BAC Information

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BAC

Clone NameB6Ng01-333B12
Chromosome10 (Build37)
Map Location 73,433,985 - 73,567,443
singlet/doubletdoublet
Overlap genePcdh15
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333B12.bB6Ng01-333B12.g
ACCGA119004GA119005
length1,0061,098
definitionB6Ng01-333B12.b B6Ng01-333B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,433,985 - 73,435,002)(73,566,348 - 73,567,443)
sequence
gaattcagagaaaacaaagctggataattctttctttctttctttttttc
actagatattttctttatttacatttcaaatgttatcccctttcctggtt
tcccctctgaaaaccccctatcccctccctacctccccctgctcagcaac
ccacccattcctgcttcctggccctggcattcccctatactggggcagag
aaccttcacaggatcaagggcacatctttcaatatttttccatttacttt
taattggcaagtaattatacatttatggggtcacatgagtaaactttcct
gcagagtaatcgttgaaggtatgcagtgatcattatatttaacaagtcat
atgacttcatacacataaggtgtatatttttttttactaataatagtaat
tattcctactggctcagggtctgcaaggtcactcctaagtagctgttaat
tttctctaaatgaaaagcatgctagcattaaaccattttaggtccacgtt
gcttttgttagttgaataattagaaccaatgtaccttttctaagtgagtc
agatttatgtccacactgtttagttaaaataggatgtaagggtatacttt
taggtgagacataaaattctttacctgcactgagtaccttaatgaagcgg
actactcccaagcctactgtttgggtgtgtttaccaagaaaaaaatttat
ttttcctcacactaatattaagatattggatactttgctcctacttgttc
aaataaatgagtcgtacaccgtttttcatgtctgaaaaaaaaacctgata
gcatgttttatgtacagagtgcaaacataggtgataatgtatggctcttc
tcttgcacaaatacataggaaagatatgccaacaaaattgtacagaattg
actgttcctcataatgcgtggcatatattatatgcaatagaataatctgc
ctgatccccacttataaatcctctgaaaaggtctgttgtgattcagagag
caatag

gaattccagtaatgtttagtcagaattggagagtttccacatagtgaatt
taccaatatccagtagttatgaaatcaccagattttataaagtaagacca
acttcaaagctctgacatgcaaatatttactcttgattcacattgtcaaa
aaatttcaagaaactatcacaaaggtttattttaaatgtttctataagat
acttctatgaaaaaatactcctgtgaagtaatttttatgtgtgtacacat
acattcctgcatgtaaaaatatatgcaacgcagtgtgttatgactacctt
tttctctcacaataatgaaaatgcatactaacccatattaatatgcaata
aatatccccttagctttctaaagagaaaacaggaaatgacaattccgtat
acaaagataactatttccaatcctttgcttccttttgtgtactgagcctt
ttaggtaactctttgcaaggatatctaaggtacatttttgctagtttaaa
aatatttcaggatgttttgacaatttttgctcatatcttttcagcgttta
tttcatatggatgcaattcaagtcaaggtaagaataataaagtataaatc
agctttgcaaagacatataaatcatgaatttagcagctaattcagatctc
aatattgtgcacggtacaaaacaatctattgctgacgactaatttcaact
ccaactgtcaaagtgacaagaaaacgagctattaaagtcagcctccctca
caaatgcgtgtggcattttactgacaaacagtaaccacctaaaaaaatga
gcaatattaggaagattgaaacccataatgtaacggatgacagccaaggg
cataatgatgtcctccatccgctagtatgacaggggatttttacttcacc
ataaattttgtttcttcctttttccccatggattatgaaacacatacctc
cccttctcccttcacaattctcttccttagtctaatagcattccagaact
ttcttgccgacagtggaatgtttatcaatatttcacagtgctgggacact
gctatgtctcagtgttagagaaaaaaaaacagttatctatttttttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73433985_73435002
seq2: B6Ng01-333B12.b_47_1052

seq1  GAATTCAGAGAAAACAAAGCTGGATAATTCTTTCTTTCTTTCTTTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAAAACAAAGCTGGATAATTCTTTCTTTCTTTCTTTTTTTC  50

seq1  ACTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATATTTTCTTTATTTACATTTCAAATGTTATCCCCTTTCCTGGTT  100

seq1  TCCCCTCTGAAAACCCCCTATCCCCTCCCTACCTCCCCCTGCTCAGCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGAAAACCCCCTATCCCCTCCCTACCTCCCCCTGCTCAGCAAC  150

seq1  CCACCCATTCCTGCTTCCTGGCCCTGGCATTCCCCTATACTGGGGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCATTCCTGCTTCCTGGCCCTGGCATTCCCCTATACTGGGGCAGAG  200

