BAC Information

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BAC

Clone NameB6Ng01-332L04
Chromosome10 (Build37)
Map Location 120,922,571 - 121,029,716
singlet/doubletdoublet
Overlap geneLOC100043500, Tbk1, Xpot
Upstream geneLOC100042902, Msrb3, LOC100043488, Lemd3, Wif1, LOC100042911, 4930505D03Rik, LOC100043498, Gns, Rassf3
Downstream geneD930020B18Rik, BC048403, Srgap1, EG216394, LOC668272, Tmem5, LOC100043513, LOC668275, Avpr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332L04.bB6Ng01-332L04.g
ACCGA118722GA118723
length1,1121,051
definitionB6Ng01-332L04.b B6Ng01-332L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,922,571 - 120,923,696)(121,028,675 - 121,029,716)
sequence
gaattccagacaagcacacacataatcaatagaattccagacaagcacac
acataatcaatagaattccagacaagcacacacataatcaatagaattcc
agcttctctcagaaagcaaaaccacaccaacacttattattttggcaaat
ataaagggttctcaaaagtcctcggagatcaaaagtcccgagagccgttc
atcaaatagttggaggtcttactaggtgagcacactttgatgaggaaagt
actgtgtttttgagactaggtctgactgggtatcctagcctagcctcaga
ctcaccagatagttaaagataaccctgggctcctcctcttcctcttcctc
ttcctcttcctcttcctcttcctcttcctcttcctccccctcctttcctt
ctcccctctcccccttccccccaagcatctcactatgtagctccagctgt
catggatctcactctatagaccaggctggcctcaaacgcacagagacctg
cctgcttctgcctcctgagctaccacacgtgggaaccctgaacttctggt
cctgctactgtcacctccaagtgttgggattgtaagtgtgtgccaccatg
ctccatctatgtggtgctgcggatcagggtgctcacccctcttatttcca
ccgaattggcactgtgtccaagacaataccacacacaactgaagaaaccc
tatagaaagggggaaatgtaaagtacttgctatgtttttgtttttttttt
tttttcagaaaccttttccgtaaagaaggcctcttggccttccctgaaca
tcacttgagcgcttactgtatactagacactgttctgttctagaactttg
atctgtgggaactcactgactccttattacttcccggggcgaccctgacc
aaagggcagtgtgtgcagccaggaatgacagggttatcttcacaccttga
ggtcacctccgaaccactgtgtaccttgtccgtggggtcagtcacttgag
gaagagtcagtcagcctcaaagaaaaaaaatcaggtttctgcgcccacaa
tgatttactcgtattgactacatctgatgcagagatgtgcgtttggtgag
ggatgaaaatat
gaattcttaaatcaagagctggaggtgggtcagtggtagaacactgccta
gcacgtacaattcctgggttcaattcctagcatggcaaaacacccacaag
gaaactaaatagaagttaactagcatttgccttccttcagttgtgcattg
tctcttgttagttaccagccgaaggaagcatgcttttcttaagtttgggg
gaagcatccacagaaacgaggaaagcatcttcggaagtagccgaagcctt
gcttaggtggggttgctgtgggccctgcactgcaagcttgtgctgagtct
gtctgcgtgtgcatcacactgacagaggctcggctcagcttccagtgaca
gccgtttcttgggattagtaccttaattttctttccttttatgaaacttt
aaagttctttatgaaatgcagcagtggaaaactgactaacaaatcgaatg
taaagttgggaatgttcggttctgtgtgtgtagacacataagctgtgggg
taacaatcaaaactttcatagatatctttcatagatagccattacatttc
tttaaatatttcaatgccaatgtgtattctataagagaatagcttcctaa
ttaagtcggtttagaagcaggtgctggtgtcaacacattttttataaaaa
ataaattctacatagtgaaatataccaagtcttttccagaattattacaa
agagcctccttttcccaccttagggttttttttttttcttaagaattttt
tacattatgtatgtaagtattctatctgcttttacatctgcatgccagaa
agggggggggggcatcagatgccattacagatggttgtgagccaccccgt
ggttgctgggaaataaacctcaggaagcgtgtccattaacccataatggc
ctgaaccatctctccctgctagcaatgtttctaggtgattggaaaccggt
aatttggtgccgttgttttccagagctggcttgtcacttgctgactggct
tccgtatatcttctcagtgtccttcccatcttccagcagagctgacgaga
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_120922571_120923696
seq2: B6Ng01-332L04.b_46_1157

seq1  GAATTCCAGACAAGCACACACATAATCAATAGAATTCCAGACAAGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACAAGCACACACATAATCAATAGAATTCCAGACAAGCACAC  50

seq1  ACATAATCAATAGAATTCCAGACAAGCACACACATAATCAATAGAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATCAATAGAATTCCAGACAAGCACACACATAATCAATAGAATTCC  100

seq1  AGCTTCTCTCAGAAAGCAAAACCACACCAACACTTATTATTTTGGCAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCTCAGAAAGCAAAACCACACCAACACTTATTATTTTGGCAAAT  150

