BAC Information

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BAC

Clone NameB6Ng01-332L09
Chromosome10 (Build37)
Map Location 30,125,769 - 30,278,346
singlet/doubletdoublet
Overlap geneTrmt11
Upstream geneRspo3, EG630389, Rpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815
Downstream geneHint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332L09.bB6Ng01-332L09.g
ACCGA118732GA118733
length1,1651,119
definitionB6Ng01-332L09.b B6Ng01-332L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,277,177 - 30,278,346)(30,125,769 - 30,126,903)
sequence
gaattctaggtcatcctcagctacctcttgagtttgaggttagtctagac
tacataaaactctgccctcccccaaaaaaaaatagttggaagaaatacat
gtacccacaaaatcaaaaatatttgcattctggctctttgtatgaaaaat
ttgccagcccttgttgtgtatcacttagctggtatatcttagatgttcag
tagctgctaactagtacaaccaaaggggttttaaaaatttacctgagtaa
cttactcatgtctgctggctttcttatatgccagttatgagtaccttaaa
tacaatacatctttcttacaagctcagaccaaaatacaaagtttgcatat
gtataaagctctgtcttatggtgagcagcattggctttgttacttggtaa
ctggtggctgctgaatggagctgtacacatcaatgggaaatataaggttt
cctccctccttcccttcctccttccctctcttcctccttctctctccttt
ctgtctctcttttagaaggatagagtctcaggtttgaaagacactattaa
catgacagttcagtttttgatcccgccacagatcctgtctttgctgtata
tgcttgttctaaagcacctgaggacagcagtaacaatggtacgttaggaa
ccccaagatttggaagccatgtacctttttgtctgctttatagccattgt
atttgaagtgactttggcctagctttagtcatgccttcgtttatcacttg
gtaagtacatacattcaagttactgaacacaggcttcgagttttcttaga
ggtttagagcacttgttactctcaaagaacacccaggttcaagttccagc
accacacataggtgtctcacagctcttcatacctcttatcctaggggatc
agatcatttcttttgggccattcatgtagctactagacatgaacatgggt
gtatatatatacatgcaggtaaaacactcatatttataaaataaataaat
ctagaagattaaatctagtttagtccatctattttagaaaatgaggaaaa
ttatttttcaagaagctgtgcattttggtctgccccttgattttgtgttt
ttctgtgcctgtgagagacactgtgaacaacagcagttatgagaagcaat
ttgactgggggctcg
gaattcccaacaggaaacagctatagacatgaaaagaaaacaccaccact
gtgtttaaagccgaggaacccaaaaaacactgggcagagccttacaaagc
agaacaatagcccaaggaagacgaaaactgtgggagcgccagaccgtgaa
atggagagacaatggacgctggagtggggctggacactcaaagggagcta
ttaattcaagcaagatcaaaacagaaatcaatctagccgtgtgacttcca
gaagatcattaaagactaattactttctgtctacctcaatcgctttattg
ctgtgactggtacgctgtcctttctctgtctagatcctggagagaggagg
aaaatgttttgcagctcagatcatggcaagctgcatgaccccaccctagc
gcctagatactaattcccgagagcttctaaacactcctacagacttacca
gcatacagcttatgtgtgtgactaaggacaactaattacataaagtaata
gcaggagttattccactttcaaaaatgaaagataaaaatcaaggtttatg
agaaacgtgctggaatttcttaaacttttaaatttaattgaattggaggc
agaggactaatacactttgcaaagatgcaacgtgtttcttatagtcagtg
agttagcatgcattttctgcattggtaaatgcattctattgttcgccaag
agttagaacaataacggagatggggcctatggtttttcaagatctgaagc
aaatatcagaacaaaaaattagaaacaaagagaaaatttaccatttaagt
aaattgactttgctaaattgaacttttaagacaggtatttgtctttaaaa
aataacttctatgtaaatgaagaaaatacctaataaataaataaataaat
aactgctaacaatgttgttgtttatcatgtaatcttggcaatatttcatt
ttcctttaaacctaaaaatttccactcatttcattacaataggcctcatc
ttgtctttgtcatatgtggatatatttgctagaaggttccaccgtcttct
gttcttaggaaactaggatttcagtgatgcgtgattatatttgtaagaac
aaattgtagtactcagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_30277177_30278346
seq2: B6Ng01-332L09.b_49_1213 (reverse)

seq1  CGAGCCCCCAGTCAAATGCTTTCCTTCATAAACTGCCTGTG-TCACAGTG  49
      |||||||||||||||||   |||  |||| ||||||   || ||||||||
seq2  CGAGCCCCCAGTCAAATTGCTTC--TCAT-AACTGCTGTTGTTCACAGTG  47

seq1  TCTCTTCACAGCAACAGAAAAACAACAAAAACAAGGGGCAGAACCCAAAA  99
      |||| ||||||  |||||||||| |||||| |||||||||||  ||||||
seq2  TCTC-TCACAGGCACAGAAAAAC-ACAAAATCAAGGGGCAGA--CCAAAA  93

