BAC Information

Click to search

BAC

Clone NameB6Ng01-332P13
Chromosome10 (Build37)
Map Location 126,993,159 - 127,137,600
singlet/doubletdoublet
Overlap geneLrp1, LOC100043054, Stat6, Nab2, BC030440
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4
Downstream geneMyo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332P13.bB6Ng01-332P13.g
ACCGA118920GA118921
length1,210653
definitionB6Ng01-332P13.b B6Ng01-332P13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,136,381 - 127,137,600)(126,993,159 - 126,993,809)
sequence
caggacagcctgggctacagagtggtgccctatctaaacaataccttggg
gagataagagcatgtcaaagaaaaatgacacatggaagacacttgtggcc
caaagccccatgtctgagtctatgtgaccacttctgtccccgctgaggtt
aaagggtatccatatgctttgcttattcccagtgggttctagggcctgcc
atgtatgggtccccattgttgacaatgtccaactcaagtggtccccttgc
ttcagccttccaagttcaggcggacactaattaccatgcctgacttccaa
acctccttttcgaggtagtcaccatctggtctccaacagcaacagaatcc
ataatcgagtcacgaagatgccactgggttagctctgggttagctcaact
gcctacgttcccccaaagaaatactctctgctataagactacaagcacaa
acatttagacacacttgtaaagtgcaaggctactctgtgtgcttctccct
tggtttcagtgcctgcctaaggggagagctccgtacacctgcccctgtcc
tctcagcatgcaaatgcaggcacccatcttggacccgagtccatgggaat
actagaaggcattattttcctgtctgcacacttcaacttgtaccactcag
tccacaagagctgtgggcacagctaaggtccattttaactctgggatcca
tctcagcatacctttcaacaattatgtaacccgtccaaattcttcacggg
tatcaaggcctgggggaattctctggcctatttgggtccttttattcacc
aaacctcaatcacccaagtagggtaggctaaagagaacacaactgattca
cagagggctatgcccttgaatgggcggtcatatggtaaaatggaacagtg
ggacccaaagagccatctcagacaaaccaccctctgctgagaaaaacaag
aatgtgggtggggaactggcttctttctcatttcaaggtaaccagttatc
aagttgctaaacttttcctggctttgatcagtatgttctcataaggaaag
gaaactgtaaagttgtatgccgctgcctccttatgtttcccataacggga
gtcatgtttatgactcaggtcgaacccattagaaggcaatgcattcatac
catcaagaccccattctggaccagcttctgatcgagtatgctggacacag
ccgcctcatg
gaattcattggggccgcaggttgggtactctgtggtgggggaggggatga
tgaggctggacctccagcacggctaggcagggctactcctccagtcacgg
gactcaccacactcaggggattcatcagagccatcagcacagtcacggtc
atggtcgcacacgaaatgcttgggaatacacaagcggttctggcacatga
actcacggtcatcacaggtgctgttgtacactggggatggaggcagagtc
cctcctcaggcctgccctactcctgccctgccctacttactagctgttga
tagtcactcccccacccccaatcctaagtttcctgcaacatgagtggtag
caatgggcagaatgggaggggtctggatctgtgatctccttaaacgcacg
gctcccactgaagttcttcctacccttgacctcatttgccagtgtttgca
aagcaaggctgcgaggcttgatgcccacccattcctcacggcctctccca
ctcacggcagccagcagtgacactctcatcccgcgccatcggtacagtcc
ttgtccccatcacagagccagcgctcagggacacacacgtgggtgccggg
acaggagaatgaggaggggccacttgccttgcctcctgcatgagcgggca
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127136381_127137600
seq2: B6Ng01-332P13.b_56_1265 (reverse)

seq1  CATGAG--CGCTGTGTGCCAGCAATCATCGATCCAGAAGCTGGTTCCAGG  48
      ||||||   ||||||| ||||| ||  ||||| |||||||||| ||||| 
seq2  CATGAGGCGGCTGTGT-CCAGC-ATACTCGAT-CAGAAGCTGG-TCCAGA  46

seq1  AGTGGGGGTCTTGATGGTATTGGAAATGCATTG-CTTCTAATGGGTCTGA  97
      |   ||||||||||||||||    ||||||||| ||||||||||||  ||
seq2  A--TGGGGTCTTGATGGTAT---GAATGCATTGCCTTCTAATGGGTTCGA  91