seq1  AACCTTCACAGGATCAAGGGCACATCTTTCAATATTTTTCCATTTACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCACAGGATCAAGGGCACATCTTTCAATATTTTTCCATTTACTTT  250

seq1  TAATTGGCAAGTAATTATACATTTATGGGGTCACATGAGTAAACTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGCAAGTAATTATACATTTATGGGGTCACATGAGTAAACTTTCCT  300

seq1  GCAGAGTAATCGTTGAAGGTATGCAGTGATCATTATATTTAACAAGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAATCGTTGAAGGTATGCAGTGATCATTATATTTAACAAGTCAT  350

seq1  ATGACTTCATACACATAAGGTGTATATTTTTTTTTACTAATAATAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTCATACACATAAGGTGTATATTTTTTTTTACTAATAATAGTAAT  400

seq1  TATTCCTACTGGCTCAGGGTCTGCAAGGTCACTCCTAAGTAGCTGTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTACTGGCTCAGGGTCTGCAAGGTCACTCCTAAGTAGCTGTTAAT  450

seq1  TTTCTCTAAATGAAAAGCATGCTAGCATTAAACCATTTTAGGTCCACGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAAATGAAAAGCATGCTAGCATTAAACCATTTTAGGTCCACGTT  500

seq1  GCTTTTGTTAGTTGAATAATTAGAACCAATGTACCTTTTCTAAGTGAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTTAGTTGAATAATTAGAACCAATGTACCTTTTCTAAGTGAGTC  550

seq1  AGATTTATGTCCACACTGTTTAGTTAAAATAGGATGTAAGGGTATACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATGTCCACACTGTTTAGTTAAAATAGGATGTAAGGGTATACTTT  600

seq1  TAGGTGAGACATAAAATTCTTTACCTGCACTGAGTACCTTAATGAAGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGAGACATAAAATTCTTTACCTGCACTGAGTACCTTAATGAAGCGG  650

seq1  ACTACTCCCAAGCCTACTGTTTGGGTGTGTTTACCAAGAAAAAAATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCCCAAGCCTACTGTTTGGGTGTGTTTACCAAGAAAAAAATTTAT  700

seq1  TTTTCCTCACACTAATATTAAGATATTGGATACTTTGCTCCTACTTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCACACTAATATTAAGATATTGGATACTTTGCTCCTACTTGTTC  750

seq1  AAATAAATGAGTCGTACACCGTTTTTCATGTCTGAAAAAAAAACCTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATGAGTCGTACACCGTTTTTCATGTCTGAAAAAAAAACCTGATA  800

seq1  GCATGTTTTATGTACAGAGTGCAAACATAGGGTGATAATGTATGGCTCTT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCATGTTTTATGTACAGAGTGCAAACATA-GGTGATAATGTATGGCTCTT  849

seq1  CTCTTGCACAAATACATAGGAAAGATATGGCCAACAAAATTGTACAGAAT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCTTGCACAAATACATAGGAAAGATAT-GCCAACAAAATTGTACAGAAT  898

seq1  TGACTGTTCCTCATTATGCGTGGCATAATTAATTATATGCAAATTAGAAT  950
      |||||||||||||| ||||||||||||    |||||||||||  ||||||
seq2  TGACTGTTCCTCATAATGCGTGGCATA---TATTATATGCAA--TAGAAT  943

seq1  AATTCCTGCCTGATACACCACTTATAA--TCTCTGATAGAGTCTGTTGTT  998
      |||  ||||||||| | ||||||||||   |||||| |  ||||||||  
seq2  AAT--CTGCCTGAT-CCCCACTTATAAATCCTCTGAAAAGGTCTGTTG--  988

seq1  TGATTTCAGAGAGGCAATAG  1018
      ||| |||||||| |||||||
seq2  TGA-TTCAGAGA-GCAATAG  1006


seq1: chr10_73566348_73567443
seq2: B6Ng01-333B12.g_67_1164 (reverse)

seq1  AGAAAAAAATAGATAAACTGTTTTTTTTTTCTCTAAACACTGAGAACAAT  50
      |||||||||||||| ||||| ||||||||||||| ||||||||||   ||
seq2  AGAAAAAAATAGAT-AACTG-TTTTTTTTTCTCT-AACACTGAGA--CAT  45

seq1  AGCAGGTGTCCCAAGCACTGTGAAATATTTGAT-AACATTCCACTGTCAG  99
      |||| ||||||| |||||||||||||| ||||| |||||||||||||| |
seq2  AGCA-GTGTCCC-AGCACTGTGAAATA-TTGATAAACATTCCACTGTCGG  92

seq1  GCAGGAAGTTCT-GAATGCTA-TAGACT-AGGAAGAGAA-TGTGAA-GGA  144
        || ||||||| |||||||| |||||| |||||||||| |||||| |||
seq2  CAAGAAAGTTCTGGAATGCTATTAGACTAAGGAAGAGAATTGTGAAGGGA  142

