BAC Information

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BAC

Clone NameB6Ng01-333E04
Chromosome10 (Build37)
Map Location 124,541,093 - 124,615,082
singlet/doubletdoublet
Overlap genenone
Upstream gene4930503E24Rik, LOC671416
Downstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994, Lrig3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333E04.bB6Ng01-333E04.g
ACCGA119124GA119125
length1,1321,088
definitionB6Ng01-333E04.b B6Ng01-333E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,613,935 - 124,615,082)(124,541,093 - 124,542,192)
sequence
gaattctctctctaagcatttcccactaagctctagatttttatattaaa
gagcctaatttggttttccagttcacagtcttactgactaaagatattta
tggagcaggctgtttttaacacagcctcttgcttaggtctaaagctttct
ccttcctttatagagacccaattttctgcctccattctctaccatttgtt
tctataaacaggctactgtacagaggtcaacagtgagagtctaccatcct
gaaattgagcacatgattatcatttaatgtgcccctctctctctcttttt
tcctcattcagggataaaataaacctcacttggaggtaggatgcgagaga
aaattttatttttttgcatggaacaaatgcatctgctgagagcttaggac
ctaaatgcttttgctcttaaaatgaattatatatgggtaaagcatctcca
ttgtatcatataccctcagacaaagacaatagaggtttcctgtaaaaaac
agtacttaaaacagcggggttgagggaaacttaagatgccaaatggacca
cctttagactgcttttagactcatgataggcctctgaagtcagcatgcca
aaggccctgtactattatgccattatgcctaagtccctgagcacagtgac
cattacggagaattaaagggccgtccattttcaatgactgctgattattc
tgctgctctgctgaggacttccaattacaatgtcagtgagcaggcacaca
ccaattcactggtccctgcctcatggcttgtctacttgcctcagcaagcc
actaaacagatatgttaaatatgggtgtaggctactctggttcacaacaa
gtttaagccaaacagataaaacaagagtataagagggccagacctgtgtc
agttgtcaagagaaagtgatattacacacacacacacacacacacacaca
cacacacacacacacacactccactattagaaagatagatagatagatag
ataatagatagatagatatgatgatatggatatgatgattagatgatttg
attgatttgttccgaatcgatttgattgatagatttggtagatgtagatg
tcgatgagatgtcattagatttgaatagatat

gaattccttagtgtgcaactgcattactcccacatagcctgactaaatgg
aaaaaagaaaagaatatataccttgacttagtgtggctaaggcttggatt
ttgtgcctcctgtttataatctgttaatacacttttaaaaacagtcagtg
ggtcgtttttgtttgttttgtttttgtttttgtttgtttgttttgttctg
ttttgtgttgaaaacaaatttaacttgtttctttttccaaccaatccact
atggggcaattcaactgttcttttctccttataacatttctttatttaac
caacttacattcagctgataatcaaatagtacattttaataaatgacatc
aatagatgtgttatttgaacaatgtaggaatccctggtattatcacataa
gtgcttagcatctctggttttatgatacaggaaggaggaatagccatgct
gcagattatgctcattgtaaagctctagggaatgttatataccatacttg
ttggtgagaggcatatttgctgtggcctaaatttaattacaagaaacaaa
gcctggaaagaagacatggagatggaggggaatcagggcagagctccagg
ctgagcccttcacactccttaattcatgctaaagttttaattagaatcct
atcacaatccccaattgcttctgaatactagttacaacacaaccaaccca
gaagcatcaaatgcttctacttataggcaactcttcattccccaaaccca
ccctacctcacatcctcttaccttcctaatctctagccaagttggattca
acgtgaccaattatcagctttcatccccaaagtttcactatgaaatgctc
atctttgggctcaatgtatagtctgggtaccaaagcacttgcttaacatg
cacaagacccaggtttcattcctagtaccacacaaagccagcatggtggc
acatacctgtattcaggacctctagaagtggaggcaaagggatttaaagt
tcatctcaaagtatttcagattgtcttagactagatgagcttctgcctgt
acatgagtattgcatagctcctgtccactgaaattcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_124613935_124615082
seq2: B6Ng01-333E04.b_46_1177 (reverse)

seq1  ATATCTAT----ATCT----ACATCTACATCTACATCTACATCTACCTAT  42
      ||||||||    ||||    |||||| |||| ||||||||||||||| | 
seq2  ATATCTATTCAAATCTAATGACATCT-CATCGACATCTACATCTACC-AA  48

seq1  ATCTATCTATATCTATATCTGTATCTGTATCTATATCTATATCTATATCT  92
      ||||||| ||    | ||| |  || | |   | ||| ||    | ||| 
seq2  ATCTATCAAT---CAAATC-GATTCGGAA--CAAATCAAT---CAAATC-  88

seq1  ATCTATATCATCTATATCTATATCTATCTATATCTATCTATCTATTTATC  142
      ||||| |||||| ||||| ||||| ||| ||||||||||||||| |||||
seq2  ATCTA-ATCATC-ATATCCATATC-ATC-ATATCTATCTATCTA-TTATC  133

seq1  TATCTATCTATCTATCTTTCTATATATGTGTGAGTGTGTGTGTGTGTGTG  192
      |||||||||||||||||||||| |||   |||   | |||||||||||||
seq2  TATCTATCTATCTATCTTTCTA-ATA---GTG---GAGTGTGTGTGTGTG  176