seq1  CCTGAGTTCATAAAACATGACTCCCGTTAATGGGAACATAA-GAGGCAGC  146
      |||||| |||| |||||||||||||||||  || ||||||| ||||||| 
seq2  CCTGAG-TCAT-AAACATGACTCCCGTTATGGGAAACATAAGGAGGCAG-  138

seq1  CGGCATACAACTTTACAGTTTTCCTTTCCTTATGAGAACATACTGATCAA  196
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CGGCATACAACTTTACAG-TTTCCTTTCCTTATGAGAACATACTGATCAA  187

seq1  AGCCAGGAAAAGTTTAGCAACTTTGATAACTTGGTTACCTTGAAATGAGA  246
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  AGCCAGGAAAAGTTTAGCAAC-TTGATAAC-TGGTTACCTTGAAATGAGA  235

seq1  AAG-AGCCAGTTCCCCACCCACATTCTTG-TTTTCTCAGCAGAGGGTGGT  294
      ||| ||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  AAGAAGCCAGTTCCCCACCCACATTCTTGTTTTTCTCAGCAGAGGGTGG-  284

seq1  TTTGTCTGAGATGGCTCTTTGGGTCCCACTGTTCCATTTTACCATATGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGAGATGGCTCTTTGGGTCCCACTGTTCCATTTTACCATATGAC  334

seq1  CGCCCATTCAAGGGCATAGCCCTCTGTGAATCAGTTGTGTTCTCTTTAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCATTCAAGGGCATAGCCCTCTGTGAATCAGTTGTGTTCTCTTTAGC  384

seq1  CTACCCTACTTGGGTGATTGAGGTTTGGTGAATAAAAGGACCCAAATAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTACTTGGGTGATTGAGGTTTGGTGAATAAAAGGACCCAAATAGG  434

seq1  CCAGAGAATTCCCCCAGGCCTTGATACCCGTGAAGAATTTGGACGGGTTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAATTCCCCCAGGCCTTGATACCCGTGAAGAATTTGGACGGGTTA  484

seq1  CATAATTGTTGAAAGGTATGCTGAGATGGATCCCAGAGTTAAAATGGACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTGTTGAAAGGTATGCTGAGATGGATCCCAGAGTTAAAATGGACC  534

seq1  TTAGCTGTGCCCACAGCTCTTGTGGACTGAGTGGTACAAGTTGAAGTGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTGCCCACAGCTCTTGTGGACTGAGTGGTACAAGTTGAAGTGTG  584

seq1  CAGACAGGAAAATAATGCCTTCTAGTATTCCCATGGACTCGGGTCCAAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGAAAATAATGCCTTCTAGTATTCCCATGGACTCGGGTCCAAGA  634

seq1  TGGGTGCCTGCATTTGCATGCTGAGAGGACAGGGGCAGGTGTACGGAGCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCCTGCATTTGCATGCTGAGAGGACAGGGGCAGGTGTACGGAGCT  684

seq1  CTCCCCTTAGGCAGGCACTGAAACCAAGGGAGAAGCACACAGAGTAGCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTAGGCAGGCACTGAAACCAAGGGAGAAGCACACAGAGTAGCCT  734

seq1  TGCACTTTACAAGTGTGTCTAAATGTTTGTGCTTGTAGTCTTATAGCAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTACAAGTGTGTCTAAATGTTTGTGCTTGTAGTCTTATAGCAGA  784

seq1  GAGTATTTCTTTGGGGGAACGTAGGCAGTTGAGCTAACCCAGAGCTAACC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTTCTTTGGGGGAACGTAGGCAGTTGAGCTAACCCAGAGCTAACC  834

seq1  CAGTGGCATCTTCGTGACTCGATTATGGATTCTGTTGCTGTTGGAGACCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCATCTTCGTGACTCGATTATGGATTCTGTTGCTGTTGGAGACCA  884

seq1  GATGGTGACTACCTCGAAAAGGAGGTTTGGAAGTCAGGCATGGTAATTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGACTACCTCGAAAAGGAGGTTTGGAAGTCAGGCATGGTAATTAG  934

seq1  TGTCCGCCTGAACTTGGAAGGCTGAAGCAAGGGGACCACTTGAGTTGGAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGCCTGAACTTGGAAGGCTGAAGCAAGGGGACCACTTGAGTTGGAC  984

