| |||| ||||||  || |||||||
seq2  ATGCATTCATTTCT-ACCAT-GAGAT-AAAGGTCTAGCCTTGTTTCAGTT  1187

seq1  AAC  1199
      |||
seq2  AAC  1190


seq1: chr10_49367727_49368838
seq2: B6Ng01-332I12.g_68_1175 (reverse)

seq1  ACTAGTTGGCCAAAACA-CATCATTTTGGGGGGTGGGGGTGGAGGTGGGG  49
      ||||||  ||||||||| ||||||||| |||||| ||||||||| |||||
seq2  ACTAGT--GCCAAAACACCATCATTTT-GGGGGTTGGGGTGGAGTTGGGG  47

seq1  GCAAGTGTTAGTTTAGATTTTTAAGATAAAGAAT-ATGAAGTTGGGTAAA  98
       |||||| ||| |||||||||||||||||||||| |||||||||||||||
seq2  CCAAGTG-TAG-TTAGATTTTTAAGATAAAGAATAATGAAGTTGGGTAAA  95

seq1  AAGAAAGTGAGGGAGACCTGGTAGGAGCTAAAGCGTAGAAAAGATTAAAG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTGAGGGAGACCTGGTAGGAGCTAAAGCGTAGAAAAGATTAAAG  145

seq1  TATAGTGTATAAAAAATATCAAAGAATAAATAAAAACATTTTGAAGAATC  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTAT-AAAAATATCAAAGAATAAATAAAAACATTTTGAAGAATC  194

seq1  TGTCCTTGACAATTAAAATACCAGAAAAATAAATGGGATTTCCACCAGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGACAATTAAAATACCAGAAAAATAAATGGGATTTCCACCAGAA  244

seq1  AAGTCTATTGAGAGATGAAGATTCAGGTTTACATGAATCTTATTTAACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTATTGAGAGATGAAGATTCAGGTTTACATGAATCTTATTTAACAT  294

seq1  TTTAATTAAATATGTAAAATGCATAAAGTGATGTACAAATATACTACCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAATATGTAAAATGCATAAAGTGATGTACAAATATACTACCAA  344

seq1  AAAAGTTTTACATGAATAATTAAACTATTCAAAATTGCTAGTTTTTAAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTACATGAATAATTAAACTATTCAAAATTGCTAGTTTTTAAAG  394

seq1  GATAATTTTGTTTACATTTAAAATTATGCTAATGAGCAAGTCTCTTATCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTGTTTACATTTAAAATTATGCTAATGAGCAAGTCTCTTATCA  444

seq1  CAGCCAAAACAACCAATTTAAGTTTTATGACCTACACATCACACTAAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAAACAACCAATTTAAGTTTTATGACCTACACATCACACTAAAAT  494

seq1  TAGTCAAATACCTTCAAGTTTAGTTGTCATCCGTATCCTCATATTGAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAATACCTTCAAGTTTAGTTGTCATCCGTATCCTCATATTGAGAG  544

seq1  ATTTTATATGCTAAACAACCTAATAAAATTTTATTGTGTCTTAAGGCCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATGCTAAACAACCTAATAAAATTTTATTGTGTCTTAAGGCCAT  594

seq1  AATAAGATCTTGTTCATCCTATAAGCATAAACCACAAGAATACTACACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATCTTGTTCATCCTATAAGCATAAACCACAAGAATACTACACAC  644

seq1  AAAAACAAAACCTAAATGAATCAGCCCTGAAAAAGATGTTGCCTTATGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACCTAAATGAATCAGCCCTGAAAAAGATGTTGCCTTATGAT  694

seq1  GTATTGTTACCAAGGCTCTTTTGTTTCAAATGTTACTGTGTATTACTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTACCAAGGCTCTTTTGTTTCAAATGTTACTGTGTATTACTCCT  744

seq1  TGTTTCTATGGCAATACATAGCTCCCTTCTTGATGCTTTACTACAGTCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTATGGCAATACATAGCTCCCTTCTTGATGCTTTACTACAGTCAA  794

seq1  TGTAAACCTGAATATTTCATTTCTTTTATATTTCAGAGCGCTTTATGCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACCTGAATATTTCATTTCTTTTATATTTCAGAGCGCTTTATGCAA  844

seq1  ACAACACTATGCAAATAGGTTAAGAAAATATTGTGATAACATATGTTAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACTATGCAAATAGGTTAAGAAAATATTGTGATAACATATGTTAAG  894

seq1  AAATGCTTTCTTGCTGCTAGGTATTCCCTCAAGCATTGTTTAGTATCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTTCTTGCTGCTAGGTATTCCCTCAAGCATTGTTTAGTATCTTT  944

seq1  GTTTCATAGCCTATATAAAGCAATAAGCTTAAAAAAAGTATCTTAGGTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATAGCCTATATAAAGCAATAAGCTTAAAAAAAGTATCTTAGGTTT  994

seq1  TCTCCCAGATTGTGAGGGTCTCATAATAATGCCAGTCATGGTTCAATAAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAGATTGTGAGGGTCTCATAATAATGCCAGTCATGGTTCAATAAT  1044

seq1  TAAGTAACTCATAAGATTGTTCTTATGAGTGCACAGCAACAGGCTGGCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACTCATAAGATTGTTCTTATGAGTGCACAGCAACAGGCTGGCCT  1094

seq1  CAAATTCGGAATTC  1112
      ||||||||||||||
seq2  CAAATTCGGAATTC  1108


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