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATATCACTTTCTCTTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAATATCACTTTCTCTTG  226

seq1  ACAACTGACACAGGTCTGGCCCTCTTATACTCTTGTTTTATCTGTTTGGC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGACACAGGTCTGGCCCTCTTATACTCTTGTTTTATCTGTTTGGC  276

seq1  TTAAACTTGTTGTGAACCAGAGTAGCCTACACCCATATTTAACATATCTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTGTTGTGAACCAGAGTAGCCTACACCCATATTTAACATATCTG  326

seq1  TTTAGTGGCTTGCTGAGGCAAGTAGACAAGCCATGAGGCAGGGACCAGTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGGCTTGCTGAGGCAAGTAGACAAGCCATGAGGCAGGGACCAGTG  376

seq1  AATTGGTGTGTGCCTGCTCACTGACATTGTAATTGGAAGTCCTCAGCAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGTGTGCCTGCTCACTGACATTGTAATTGGAAGTCCTCAGCAGA  426

seq1  GCAGCAGAATAATCAGCAGTCATTGAAAATGGACGGCCCTTTAATTCTCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAATAATCAGCAGTCATTGAAAATGGACGGCCCTTTAATTCTCC  476

seq1  GTAATGGTCACTGTGCTCAGGGACTTAGGCATAATGGCATAATAGTACAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGTCACTGTGCTCAGGGACTTAGGCATAATGGCATAATAGTACAG  526

seq1  GGCCTTTGGCATGCTGACTTCAGAGGCCTATCATGAGTCTAAAAGCAGTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGGCATGCTGACTTCAGAGGCCTATCATGAGTCTAAAAGCAGTC  576

seq1  TAAAGGTGGTCCATTTGGCATCTTAAGTTTCCCTCAACCCCGCTGTTTTA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGGTCCATTTGGCATCTTAAGTTTCCCTCAACCCCGCTGTTTTA  626

seq1  AGTACTGTTTTTTACAGGAAACCTCTATTGTCTTTGTCTGAGGGTATATG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGTTTTTTACAGGAAACCTCTATTGTCTTTGTCTGAGGGTATATG  676

seq1  ATACAATGGAGATGCTTTACCCATATATAATTCATTTTAAGAGCAAAAGC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATGGAGATGCTTTACCCATATATAATTCATTTTAAGAGCAAAAGC  726

seq1  ATTTAGGTCCTAAGCTCTCAGCAGATGCATTTGTTCCATGCAAAAAAATA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTCCTAAGCTCTCAGCAGATGCATTTGTTCCATGCAAAAAAATA  776

seq1  AAATTTTCTCTCGCATCCTACCTCCAAGTGAGGTTTATTTTATCCCTGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTCTCGCATCCTACCTCCAAGTGAGGTTTATTTTATCCCTGAA  826

seq1  TGAGGAAAAAAGAGAGAGAGAGGGGCACATTAAATGATAATCATGTGCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAAAAAGAGAGAGAGAGGGGCACATTAAATGATAATCATGTGCTC  876

seq1  AATTTCAGGATGGTAGACTCTCACTGTTGACCTCTGTACAGTAGCCTGTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGGATGGTAGACTCTCACTGTTGACCTCTGTACAGTAGCCTGTT  926

seq1  TATAGAAACAAATGGTAGAGAATGGAGGCAGAAAATTGGGTCTCTATAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAACAAATGGTAGAGAATGGAGGCAGAAAATTGGGTCTCTATAAA  976

seq1  GGAAGGAGAAAGCTTTAGACCTAAGCAAGAGGCTGTGTTAAAAACAGCCT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGAAAGCTTTAGACCTAAGCAAGAGGCTGTGTTAAAAACAGCCT  1026

seq1  GCTCCATAAATATCTTTAGTCAGTAAGACTGTGAACTGGAAAACCAAATT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATAAATATCTTTAGTCAGTAAGACTGTGAACTGGAAAACCAAATT  1076

seq1  AGGCTCTTTAATATAAAAATCTAGAGCTTAGTGGGAAATGCTTAGAGAGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTTTAATATAAAAATCTAGAGCTTAGTGGGAAATGCTTAGAGAGA  1126

seq1  GAATTC  1148
      ||||||
seq2  GAATTC  1132


seq1: chr10_124541093_124542192
seq2: B6Ng01-333E04.g_69_1156

seq1  GAATTCCTTAGTGTGCAACTGCATTACTCCCACATAGCCTGACTAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTGTGCAACTGCATTACTCCCACATAGCCTGACTAAATGG  50