seq1  TGCACAGCTTCTTG-AAAATAATTTTCCTCATTTTCTAAAATAGATGGAC  148
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGCACAGCTTCTTGAAAAATAATTTTCCTCATTTTCTAAAATAGATGGAC  143

seq1  TAAACTAGATTTAATTCTTCTAGATTTATTTATTTTATAAATATGAGTGT  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAACTAGATTTAA-TCTTCTAGATTTATTTATTTTATAAATATGAGTGT  192

seq1  TTTACCTGCATGTATATATATACACCCATGTTCATGTCTAGTAGCTACAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGCATGTATATATATACACCCATGTTCATGTCTAGTAGCTACAT  242

seq1  GAATGG-CCAAAAGAAATGATCTGATCCCCTAGGATAAGAGGTATGAAGA  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCCCAAAAGAAATGATCTGATCCCCTAGGATAAGAGGTATGAAGA  292

seq1  GCTGTGAGACACCTATGTGTGGTGCTGGAACTTGAACCTGGGTGTTCTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGACACCTATGTGTGGTGCTGGAACTTGAACCTGGGTGTTCTTT  342

seq1  GAGAGTAACAAGTGCTCTAAACCTCTAAGAAAACTCGAAGCCTGTGTTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAACAAGTGCTCTAAACCTCTAAGAAAACTCGAAGCCTGTGTTCA  392

seq1  GTAACTTGAATGTATGTACTTACCAAGTGATAAACGAAGGCATGACTAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTGAATGTATGTACTTACCAAGTGATAAACGAAGGCATGACTAAA  442

seq1  GCTAGGCCAAAGTCACTTCAAATACAATGGCTATAAAGCAGACAAAAAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGCCAAAGTCACTTCAAATACAATGGCTATAAAGCAGACAAAAAGG  492

seq1  TACATGGCTTCCAAATCTTGGGGTTCCTAACGTACCATTGTTACTGCTGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGCTTCCAAATCTTGGGGTTCCTAACGTACCATTGTTACTGCTGT  542

seq1  CCTCAGGTGCTTTAGAACAAGCATATACAGCAAAGACAGGATCTGTGGCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTGCTTTAGAACAAGCATATACAGCAAAGACAGGATCTGTGGCG  592

seq1  GGATCAAAAACTGAACTGTCATGTTAATAGTGTCTTTCAAACCTGAGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAAAAACTGAACTGTCATGTTAATAGTGTCTTTCAAACCTGAGACT  642

seq1  CTATCCTTCTAAAAGAGAGACAGAAAGGAGAGAGAAGGAGGAAGAGAGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTCTAAAAGAGAGACAGAAAGGAGAGAGAAGGAGGAAGAGAGGG  692

seq1  AAGGAGGAAGGGAAGGAGGGAGGAAACCTTATATTTCCCATTGATGTGTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAGGGAAGGAGGGAGGAAACCTTATATTTCCCATTGATGTGTA  742

seq1  CAGCTCCATTCAGCAGCCACCAGTTACCAAGTAACAAAGCCAATGCTGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCATTCAGCAGCCACCAGTTACCAAGTAACAAAGCCAATGCTGCT  792

seq1  CACCATAAGACAGAGCTTTATACATATGCAAACTTTGTATTTTGGTCTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAAGACAGAGCTTTATACATATGCAAACTTTGTATTTTGGTCTGA  842

seq1  GCTTGTAAGAAAGATGTATTGTATTTAAGGTACTCATAACTGGCATATAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTAAGAAAGATGTATTGTATTTAAGGTACTCATAACTGGCATATAA  892

seq1  GAAAGCCAGCAGACATGAGTAAGTTACTCAGGTAAATTTTTAAAACCCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAGCAGACATGAGTAAGTTACTCAGGTAAATTTTTAAAACCCCT  942

seq1  TTGGTTGTACTAGTTAGCAGCTACTGAACATCTAAGATATACCAGCTAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTACTAGTTAGCAGCTACTGAACATCTAAGATATACCAGCTAAG  992

seq1  TGATACACAACAAGGGCTGGCAAATTTTTCATACAAAGAGCCAGAATGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACAACAAGGGCTGGCAAATTTTTCATACAAAGAGCCAGAATGCA  1042

seq1  AATATTTTTGATTTTGTGGGTACATGTATTTCTTCCAACTATTTTTTTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTTGATTTTGTGGGTACATGTATTTCTTCCAACTATTTTTTTTT  1092

seq1  GGGGGAGGGCAGAGTTTTATGTAGTCTAGACTAACCTCAAACTCAAGAGG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGCAGAGTTTTATGTAGTCTAGACTAACCTCAAACTCAAGAGG  1142

seq1  TAGCTGAGGATGACCTAGAATTC  1170
      |||||||||||||||||||||||
seq2  TAGCTGAGGATGACCTAGAATTC  1165

seq1: chr10_30125769_30126903
seq2: B6Ng01-332L09.g_67_1185

seq1  GAATTCCCAACAGGAAACAGCTATAGACATGAAAAGAAAACACCACCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACAGGAAACAGCTATAGACATGAAAAGAAAACACCACCACT  50

