BAC Information

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BAC

Clone NameB6Ng01-334J11
Chromosome10 (Build37)
Map Location 31,273,833 - 31,274,747
singlet/doubletsinglet
Overlap geneIbrdc1
Upstream geneTrmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294
Downstream geneLOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334J11.bB6Ng01-334J11.g
ACCGA120059GA120060
length1,223912
definitionB6Ng01-334J11.b B6Ng01-334J11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctacccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaccaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaagtgaaagatctgtatgataaaaacttcaaatctctga
agaaagacattaaagaagatctcagaagatggaaagatctcccatgctca
tggattggcaggatcaacattgtaaaaatggctatcttgccaaaagcaat
ctacagattcaatgcaatccccatcaaaattccaaatcaattcttcaacg
aattggaaggagcaatttgcaaatttgtctggaataacaaaaaacctagg
atagcaaaaaattttctcaaggataaaagaacttctggtggaatcaccat
gccagacttaaagctttactacagagcaattgtgataaaaactgcatggt
actggtatagagacagacaagtagaccaatggaatagaattgaagaccca
gaaatgaacccacacacctatggtcacttgatcttcgacaagggagctaa
aaccatccagtggaagaaagacagcattttcaacaattggtgctggcaca
actggttgttatcgtgtagaagatgtgaattgatccatacttatctcctt
gtactagtcaaatctagtggatcaaggaacttcacataaaatcagagaaa
ctgaaacttatagagagaaagttgggaaagctgaagaatatggcaccagg
gaaaatcttgaacagacagcatgctgtgctgtaagatcgagaatgacaat
tggactatgaactcaagtctgcagcaaagaacgttccatgaacaaaagac
acccacacggattggaaaaggac
tcaatttcctgtatttcagtgtgtgtatgtgtgcgtgtgaatgtgtatgt
gtatgtgtaagtgtctatgtatgcaagaaagagatgaactgattctgaat
atttaatggctttccagttaaagttcacaccatgaataaaatgtatactt
gtaaggctaattagcattgttttgtagaactacccagcttaagtttgttt
cagaaggttattggcttgtgtagtcactataatcaaggaatcttttggct
tacatctaatgacatcactaaataccttatattcacttctaagatgcatt
ttcatggttctgatatgtcctgctatgatgactgttcttttttcacatgt
gtggcacagttagagatgtacataatgcctgcaagttcctttcttaatta
aaagcccatttagttagtgggggggaggggtctgtttatgctgtgacata
tatctggaaatgcaatgctttatatgagtgtggcttttaaattcagtaca
tgatgatttgcttgccaaaaatctgtctctgaatacttcttagttccatt
gctggtcttcactgcagggcttggaaacatggaatagccctgtgtgctgc
ttctctgtcgttttgaaaccagaggtctgccttgtgcctgttaagttttg
ataaagaaatttgataagaaattaactcaagaagattaagtacacattgg
ggcaagacagtgaaataatgcccaaaacttgtttatttatgtcaaaagaa
aggtgtttaaaatggtaaactggatagagacgggaaggcatggagtggaa
gggctggtctatggctgcctatcttgaggtataaacctttggagagctaa
gtgaagcagtctgtgtattttccacatagtttgattcttgatctattggt
ttacttaccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31273833_31274747
seq2: B6Ng01-334J11.g_74_985 (reverse)

seq1  TTTGGTAAGTAAAACAATATGATTCAAGAATCAAAACTATGTGAAAAATA  50
      ||||||||||||| ||||| || ||||||||| |||||||||| ||||||
seq2  TTTGGTAAGTAAACCAATA-GA-TCAAGAATC-AAACTATGTGGAAAATA  47

seq1  CACAGACTGCTTTCACTTAGGCTCTCCAAAGGTTTATACCTCAAGAT-GG  99
      |||||||||| |||||||| ||||||||||||||||||||||||||| ||
seq2  CACAGACTGC-TTCACTTA-GCTCTCCAAAGGTTTATACCTCAAGATAGG  95

seq1  CAGCCATAGACCAGCCCTTCCACTCCATGCCTTCCCGTCTCTATCCAGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATAGACCAGCCCTTCCACTCCATGCCTTCCCGTCTCTATCCAGTT  145

seq1  TACCATTTTAAACACCTTTCTTTTGACATAAATAAACAAGTTTT-GGCAT  198
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACCATTTTAAACACCTTTCTTTTGACATAAATAAACAAGTTTTGGGCAT  195

seq1  TATTTCACTGTCTTGCCCCAATGTGTACTTAATCTTCTTGAGTTAATTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACTGTCTTGCCCCAATGTGTACTTAATCTTCTTGAGTTAATTTC  245

seq1  TTATCAAATTTCTTTATCAAAACTTAACAGGCACAAGGCAGACCTCTGGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAATTTCTTTATCAAAACTTAACAGGCACAAGGCAGACCTCTGGT  295

seq1  TTCAAAACGACAGAGAAGCAGCACACAGGGCTATTCCATGTTTCCAAGCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACGACAGAGAAGCAGCACACAGGGCTATTCCATGTTTCCAAGCC  345

seq1  CTGCAGTGAAGACCAGCAATGGAACTAAGAAGTATTCAGAGACAGATTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGAAGACCAGCAATGGAACTAAGAAGTATTCAGAGACAGATTTT  395

seq1  TGGCAAGCAAATCATCATGTACTGAATTTAAAAGCCACACTCATATAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCAAATCATCATGTACTGAATTTAAAAGCCACACTCATATAAAG  445

seq1  CATTGCATTTCCAGATATATGTCACAGCATAAACAGACCCCTCCCCCCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATTTCCAGATATATGTCACAGCATAAACAGACCCCTCCCCCCCA  495

seq1  CTAACTAAATGGGCTTTTAATTAAGAAAGGAACTTGCAGGCATTATGTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAATGGGCTTTTAATTAAGAAAGGAACTTGCAGGCATTATGTAC  545

seq1  ATCTCTAACTGTGCCACACATGTGAAAAAAGAACAGTCATCATAGCAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAACTGTGCCACACATGTGAAAAAAGAACAGTCATCATAGCAGGA  595

seq1  CATATCAGAACCATGAAAATGCATCTTAGAAGTGAATATAAGGTATTTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGAACCATGAAAATGCATCTTAGAAGTGAATATAAGGTATTTAG  645

seq1  TGATGTCATTAGATGTAAGCCAAAAGATTCCTTGATTATAGTGACTACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCATTAGATGTAAGCCAAAAGATTCCTTGATTATAGTGACTACAC  695

seq1  AAGCCAATAACCTTCTGAAACAAACTTAAGCTGGGTAGTTCTACAAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAATAACCTTCTGAAACAAACTTAAGCTGGGTAGTTCTACAAAACA  745

seq1  ATGCTAATTAGCCTTACAAGTATACATTTTATTCATGGTGTGAACTTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTAGCCTTACAAGTATACATTTTATTCATGGTGTGAACTTTAA  795

seq1  CTGGAAAGCCATTAAATATTCAGAATCAGTTCATCTCTTTCTTGCATACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGCCATTAAATATTCAGAATCAGTTCATCTCTTTCTTGCATACA  845

seq1  TAGACACTTACACATACACATACACATTCACACGCACACATACACACACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTTACACATACACATACACATTCACACGCACACATACACACACT  895

seq1  GAAATACAGGAAATTGA  915
      |||||||||||||||||
seq2  GAAATACAGGAAATTGA  912