BAC Information

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BAC

Clone NameB6Ng01-332J17
Chromosome10 (Build37)
Map Location 72,888,152 - 72,958,191
singlet/doubletdoublet
Overlap geneLOC432471
Upstream geneZwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332J17.bB6Ng01-332J17.g
ACCGA118659GA118660
length1,1831,078
definitionB6Ng01-332J17.b B6Ng01-332J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,957,019 - 72,958,191)(72,888,152 - 72,889,244)
sequence
gaattcaaaataatctaggctttggacactgttaactttatttctcattt
ttacattccttaagttttgttgatcaaatagtcaaataaaatagttgctg
aatttatccaattaagggttaagccacagatctaggaattctctcagaga
aaaatgtgttccttatttcatagcctactaattagcataaaattaaccat
gaaaaatgagtgatttaatatgttcataaaggaggtttgtccctttggca
tggtgtctccataggaaggggtgattatagtcttttaattagcacatgcc
attgtgacaatagtgtataatatagacaccagaaagtcagaatattttaa
tgaaatgaagtactccttgatggcataaaaataagaacaaaagggaagta
catttaaaagttttcagacacaataggcctcaaattttattagctttagc
ccagcaagcaagcacacagatgggtataatgtcagtaatttttacaggga
aaatcagaacctatatgttaaactatgaatattctggatactaaatgaga
aaatcaaaaaccaatgcgtgtttgggtaggggtaactgaatctcttcgga
acctctatttcttgttagctgtcactgtctgcattccatcccattttgaa
gtcagatgacagcattttcagaacaacatcagtgttgatctagtagggac
aaggatcccactggccttgtgggaatcttactgatttctcttgtaaaact
gaatgaggaaaaaaatatgttttcaaaataattttttaaatatatatata
tattaaaatgatgtatatgtacttgtctctctgtgcgtatatgcccatga
gtacaggtgtctgaggggtacagaagaaggcatctgatcaacaaggggag
gggaattacaggtgctggtgagtcacctgaccttgatgctgggaattgga
acttgtgggcctctggaagggcagcaaatggtcttaaccactgagtcatc
tcctcgggccactcttatcttcctttacgataaatattcaaaggagagaa
agtcagagttttcaaaaataaaaacatattcttttcacttgaaattgttc
tcatactgtacagtaataatttattcatattctcagatctagaaggtggg
actggcctttacctgacttcaatgtaagtagtt

gaattctcccttgaaaatcagcatccggcattaatatgttcccctacccc
ctataattccttctatttcacatatgatttcattatgttctggacacagc
ctttgtctctgtcatcctccaaactcgattctctcattactttatttctg
gctctgcctcttccctctggtgattattatgggcctgtttagctgtagcc
tattggtctgacataattggaatttcctgatgtttgaaaactggacatct
tccaggaagatcagtgtttatatttaatcctttttattaaatcaaatgac
actgtggctctcccaggctttctattataacaaagaaggatttgccaaaa
atccatttgtttcttcgggaggattttcttccctttgtgtaaatattgaa
attatacatttattgataatcaggataggatctcagtatccgaaatagac
acatttttgtcagtttaaatattttacagattcttttactgactcaactc
catgttctttttttttttctgattcatttctttttttttttttataggat
aatttatttacatttcaaatgttatcccctatcccggtttcccctcctga
aaccctctgtcacaccctccttcctcctgcttctataagggtgctaacct
acctgcccaaccactcctacctccctaccctggcatcctctacactgggg
tattgagccttcacaggatcaagggcccctcctccaattgatgtccaaca
aggccatcctctacctcatatgcagctgaagccatgggtccctccatgtg
tactctttggttggtggttaggttcctgggagctttgggattactggttc
tcaactccatgttctaatttaaatgtatgtgtctggatatctgtctggat
atcttacgttctgaattcatcttctcaagctcattgtttcatgcatataa
gcagaacactaaggagcacagcatgaaaagcagcccttaaaataaaatat
agtataactgagcaaatagaagagaagaataatatatttggagtatcatg
atttgaacaacgagaaaagagatcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72957019_72958191
seq2: B6Ng01-332J17.b_46_1228 (reverse)

seq1  AACTACTTACATGGAGTTTCAGTAA--GCCAGTCCCA-CTTCTAGATCTG  47
      |||||||||||| ||  |   ||||  |||||||||| ||||||||||||
seq2  AACTACTTACATTGAAGTCAGGTAAAGGCCAGTCCCACCTTCTAGATCTG  50

seq1  AG-ATATG-ATAAA-TATTACTGTACAGTATGAG-ACAATTTCAAGTGAA  93
      || ||||| ||||| ||||||||||||||||||| |||||||||||||||
seq2  AGAATATGAATAAATTATTACTGTACAGTATGAGAACAATTTCAAGTGAA  100

seq1  A--GATATGTTTTTGTTTTTTGAAAACTCTGACTTTTCTCTCCTTTGAAT  141
      |   ||||||||||  ||||||||||||||||| ||||||||||||||||
seq2  AAGAATATGTTTTT-ATTTTTGAAAACTCTGAC-TTTCTCTCCTTTGAAT  148

