BAC Information

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BAC

Clone NameB6Ng01-332P02
Chromosome10 (Build37)
Map Location 44,085,109 - 44,259,151
singlet/doubletdoublet
Overlap geneLOC100041506, Prdm1
Upstream genePdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1, Atg5
Downstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332P02.bB6Ng01-332P02.g
ACCGA118898GA118899
length241527
definitionB6Ng01-332P02.b B6Ng01-332P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,085,109 - 44,085,349)(44,258,625 - 44,259,151)
sequence
agagcctaagctactacttacctatcattgtgctcctcgaaacttgcatg
accttgctccgaccatagagagcttgttggaactgaagcctggtgataag
gatgcacagggtatgtccctgaggatgagggacaagtgtccccagccatg
ttgtgattttcccaatcagcgaaactaagtgggttatcctaagacttcag
gtttaacattgagcaattagctttggggtgggggtggggga
tgattccacaaagtaaaaccggttactactcaacttcctcatttttaaaa
gtggtggcgacaagaagtcagggtgactgccagaccagtgctccttgctg
cggaggaggtgggggagcagtcaggagtcctagtttgcaggctaagttct
ggagatgcaggtacctctgtccctgagccatgccagcctggtgtggagct
gtgtctcacacgtgggttctgcaggctcatcccacaccgacctataagtc
tcctcgaagctgggctgagggagcccacaccacaggcctgtctgtggcca
gtgctcttgagattctcggttcccaaaaccgcagttcccgatttctagtt
tccttatagatgagatgtggggatcttcagaggggatcccggaccgccaa
gcaaggctggggaaacccaaagcccctgtggttgacgctaagttgtttgg
gtatcagcagagactctgagagatggtgtttaaaatgcctattttgggtc
agttgagctggagggaggccacacccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_44085109_44085349
seq2: B6Ng01-332P02.b_54_294

seq1  AGAGCCTAAGCTACTACTTACCTATCATTGTGCTCCTCGAAACTTGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTAAGCTACTACTTACCTATCATTGTGCTCCTCGAAACTTGCATG  50

seq1  ACCTTGCTCCGACCATAGAGAGCTTGTTGGAACTGAAGCCTGGTGATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCTCCGACCATAGAGAGCTTGTTGGAACTGAAGCCTGGTGATAAG  100

seq1  GATGCACAGGGTATGTCCCTGAGGATGAGGGACAAGTGTCCCCAGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACAGGGTATGTCCCTGAGGATGAGGGACAAGTGTCCCCAGCCATG  150

seq1  TTGTGATTTTCCCAATCAGCGAAACTAAGTGGGTTATCCTAAGACTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTTCCCAATCAGCGAAACTAAGTGGGTTATCCTAAGACTTCAG  200

seq1  GTTTAACATTGAGCAATTAGCTTTGGGGTGGGGGTGGGGGA  241
      |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAACATTGAGCAATTAGCTTTGGGGTGGGGGTGGGGGA  241

seq1: chr10_44258625_44259151
seq2: B6Ng01-332P02.g_79_605 (reverse)

seq1  GGGGTGTGGCCTCCCTCCAGCTCAACTGACCCAAAATAGGCATTTTAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTGGCCTCCCTCCAGCTCAACTGACCCAAAATAGGCATTTTAAAC  50

seq1  ACCATCTCTCAGAGTCTCTGCTGATACCCAAACAACTTAGCGTCAACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTCAGAGTCTCTGCTGATACCCAAACAACTTAGCGTCAACCAC  100

seq1  AGGGGCTTTGGGTTTCCCCAGCCTTGCTTGGCGGTCCGGGATCCCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTTGGGTTTCCCCAGCCTTGCTTGGCGGTCCGGGATCCCCTCTG  150

seq1  AAGATCCCCACATCTCATCTATAAGGAAACTAGAAATCGGGAACTGCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCCCCACATCTCATCTATAAGGAAACTAGAAATCGGGAACTGCGGT  200

seq1  TTTGGGAACCGAGAATCTCAAGAGCACTGGCCACAGACAGGCCTGTGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAACCGAGAATCTCAAGAGCACTGGCCACAGACAGGCCTGTGGTG  250

seq1  TGGGCTCCCTCAGCCCAGCTTCGAGGAGACTTATAGGTCGGTGTGGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCCTCAGCCCAGCTTCGAGGAGACTTATAGGTCGGTGTGGGATG  300

seq1  AGCCTGCAGAACCCACGTGTGAGACACAGCTCCACACCAGGCTGGCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAGAACCCACGTGTGAGACACAGCTCCACACCAGGCTGGCATGG  350

seq1  CTCAGGGACAGAGGTACCTGCATCTCCAGAACTTAGCCTGCAAACTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGACAGAGGTACCTGCATCTCCAGAACTTAGCCTGCAAACTAGGA  400

seq1  CTCCTGACTGCTCCCCCACCTCCTCCGCAGCAAGGAGCACTGGTCTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTGCTCCCCCACCTCCTCCGCAGCAAGGAGCACTGGTCTGGCA  450

seq1  GTCACCCTGACTTCTTGTCGCCACCACTTTTAAAAATGAGGAAGTTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTGACTTCTTGTCGCCACCACTTTTAAAAATGAGGAAGTTGAGT  500

seq1  AGTAACCGGTTTTACTTTGTGGAATCA  527
      |||||||||||||||||||||||||||
seq2  AGTAACCGGTTTTACTTTGTGGAATCA  527