seq1  AAAAAAGAAAAGAATATATACCTTGACTTAGTGTGGCTAAGGCTTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAAGAATATATACCTTGACTTAGTGTGGCTAAGGCTTGGATT  100

seq1  TTGTGCCTCCTGTTTATAATCTGTTAATACACTTTTAAAAACAGTCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCTCCTGTTTATAATCTGTTAATACACTTTTAAAAACAGTCAGTG  150

seq1  GGTCGTTTTTGTTTGTTTTGTTTTTGTTTTTGTTTGTTTGTTTTGTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTTTTGTTTGTTTTGTTTTTGTTTTTGTTTGTTTGTTTTGTTCTG  200

seq1  TTTTGTGTTGAAAACAAATTTAACTTGTTTCTTTTTCCAACCAATCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTGAAAACAAATTTAACTTGTTTCTTTTTCCAACCAATCCACT  250

seq1  ATGGGGCAATTCAACTGTTCTTTTCTCCTTATAACATTTCTTTATTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCAATTCAACTGTTCTTTTCTCCTTATAACATTTCTTTATTTAAC  300

seq1  CAACTTACATTCAGCTGATAATCAAATAGTACATTTTAATAAATGACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTACATTCAGCTGATAATCAAATAGTACATTTTAATAAATGACATC  350

seq1  AATAGATGTGTTATTTGAACAATGTAGGAATCCCTGGTATTATCACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGTGTTATTTGAACAATGTAGGAATCCCTGGTATTATCACATAA  400

seq1  GTGCTTAGCATCTCTGGTTTTATGATACAGGAAGGAGGAATAGCCATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGCATCTCTGGTTTTATGATACAGGAAGGAGGAATAGCCATGCT  450

seq1  GCAGATTATGCTCATTGTAAAGCTCTAGGGAATGTTATATACCATACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTATGCTCATTGTAAAGCTCTAGGGAATGTTATATACCATACTTG  500

seq1  TTGGTGAGAGGCATATTTGCTGTGGCCTAAATTTAATTACAAGAAACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGAGAGGCATATTTGCTGTGGCCTAAATTTAATTACAAGAAACAAA  550

seq1  GCCTGGAAAGAAGACATGGAGATGGAGGGGAATCAGGGCAGAGCTCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAAAGAAGACATGGAGATGGAGGGGAATCAGGGCAGAGCTCCAGG  600

seq1  CTGAGCCCTTCACACTCCTTAATTCATGCTAAAGTTTTAATTAGAATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCTTCACACTCCTTAATTCATGCTAAAGTTTTAATTAGAATCCT  650

seq1  ATCACAATCCCCAATTGCTTCTGAATACTAGTTACAACACAACCAACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAATCCCCAATTGCTTCTGAATACTAGTTACAACACAACCAACCCA  700

seq1  GAAGCATCAAATGCTTCTACTTATAGGCAACTCTTCATTCCCCAAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCAAATGCTTCTACTTATAGGCAACTCTTCATTCCCCAAACCCA  750

seq1  CCCTACCTCACATCCTCTTACCTTCCTAATCTCTAGCCAAGTTGGATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTCACATCCTCTTACCTTCCTAATCTCTAGCCAAGTTGGATTCA  800

seq1  ACGTGACCAATTATCAGCTTTCATCCCCAAAGTTTCACTATGAAATGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACCAATTATCAGCTTTCATCCCCAAAGTTTCACTATGAAATGCTC  850

seq1  ATCTTTGGGCTCAATGTATAGTCTGGGTACCAAAGCACTTGCTTAACATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGGCTCAATGTATAGTCTGGGTACCAAAGCACTTGCTTAACATG  900

seq1  CACAAGACCCAGGGTTTCATTCCTAGTACCACACAAAGCCAGCATGGTGG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACAAGACCCA-GGTTTCATTCCTAGTACCACACAAAGCCAGCATGGTGG  949

seq1  CACATACCTGTAATTCCAGGA-CTCTAGAAGTGGAGGCAAAAGGGATTTA  999
      ||||||||||||  | ||||| |||||||||||||||| |||||||||||
seq2  CACATACCTGTA--TTCAGGACCTCTAGAAGTGGAGGC-AAAGGGATTTA  996

seq1  AAGTTCATCTTCAAAGTAATTTCAGGATTGTCTTAGACTAGATGAGGCTC  1049
      ||||||||| ||||||| |||||| |||||||||||||||||||||  ||
seq2  AAGTTCATC-TCAAAGT-ATTTCA-GATTGTCTTAGACTAGATGAGCTTC  1043

seq1  TGCCCTGTACCATGAGTATTTGCAATAGCTCCCTGTCCACTGAAAATTCA  1099
      || |||||| |||||||| |||| |||||| ||||||||||| |||||||
seq2  TG-CCTGTA-CATGAGTA-TTGC-ATAGCT-CCTGTCCACTG-AAATTCA  1087

seq1  T  1100
      |
seq2  T  1088


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