seq1  ATTTTATCGT-AAGGAAGATAAGAGTGG-CCGAGGAGATGACTCAGTGGT  189
      | |||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  A-TTTATCGTAAAGGAAGATAAGAGTGGCCCGAGGAGATGACTCAGTGGT  197

seq1  TAAGACCATTTGCTGCCCTTCCAGAGG-CCACAAGTT-CAATTCCCAGCA  237
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  TAAGACCATTTGCTGCCCTTCCAGAGGCCCACAAGTTCCAATTCCCAGCA  247

seq1  TCAAGGTCAGGTGACTCACCAGCACCTGTAATTCCCCTCCCCTTGTTGAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCAGGTGACTCACCAGCACCTGTAATTCCCCTCCCCTTGTTGAT  297

seq1  CAGATGCCTTCTTCTGTACCCCTCAGACACCTGTACTCATGGGCATATAC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCTTCTTCTGTACCCCTCAGACACCTGTACTCATGGGCATATAC  347

seq1  GCACAGAGAGACAAGTACATATACATCATTTTAATATATATATATATTTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGAGACAAGTACATATACATCATTTTAATATATATATATATTTA  397

seq1  AAAAATTATTTTGAAAACATATTTTTTTCCTCATTCAGTTTTACAAGAGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTATTTTGAAAACATATTTTTTTCCTCATTCAGTTTTACAAGAGA  447

seq1  AATCAGTAAGATTCCCACAAGGCCAGTGGGATCCTTGTCCCTACTAGATC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTAAGATTCCCACAAGGCCAGTGGGATCCTTGTCCCTACTAGATC  497

seq1  AACACTGATGTTGTTCTGAAAATGCTGTCATCTGACTTCAAAATGGGATG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGATGTTGTTCTGAAAATGCTGTCATCTGACTTCAAAATGGGATG  547

seq1  GAATGCAGACAGTGACAGCTAACAAGAAATAGAGGTTCCGAAGAGATTCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGACAGTGACAGCTAACAAGAAATAGAGGTTCCGAAGAGATTCA  597

seq1  GTTACCCCTACCCAAACACGCATTGGTTTTTGATTTTCTCATTTAGTATC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCCTACCCAAACACGCATTGGTTTTTGATTTTCTCATTTAGTATC  647

seq1  CAGAATATTCATAGTTTAACATATAGGTTCTGATTTTCCCTGTAAAAATT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATTCATAGTTTAACATATAGGTTCTGATTTTCCCTGTAAAAATT  697

seq1  ACTGACATTATACCCATCTGTGTGCTTGCTTGCTGGGCTAAAGCTAATAA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTATACCCATCTGTGTGCTTGCTTGCTGGGCTAAAGCTAATAA  747

seq1  AATTTGAGGCCTATTGTGTCTGAAAACTTTTAAATGTACTTCCCTTTTGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGGCCTATTGTGTCTGAAAACTTTTAAATGTACTTCCCTTTTGT  797

seq1  TCTTATTTTTATGCCATCAAGGAGTACTTCATTTCATTAAAATATTCTGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTTATGCCATCAAGGAGTACTTCATTTCATTAAAATATTCTGA  847

seq1  CTTTCTGGTGTCTATATTATACACTATTGTCACAATGGCATGTGCTAATT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGGTGTCTATATTATACACTATTGTCACAATGGCATGTGCTAATT  897

seq1  AAAAGACTATAATCACCCCTTCCTATGGAGACACCATGCCAAAGGGACAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTATAATCACCCCTTCCTATGGAGACACCATGCCAAAGGGACAA  947

seq1  ACCTCCTTTATGAACATATTAAATCACTCATTTTTCATGGTTAATTTTAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTTATGAACATATTAAATCACTCATTTTTCATGGTTAATTTTAT  997

seq1  GCTAATTAGTAGGCTATGAAATAAGGAACACATTTTTCTCTGAGAGAATT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTAGTAGGCTATGAAATAAGGAACACATTTTTCTCTGAGAGAATT  1047

seq1  CCTAGATCTGTGGCTTAACCCTTAATTGGATAAATTCAGCAACTATTTTA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATCTGTGGCTTAACCCTTAATTGGATAAATTCAGCAACTATTTTA  1097

seq1  TTTGACTATTTGATCAACAAAACTTAAGGAATGTAAAAATGAGAAATAAA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTATTTGATCAACAAAACTTAAGGAATGTAAAAATGAGAAATAAA  1147

seq1  GTTAACAGTGTCCAAAGCCTAGATTATTTTGAATTC  1173
      ||||||||||||||||||||||||||||||||||||
seq2  GTTAACAGTGTCCAAAGCCTAGATTATTTTGAATTC  1183


seq1: chr10_72888152_72889244
seq2: B6Ng01-332J17.g_71_1148

seq1  GAATTCTCCCTTGAAAATCAGCATCCGGCATTAATATGTTCCCCTACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTGAAAATCAGCATCCGGCATTAATATGTTCCCCTACCCC  50

