BAC Information

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BAC

Clone NameB6Ng01-333L08
Chromosome2 (Build37)10 (Build37)
Map Location 36,899,971 - 36,900,60970,984,996 - 70,985,123
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1
Downstream geneOlfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333L08.bB6Ng01-333L08.g
ACCGA119414GA119415
length1,219262
definitionB6Ng01-333L08.b B6Ng01-333L08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,899,971 - 36,900,609)(70,984,996 - 70,985,123)
sequence
gaattccaaataaagatattatttcctcagtaagtttcttatggtttgag
atgtttctttcttggctgggaatacctcagttcctcctgagaaggaatct
ataaacaataaaggatatttgtaaccaaactttcctggttttacttcagt
gaaatctatttctaagtaaactgctagtggggttcctcttttgccgcaga
ccctctgggcccctttgtctgcatggaacgggtctctagtctcgggtgga
caaagcgtaggatgagtgacaaacagacgcacacaggagaggtcgtgtgg
aatctgaatgtatttttcaaattgagcatcagactttttatgcagaagac
aataaggaagttgggtgacatattcataaggtacaaaggaggtaaccgga
atcttacataaaacagaggaatgctaacacaaaaggtctaacgggaacca
cctgggatagaattcattgataacaactgggataaacaagggctccatct
aagattcactaatcttagaagccagggtcaagggctacatgacctagcca
tagttcctattttagtctattatatagtccaccttccccttaggccattg
taaatacgtgtgtatgggtgtaacttcactatagttctaagtatctattc
tgatttctcctttgatctgaaacttcctttttcctagtgatggtaaattc
ctgtgtaagggagtgacctaggttttatagtgtagtactagaggctattc
tgattagcaacattcctattgaatttctagcccatgatcttcctcaagga
cgttctaggactgttggaacattggtggaaggctttagctatgtcagaat
tcaatcttaaaaggcacttataataggaaaatactaaaagagagcacgtg
gatccatacacaagactaacacaggaatggaaaattaatgtatgggttaa
agggaatgccagactccagagaagagcttccgtgaagctctttgcctcat
gagtgacttttaagcctcttggcttcagctgactcgacagagcacaatgg
cactctttctttctttctctctctctttttttttaaaaagctgagttgta
tgtgcgtcacctccatgaagaatgtttgcacagaaatctagtattctttt
atttagaaatttccttaattacaattccagtttatccctttctgggtgtc
ccctctgtgaaaattcccc
aaatagattatggtttacatacaatatggattttatggagcacacagaaa
atgaaatataggtggatctatgaattcgaagagaaagaacactgaccata
atggtatatgactttaataccagcaatctggaagtaaaagcaggtggatt
ctgtgaatttgaaacaagcctggtctacatagcgagtttcaggatagcca
gaggcatattgaagaagaaaaagaagaagaaggagaaaaggagaaagagg
aggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36899971_36900609
seq2: B6Ng01-333L08.b_636_1263

seq1  AGGCCATTGTAAATACGTGTGTATGGGTGTAACTTCACTATAGTTCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATTGTAAATACGTGTGTATGGGTGTAACTTCACTATAGTTCTAAG  50

seq1  TATCTATTCTGATTTCTCCTTTGATCTGAAACTTCCTTTTTCCTAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTCTGATTTCTCCTTTGATCTGAAACTTCCTTTTTCCTAGTGAT  100

seq1  GGTAAATTCCTGTGTAAGGGAGTGACCTAGGTTTTATAGTGTAGTACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATTCCTGTGTAAGGGAGTGACCTAGGTTTTATAGTGTAGTACTAG  150

seq1  AGGCTATTCTGATTAGCAACATTCCTATTGAATTTCTAGCCCATGATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTCTGATTAGCAACATTCCTATTGAATTTCTAGCCCATGATCTT  200

seq1  CCTCAAGGACGTTCTAGGACTGTTGGAACATTGGTGGAAGGCTTTAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGACGTTCTAGGACTGTTGGAACATTGGTGGAAGGCTTTAGCTA  250

seq1  TGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGAAAATACTAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGAATTCAATCTTAAAAGGCACTTATAATAGGAAAATACTAAAAGA  300

seq1  GAGCACGTGGATCCATACACAAGACTAACACAGGAATGGAAAATTAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACGTGGATCCATACACAAGACTAACACAGGAATGGAAAATTAATGT  350

seq1  ATGGGTTAAAGGGAATGCCAGACTCCAGGAGAAGAGCTTCCGTGAAGCTC  400
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGGGTTAAAGGGAATGCCAGACTCCA-GAGAAGAGCTTCCGTGAAGCTC  399

seq1  TTTGCCTCATGAGTGACTTTTAAGCCTCTTGGCTTCAGCTGACTCGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTGCCTCATGAGTGACTTTTAAGCCTCTTGGCTTCAGCTGACTCGA-CA  448

seq1  GAGCAC-ATGGCACTCTTTCTTTCTTTTCTTCTCTTCTCTTTTTTTTTTA  499
      |||||| ||||||||||||||||||    ||||| ||||| |||||||| 
seq2  GAGCACAATGGCACTCTTTCTTTCT----TTCTC-TCTCTCTTTTTTTTT  493

seq1  AAAAAGCTGAGTTGTATGTGCGTTCCACCTCCCATG-AGGATG-TTGCAC  547
      |||||||||||||||||||||||  ||||| ||||| || ||| ||||||
seq2  AAAAAGCTGAGTTGTATGTGCGT--CACCT-CCATGAAGAATGTTTGCAC  540

seq1  AGATATCTAGTAATTCTTTATTTTTTAAGATATTTTCTTTATTTACATTT  597
      ||| |||||||| |  |||||||    ||| | |||| ||| ||||| ||
seq2  AGAAATCTAGTATTCTTTTATTT----AGA-AATTTCCTTAATTACAATT  585

seq1  CAAATGTTATCCCCTTTCCTGGTGTCCCCTC--TGAAAATCCCC-  639
      | | | |||| |||||||  |||||||||||  ||||||| ||| 
seq2  CCAGT-TTAT-CCCTTTCTGGGTGTCCCCTCTGTGAAAATTCCCC  628

seq1: chr10_70984996_70985123
seq2: B6Ng01-333L08.g_241_336 (reverse)

seq1  CCTCCTCCTCCTCCTCCTTTTCCTTTTCCTCCCTCCTCCTTCTTCTTCTT  50
      |||||||||||||||| || |||||||        |||||||||||||||
seq2  CCTCCTCCTCCTCCTCTTTCTCCTTTT--------CTCCTTCTTCTTCTT  42

seq1  TTTGTTTTTTTTTTTTTTTGAGACAGGATTTTTCTGTGTAGCC-CTGGCT  99
      ||| || ||              ||  ||           ||| ||||||
seq2  TTTCTTCTT--------------CAATAT-----------GCCTCTGGCT  67

seq1  GTCCTGGAACTCACTCTGTAGACCAGGCT  128
       ||||| ||||| || |||||||||||||
seq2  ATCCTGAAACTCGCTATGTAGACCAGGCT  96