seq1  ATAAAGGGTTCTCAAAAGTCCTCGGAGATCAAAAGTCCCGAGAGCCGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGGTTCTCAAAAGTCCTCGGAGATCAAAAGTCCCGAGAGCCGTTC  200

seq1  ATCAAATAGTTGGAGGTCTTACTAGGTGAGCACACTTTGATGAGGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAGTTGGAGGTCTTACTAGGTGAGCACACTTTGATGAGGAAAGT  250

seq1  ACTGTGTTTTTGAGACTAGGTCTGACTGGGTATCCTAGCCTAGCCTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTTTTTGAGACTAGGTCTGACTGGGTATCCTAGCCTAGCCTCAGA  300

seq1  CTCACCAGATAGTTAAAGATAACCCTGGGCTCCTCCTCTTCCTCTTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAGATAGTTAAAGATAACCCTGGGCTCCTCCTCTTCCTCTTCCTC  350

seq1  TTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCCCTCCTTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCCCCCTCCTTTCCTT  400

seq1  CTCCCCTCTCCCCCTTCCCCCCAAGCATCTCACTATGTAGCTCCAGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCTCCCCCTTCCCCCCAAGCATCTCACTATGTAGCTCCAGCTGT  450

seq1  CATGGATCTCACTCTATAGACCAGGCTGGCCTCAAACGCACAGAGACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATCTCACTCTATAGACCAGGCTGGCCTCAAACGCACAGAGACCTG  500

seq1  CCTGCTTCTGCCTCCTGAGCTACCACACGTGGGAACCCTGAACTTCTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTCTGCCTCCTGAGCTACCACACGTGGGAACCCTGAACTTCTGGT  550

seq1  CCTGCTACTGTCACCTCCAAGTGTTGGGATTGTAAGTGTGTGCCACCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTACTGTCACCTCCAAGTGTTGGGATTGTAAGTGTGTGCCACCATG  600

seq1  CTCCATCTATGTGGTGCTGCGGATCAGGGTGCTCACCCCTCTTATTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTATGTGGTGCTGCGGATCAGGGTGCTCACCCCTCTTATTTCCA  650

seq1  CCGAATTGGCACTGTGTCCAAGACAATACCACACACAACTGAAGAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATTGGCACTGTGTCCAAGACAATACCACACACAACTGAAGAAACCC  700

seq1  TATAGAAAGGGGGAAATGTAAAGTACTTGCTATGTTTTTGTTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAGGGGGAAATGTAAAGTACTTGCTATGTTTTTGTTTTTTTTTT  750

seq1  TTTTTCAGAAACCTTTTCCGTAAAGAAGGCCTCTTGGCCTTCCCTGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGAAACCTTTTCCGTAAAGAAGGCCTCTTGGCCTTCCCTGAACA  800

seq1  TCACTTGAGCGCTTACTGTATACTAGACACTGTTCTGTTCTAGAACTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAGCGCTTACTGTATACTAGACACTGTTCTGTTCTAGAACTTTG  850

seq1  ATCTGTGGGAACTCACTGACTCCTTATTAACTTCCCGGGGCGACCCTGAC  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCTGTGGGAACTCACTGACTCCTTATT-ACTTCCCGGGGCGACCCTGAC  899

seq1  CAAAGGGCAGTGTGTGCAGCCAGGAATGACAGGGTTATCTTCACACC-TG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAAAGGGCAGTGTGTGCAGCCAGGAATGACAGGGTTATCTTCACACCTTG  949

seq1  AGGTCACCTTCGAACCACTGTGTACCTTGCCCGTGGGGCCCAGTCACTTG  999
      ||||||||| ||||||||||||||||||| ||||||||  ||||||||||
seq2  AGGTCACCTCCGAACCACTGTGTACCTTGTCCGTGGGG-TCAGTCACTTG  998

seq1  AGGGAAAGAGTCAGCCAGCCTCAAAGAAAAAAAATCCAGGTTTCTGCCGC  1049
      |||  ||||||||| |||||||||||||||||||| |||||||||| |||
seq2  AGG--AAGAGTCAGTCAGCCTCAAAGAAAAAAAAT-CAGGTTTCTG-CGC  1044

seq1  CCACAAATGATTTACTCGGTATTGACTTAACATCTGATGCAAGAGATGTT  1099
      |||| |||||||||||| |||||||||  ||||||||||| ||||||| |
seq2  CCAC-AATGATTTACTC-GTATTGACT--ACATCTGATGC-AGAGATG-T  1088

seq1  GCGTTTGTGTGAGGGGATGAGAAATAT  1126
      ||||||| |||| ||||||| ||||||
seq2  GCGTTTG-GTGA-GGGATGA-AAATAT  1112

seq1: chr10_121028675_121029716
seq2: B6Ng01-332L04.g_70_1120 (reverse)

seq1  ATCT-GTCAGCCTGGCTGGGAGATGGGAAGGGACACTGAGGAAGATTAAC  49
      |||| ||||||   ||||| ||||||||| ||||||||| ||||||  ||
seq2  ATCTCGTCAGCTCTGCTGGAAGATGGGAA-GGACACTGA-GAAGATATAC  48