seq1  GTGTTTAAAGCCGAGGAACCCAAAAAACACTGGGCAGAGCCTTACAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAAGCCGAGGAACCCAAAAAACACTGGGCAGAGCCTTACAAAGC  100

seq1  AGAACAATAGCCCAAGGAAGACGAAAACTGTGGGAGCGCCAGACCGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATAGCCCAAGGAAGACGAAAACTGTGGGAGCGCCAGACCGTGAA  150

seq1  ATGGAGAGACAATGGACGCTGGAGTGGGGCTGGACACTCAAAGGGAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGACAATGGACGCTGGAGTGGGGCTGGACACTCAAAGGGAGCTA  200

seq1  TTAATTCAAGCAAGATCAAAACAGAAATCAATCTAGCCGTGTGACTTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCAAGCAAGATCAAAACAGAAATCAATCTAGCCGTGTGACTTCCA  250

seq1  GAAGATCATTAAAGACTAATTACTTTCTGTCTACCTCAATCGCTTTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCATTAAAGACTAATTACTTTCTGTCTACCTCAATCGCTTTATTG  300

seq1  CTGTGACTGGTACGCTGTCCTTTCTCTGTCTAGATCCTGGAGAGAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTGGTACGCTGTCCTTTCTCTGTCTAGATCCTGGAGAGAGGAGG  350

seq1  AAAATGTTTTGCAGCTCAGATCATGGCAAGCTGCATGACCCCACCCTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTGCAGCTCAGATCATGGCAAGCTGCATGACCCCACCCTAGC  400

seq1  GCCTAGATACTAATTCCCGAGAGCTTCTAAACACTCCTACAGACTTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGATACTAATTCCCGAGAGCTTCTAAACACTCCTACAGACTTACCA  450

seq1  GCATACAGCTTATGTGTGTGACTAAGGACAACTAATTACATAAAGTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAGCTTATGTGTGTGACTAAGGACAACTAATTACATAAAGTAATA  500

seq1  GCAGGAGTTATTCCACTTTCAAAAATGAAAGATAAAAATCAAGGTTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTTATTCCACTTTCAAAAATGAAAGATAAAAATCAAGGTTTATG  550

seq1  AGAAACGTGCTGGAATTTCTTAAACTTTTAAATTTAATTGAATTGGAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACGTGCTGGAATTTCTTAAACTTTTAAATTTAATTGAATTGGAGGC  600

seq1  AGAGGACTAATACACTTTGCAAAGATGCAACGTGTTTCTTATAGTCAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTAATACACTTTGCAAAGATGCAACGTGTTTCTTATAGTCAGTG  650

seq1  AGTTAGCATGCATTTTCTGCATTGGTAAATGCATTCTATTGTTCGCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCATGCATTTTCTGCATTGGTAAATGCATTCTATTGTTCGCCAAG  700

seq1  AGTTAGAACAATAACGGAGATGGGGCCTATGGTTTTTCAAGATCTGAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAACAATAACGGAGATGGGGCCTATGGTTTTTCAAGATCTGAAGC  750

seq1  AAATATCAGAACAAAAAATTAGAAACAAAGAGAAAATTTACCATTTAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAGAACAAAAAATTAGAAACAAAGAGAAAATTTACCATTTAAGT  800

seq1  AAATTGACTTTGCTAAATTGAACTTTTAAGACAGGTATTTGTCTTTAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAATTGACTTTGCTAAATTGAACTTTTAAGACAGGTATTTGTCTTT-AAA  849

seq1  AAATAACTTCTATGTAAATGAAGAAAATACCTAATAAATAAATAAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTCTATGTAAATGAAGAAAATACCTAATAAATAAATAAATAAA  899

seq1  TAACTGCTAACAATGTTGTTGTTTATCATGTAATCTTGGCAATAATTTCA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAACTGCTAACAATGTTGTTGTTTATCATGTAATCTTGGCAAT-ATTTCA  948

seq1  TTTTCCTTTAAACCTAAAAATTTCCACTCATTTTCATTACAAATAGGCCT  1000
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  TTTTCCTTTAAACCTAAAAATTTCCACTCA-TTTCATTAC-AATAGGCCT  996

seq1  CAATCTTGTCTTTGTCAATATGTGGATATATTTGCTAGAAGGTTCCAACC  1050
      | |||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  C-ATCTTGTCTTTGTC-ATATGTGGATATATTTGCTAGAAGGTTCC-ACC  1043

seq1  GTCCTTCCTTGTTTCTTAGGAAACTAGGGATTTTCCAGTGATGCGTGATT  1100
      || ||||  || |||||||||||||| ||||||  |||||||||||||||
seq2  GT-CTTC--TG-TTCTTAGGAAACTA-GGATTT--CAGTGATGCGTGATT  1086

seq1  ATATTTGTAAAAGAACAAATGTTAGTACTCAGAAA  1135
      ||||||||  ||||||||||  |||||||||||||
seq2  ATATTTGT--AAGAACAAATTGTAGTACTCAGAAA  1119