seq1  CTATAATTCCTTCTATTTCACATATGATTTCATTATGTTCTGGACACAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTCCTTCTATTTCACATATGATTTCATTATGTTCTGGACACAGC  100

seq1  CTTTGTCTCTGTCATCCTCCAAACTCGATTCTCTCATTACTTTATTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCTCTGTCATCCTCCAAACTCGATTCTCTCATTACTTTATTTCTG  150

seq1  GCTCTGCCTCTTCCCTCTGGTGATTATTATGGGCCTGTTTAGCTGTAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTCTTCCCTCTGGTGATTATTATGGGCCTGTTTAGCTGTAGCC  200

seq1  TATTGGTCTGACATAATTGGAATTTCCTGATGTTTGAAAACTGGACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTCTGACATAATTGGAATTTCCTGATGTTTGAAAACTGGACATCT  250

seq1  TCCAGGAAGATCAGTGTTTATATTTAATCCTTTTTATTAAATCAAATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAAGATCAGTGTTTATATTTAATCCTTTTTATTAAATCAAATGAC  300

seq1  ACTGTGGCTCTCCCAGGCTTTCTATTATAACAAAGAAGGATTTGCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCTCTCCCAGGCTTTCTATTATAACAAAGAAGGATTTGCCAAAA  350

seq1  ATCCATTTGTTTCTTCGGGAGGATTTTCTTCCCTTTGTGTAAATATTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGTTTCTTCGGGAGGATTTTCTTCCCTTTGTGTAAATATTGAA  400

seq1  ATTATACATTTATTGATAATCAGGATAGGATCTCAGTATCCGAAATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACATTTATTGATAATCAGGATAGGATCTCAGTATCCGAAATAGAC  450

seq1  ACATTTTTGTCAGTTTAAATATTTTACAGATTCTTTTACTGACTCAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGTCAGTTTAAATATTTTACAGATTCTTTTACTGACTCAACTC  500

seq1  CATGTTCTTTTTTTTTTTCTGATTCATTTCTTTTTTTTTTTTTATAGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTTTTTTTTTTTCTGATTCATTTCTTTTTTTTTTTTTATAGGAT  550

seq1  AATTTATTTACATTTCAAATGTTATCCCCTATCCCGGTTTCCCCTCCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTACATTTCAAATGTTATCCCCTATCCCGGTTTCCCCTCCTGA  600

seq1  AACCCTCTGTCACACCCTCCTTCCTCCTGCTTCTATAAGGGTGCTAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTGTCACACCCTCCTTCCTCCTGCTTCTATAAGGGTGCTAACCT  650

seq1  ACCTGCCCAACCACTCCTACCTCCCTACCCTGGCATCCTCTACACTGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCAACCACTCCTACCTCCCTACCCTGGCATCCTCTACACTGGGG  700

seq1  TATTGAGCCTTCACAGGATCAAGGGCCCCTCCTCCAATTGATGTCCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCCTTCACAGGATCAAGGGCCCCTCCTCCAATTGATGTCCAACA  750

seq1  AGGCCATCCTCTACCTCATATGCAGCTGAAGCCATGGGTCCCTCCATGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATCCTCTACCTCATATGCAGCTGAAGCCATGGGTCCCTCCATGTG  800

seq1  TACTCTTTGGTTGGTGGTTAGGTTCCTGGGAGCTTTGGGATTACTGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTGGTTGGTGGTTAGGTTCCTGGGAGCTTTGGGATTACTGGTTC  850

seq1  TCAACTCCATGTTCTAATTTAAATGTATGTGTCTGGATATCTGTCTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCCATGTTCTAATTTAAATGTATGTGTCTGGATATCTGTCTGGAT  900

seq1  ATCTTACGTTCTGAATTCATCTTCTCAAGCTCATTGTTTCATGCATATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACGTTCTGAATTCATCTTCTCAAGCTCATTGTTTCATGCATATAA  950

seq1  GCAGGAACACTAAGGAGCACAGGCATGAAAAGCAGCCCTTAAAATAAATA  1000
      ||| ||||||||||||||||| ||||||||||||||||||||||||||  
seq2  GCA-GAACACTAAGGAGCACA-GCATGAAAAGCAGCCCTTAAAATAAAAT  998

seq1  TTAGTTATAAAACTGAGCAAAATAGAAGAGAGAATTAATATATTTTGGGA  1050
       |||   || |||||||| ||||||||||||  | ||||||||||  |||
seq2  ATAG---TATAACTGAGC-AAATAGAAGAGAAGAATAATATATTT--GGA  1042

seq1  GGTAATCATGATTTGAAAACAAACAGAAGAAAAGAGACCCCTA  1093
      |   ||||||||||||| |     |  |||||||||| |||||
seq2  G--TATCATGATTTGAACA-----ACGAGAAAAGAGATCCCTA  1078


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