seq1  ATTGTCAACAATGGGGACCCATACATGGCAGGCCCTAGAACCCACTGGGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACAATGGGGACCCATACATGGCAGGCCCTAGAACCCACTGGGA  1034

seq1  ATAAGCAAAGCATATGGATACCCTTTAACCTCAGCGGGGACAGAAGTGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAAGCATATGGATACCCTTTAACCTCAGCGGGGACAGAAGTGGT  1084

seq1  CACATAGACTCAGACATGGGGCTTTGGGCCACAAGTGTCTTCCATGTGTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGACTCAGACATGGGGCTTTGGGCCACAAGTGTCTTCCATGTGTC  1134

seq1  ATTTTTCTTTGACATGCTCTTATCTCCCCAAGGTATTGTTTAGATAGGGC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTGACATGCTCTTATCTCCCCAAGGTATTGTTTAGATAGGGC  1184

seq1  ACCACTCTGTAGCCCAGGCTGTCCTG  1220
      ||||||||||||||||||||||||||
seq2  ACCACTCTGTAGCCCAGGCTGTCCTG  1210

seq1: chr10_126993159_126993809
seq2: B6Ng01-332P13.g_68_720

seq1  GAATTCATTGGGGCCGCAGGTTGGGTACTCTGTGGTGGGGGAGGGGATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGGGCCGCAGGTTGGGTACTCTGTGGTGGGGGAGGGGATGA  50

seq1  TGAGGCTGGACCTCCAGCACGGCTAGGCAGGGCTACTCCTCCAGTCACGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGGACCTCCAGCACGGCTAGGCAGGGCTACTCCTCCAGTCACGG  100

seq1  GACTCACCACACTCAGGGGATTCATCAGAGCCATCAGCACAGTCACGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACCACACTCAGGGGATTCATCAGAGCCATCAGCACAGTCACGGTC  150

seq1  ATGGTCGCACACGAAATGCTTGGGAATACACAAGCGGTTCTGGCACATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCGCACACGAAATGCTTGGGAATACACAAGCGGTTCTGGCACATGA  200

seq1  ACTCACGGTCATCACAGGTGCTGTTGTACACTGGGGATGGAGGCAGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACGGTCATCACAGGTGCTGTTGTACACTGGGGATGGAGGCAGAGTC  250

seq1  CCTCCTCAGGCCTGCCCTACTCCTGCCCTGCCCTACTTACTAGCTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGGCCTGCCCTACTCCTGCCCTGCCCTACTTACTAGCTGTTGA  300

seq1  TAGTCACTCCCCCACCCCCAATCCTAAGTTTCCTGCAACATGAGTGGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACTCCCCCACCCCCAATCCTAAGTTTCCTGCAACATGAGTGGTAG  350

seq1  CAATGGGCAGAATGGGAGGGGTCTGGATCTGTGATCTCCTTAAACGCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGCAGAATGGGAGGGGTCTGGATCTGTGATCTCCTTAAACGCACG  400

seq1  GCTCCCACTGAAGTTCTTCCTACCCTTGACCTCATTTGCCAGTGTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACTGAAGTTCTTCCTACCCTTGACCTCATTTGCCAGTGTTTGCA  450

seq1  AAGCAAGGCTGCGAGGCTTGATGCCCACCCATTCCTCACGGCCTCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGCTGCGAGGCTTGATGCCCACCCATTCCTCACGGCCTCTCCCA  500

seq1  CTCACGGCAGCCAGCAGTGACACTCTCAT-CCGCGCCATCGGTACAGTCC  549
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCACGGCAGCCAGCAGTGACACTCTCATCCCGCGCCATCGGTACAGTCC  550

seq1  TTGTCGCCATCACAGAGCCAGCGCTCAGGGACACACACGTGGGTGCCGGG  599
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCCATCACAGAGCCAGCGCTCAGGGACACACACGTGGGTGCCGGG  600

seq1  ACAGGAGAAGGAGGAGGGGCCACATGTCTTGCCTTCTGCATGAG-GGGCA  648
      ||||||||| ||||||||||||| || ||||||| ||||||||| |||||
seq2  ACAGGAGAATGAGGAGGGGCCACTTGCCTTGCCTCCTGCATGAGCGGGCA  650

seq1  AGG  651
       ||
seq2  GGG  653