seq1  GAAGGGGAGTTA--TGCTTCATATTCATTTGGGGAAAAAGGAAGAAACAA  192
      ||||||||| ||  || |||||| ||   |||||||||||||||||||||
seq2  GAAGGGGAGGTATGTGTTTCATAATC-CATGGGGAAAAAGGAAGAAACAA  191

seq1  AAGTTA-GCTGAAGAATAAATATCCAGTCATACTAGCGGATGGAGGACAT  241
      || ||| | ||||| | ||||  || ||||||||||||||||||||||||
seq2  AATTTATGGTGAAGTAAAAATCCCCTGTCATACTAGCGGATGGAGGACAT  241

seq1  CATTATGCCCTTGGCTGTCATCCGTTACATTATGGGTTTCAATCTTCCTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGCCCTTGGCTGTCATCCGTTACATTATGGGTTTCAATCTTCCTA  291

seq1  ATATTGCTCATTATTT--AGTGGTTACTGTTTGTCAGTAAAATGCCACAC  339
      |||||||||||| |||   |||||||||||||||||||||||||||||||
seq2  ATATTGCTCATTTTTTTAGGTGGTTACTGTTTGTCAGTAAAATGCCACAC  341

seq1  GCATTTGTGAGGGAGGCTGACTTTAATAGCTCGTTTTCTTGTCACTTTGA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTGAGGGAGGCTGACTTTAATAGCTCGTTTTCTTGTCACTTTGA  391

seq1  CAGTTGGAGTTGAAATTAGTCGTCAGCAATAGATTGTTTTGTACCGTGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGTTGAAATTAGTCGTCAGCAATAGATTGTTTTGTACCGTGCA  441

seq1  CAATATTGAGATCTGAATTAGCTGCTAAATTCATGATTTATATGTCTTTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTGAGATCTGAATTAGCTGCTAAATTCATGATTTATATGTCTTTG  491

seq1  CAAAGCTGATTTATACTTTATTATTCTTACCTTGACTTGAATTGCATCCA  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGATTTATACTTTATTATTCTTACCTTGACTTGAATTGCATCCA  541

seq1  TATGAAATAAACGCTGAAAAGATATGAGCAAAAATTGTCAAAACATCCTG  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATAAACGCTGAAAAGATATGAGCAAAAATTGTCAAAACATCCTG  591

seq1  AAATATTTTTAAACTAGCAAAAATGTACCTTAGATATCCTTGCAAAGAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTAAACTAGCAAAAATGTACCTTAGATATCCTTGCAAAGAGT  641

seq1  TACCTAAAAGGCTCAGTACACAAAAGGAAGCAAAGGATTGGAAATAGTTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAAAAGGCTCAGTACACAAAAGGAAGCAAAGGATTGGAAATAGTTA  691

seq1  TCTTTGTATACGGAATTGTCATTTCCTGTTTTCTCTTTAGAAAGCTAAGG  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATACGGAATTGTCATTTCCTGTTTTCTCTTTAGAAAGCTAAGG  741

seq1  GGATATTTATTGCATATTAATATGGGTTAGTATGCATTTTCATTATTGTG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTATTGCATATTAATATGGGTTAGTATGCATTTTCATTATTGTG  791

seq1  AGAGAAAAAGGTAGTCATAACACACTGCGTTGCATATATTTTTACATGCA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAGGTAGTCATAACACACTGCGTTGCATATATTTTTACATGCA  841

seq1  GGAATGTATGTGTACACACATAAAAATTACTTCACAGGAGTATTTTTTCA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTATGTGTACACACATAAAAATTACTTCACAGGAGTATTTTTTCA  891

seq1  TAGAAGTATCTTATAGAAACATTTAAAATAAACCTTTGTGATAGTTTCTT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTATCTTATAGAAACATTTAAAATAAACCTTTGTGATAGTTTCTT  941

seq1  GAAATTTTTTGACAATGTGAATCAAGAGTAAATATTTGCATGTCAGAGCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTTGACAATGTGAATCAAGAGTAAATATTTGCATGTCAGAGCT  991

seq1  TTGAAGTTGGTCTTACTTTATAAAATCTGGTGATTTCATAACTACTGGAT  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTGGTCTTACTTTATAAAATCTGGTGATTTCATAACTACTGGAT  1041

seq1  ATTGGTAAATTCACTATGTGGAAACTCTCCAATTCTGACTAAACATTACT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAAATTCACTATGTGGAAACTCTCCAATTCTGACTAAACATTACT  1091

seq1  GGAATTC  1096
      |||||||
seq2  GGAATTC  1098


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