seq1  GGAAGCC-GTCAGC-AGTGACCAGCCAGCTCTGG-AAACAACGGGCACAA  96
      ||||||| |||||| |||||| |||||||||||| |||||||||   |||
seq2  GGAAGCCAGTCAGCAAGTGACAAGCCAGCTCTGGAAAACAACGGCACCAA  98

seq1  A-TACC-GTTTCCAATCA-CTAGAAACA-TGCTAGCAGGGGAGAGATGGT  142
      | |||| ||||||||||| ||||||||| |||||||| ||||||||||||
seq2  ATTACCGGTTTCCAATCACCTAGAAACATTGCTAGCA-GGGAGAGATGGT  147

seq1  TCA-GCCATTATGGG-TAATGGACACGCTTCCTGAGG-TTAATTCCCAGC  189
      ||| ||||||||||| ||||||||||||||||||||| ||| ||||||||
seq2  TCAGGCCATTATGGGTTAATGGACACGCTTCCTGAGGTTTATTTCCCAGC  197

seq1  AACCACGGGGTGGCTCACAACCATCTGTAATGGCATCTGATG-CCCCCCC  238
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACCACGGGGTGGCTCACAACCATCTGTAATGGCATCTGATGCCCCCCCC  247

seq1  CCCTTTCTGGCATGCAGATGTAAAAGCAGATAGAATACTTACATACATAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTGGCATGCAGATGTAAAAGCAGATAGAATACTTACATACATAA  297

seq1  TGTAAAAAATTCTTAAGAAAAAAAAAAAACCCTAAGGTGGGAAAAGGAGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAAATTCTTAAGAAAAAAAAAAAACCCTAAGGTGGGAAAAGGAGG  347

seq1  CTCTTTGTAATAATTCTGGAAAAGACTTGGTATATTTCACTATGTAGAAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTAATAATTCTGGAAAAGACTTGGTATATTTCACTATGTAGAAT  397

seq1  TTATTTTTTATAAAAAATGTGTTGACACCAGCACCTGCTTCTAAACCGAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTATAAAAAATGTGTTGACACCAGCACCTGCTTCTAAACCGAC  447

seq1  TTAATTAGGAAGCTATTCTCTTATAGAATACACATTGGCATTGAAATATT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGGAAGCTATTCTCTTATAGAATACACATTGGCATTGAAATATT  497

seq1  TAAAGAAATGTAATGGCTATCTATGAAAGATATCTATGAAAGTTTTGATT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAATGTAATGGCTATCTATGAAAGATATCTATGAAAGTTTTGATT  547

seq1  GTTACCCCACAGCTTATGTGTCTACACACACAGAACCGAACATTCCCAAC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCCACAGCTTATGTGTCTACACACACAGAACCGAACATTCCCAAC  597

seq1  TTTACATTCGATTTGTTAGTCAGTTTTCCACTGCTGCATTTCATAAAGAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTCGATTTGTTAGTCAGTTTTCCACTGCTGCATTTCATAAAGAA  647

seq1  CTTTAAAGTTTCATAAAAGGAAAGAAAATTAAGGTACTAATCCCAAGAAA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTTTCATAAAAGGAAAGAAAATTAAGGTACTAATCCCAAGAAA  697

seq1  CGGCTGTCACTGGAAGCTGAGCCGAGCCTCTGTCAGTGTGATGCACACGC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGTCACTGGAAGCTGAGCCGAGCCTCTGTCAGTGTGATGCACACGC  747

seq1  AGACAGACTCAGCACAAGCTTGCAGTGCAGGGCCCACAGCAACCCCACCT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACTCAGCACAAGCTTGCAGTGCAGGGCCCACAGCAACCCCACCT  797

seq1  AAGCAAGGCTTCGGCTACTTCCGAAGATGCTTTCCTCGTTTCTGTGGATG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGCTTCGGCTACTTCCGAAGATGCTTTCCTCGTTTCTGTGGATG  847

seq1  CTTCCCCCAAACTTAAGAAAAGCATGCTTCCTTCGGCTGGTAACTAACAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAAACTTAAGAAAAGCATGCTTCCTTCGGCTGGTAACTAACAA  897

seq1  GAGACAATGCACAACTGAAGGAAGGCAAATGCTAGTTAACTTCTATTTAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATGCACAACTGAAGGAAGGCAAATGCTAGTTAACTTCTATTTAG  947

seq1  TTTCCTTGTGGGTGTTTTGCCATGCTAGGAATTGAACCCAGGAATTGTAC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGTGGGTGTTTTGCCATGCTAGGAATTGAACCCAGGAATTGTAC  997

seq1  GTGCTAGGCAGTGTTCTACCACTGACCCACCTCCAGCTCTTGATTTAAGA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGCAGTGTTCTACCACTGACCCACCTCCAGCTCTTGATTTAAGA  1047

seq1  ATTC  1042
      ||||
seq2  ATTC  1051