BAC Information

Click to search

BAC

Clone NameB6Ng01-335A07
Chromosome10 (Build37)
Map Location 86,443,713 - 86,621,278
singlet/doubletdoublet
Overlap geneStab2
Upstream geneBpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik
Downstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335A07.bB6Ng01-335A07.g
ACCGA120379GA120380
length1,0311,249
definitionB6Ng01-335A07.b B6Ng01-335A07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,443,713 - 86,444,728)(86,620,031 - 86,621,278)
sequence
gaattcatcttttaatcgtgttactcttagaggcttctccttgtgtgggc
ttgtcattaaggtaaatcaacagtggggaagtgggaggcagcacttctgg
gtggagcagatctcggaacttacccggcaggagcagcttccggttccttc
catgccttcatcacaaacacccctgccaccacacggtgcccttgctcctc
ctggacactctggaacagtcaaacattcattctagactgagcaaaggcat
gctacaaggtgcagccagccacttagtgtgttagttgccagagacaaaaa
ccaatcgaaggccggccccaacagtctgatcacaagctggaggccagcct
gggctacccagtgacttcaaagccatcatgagtgaataacaagaccctgt
cttgaaatactaaggttgggatgagtagctttttgctagaacacttgcaa
aggtgtggggactgcatggggggactgggatttgaacttgggagcagcaa
gggtggggcttatcaggtgcagtggggtggtgacttgacccattctgtga
tgagcttattttttaaaataattttattttttattatttttgtgtgtatt
ggtgttttgcttccatgtctgactattcaagggtgtcagatcccttggaa
ctggagccatagatggttgtgagctactatgtgggtgctgggaattgagt
ccatacccaccagaagagcagccagtgctcttatccactgagccatatct
ccagccctaaccactgagcaaactctccagtcccccatgatgcatgtaag
ctgagcaaaggaggttcgagtttcccctagggctgggttgcaaaggaagt
aagtgtgcatttttgcacttctgctgaattagagctatgacctagaatct
ttcactagaggattttcccagtcagtcaacaaacactctaccatacattt
gcatggcatactgaggcagtagccaacatttatcaaagaatccagtttgg
gacaatgtctcttatcccagatagtatttaa
gaattcactttgccttggggggaaatttctaggtaacccacctctccccc
aaattaaagagacatcacttgctactaacccttatgctatgatcaagaga
tatgttgttgtcgttgctgttgtcgtcgtcattgtcatggatagacatag
taagccatagaataaaaagctagaactcttaggtatgcctactgcaggca
ctcttgactacttataacattcagaagttacaggaaattttggagaaaac
aaggaaacaccacggcccttgttgagcaggaaatccagattcgtgtaaaa
tggatttatagctaaagacacttcttataaaactattctgtaggatagag
aaattggcagattgttcaatggttaaaagtgctggatcttcttccagggg
gttggaagtccattcccagcccctatgtagcaggtcacagtcctctgtaa
ctctggtttcaaaaggtcatatggcctcttatgatcttcaagggaaccag
atatgcatgcagggcacagccatacataaagattttttaaaaataagtaa
atttaaaactgcaaaacattctgtaggaataatcaactctagatatataa
aaatttatattccaaaataatttctcagaaatctagcccaatggtgtcag
aaactgtaaaatacactaaacaatgtcagtagcagtgtaatttcatatat
aataacataagaaaagttcttctgaaattaaaaaattatctgaaattatt
tacaatgttgaaaatgaaattgctaaaagcaaaggctttttaaatgtcct
tatatttatagaaaataagccaaaaaaaatttatgatcaattaagagata
acattaatgaagcattattcactatattgtgcaaatttgatacaaaatat
cattttttaattttgtaagttctgatttatactcctatattggtattatt
tgtggtgcatttatataagatattttatttaatgtcttatataataatat
tgataatcatttaatgagtattttaaagctaaaatgtttagtttaatacc
attaagaagtggacattttcattttgcctccaggacccacaaatatacta
acaggtcttgacagtgttttcaaaaaacatttagaattaaatcttaaatc
ttcatagttaaattaagccagtataggaatccttgagcccacttaaaata
aggtctgcactcgttcctacgttcacttatagagagccttctatacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_86443713_86444728
seq2: B6Ng01-335A07.b_48_1078

seq1  GAATTCATCTTTTAATCGTGTTACTCTTAGAGGCTTCTCCTTGTGTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTTAATCGTGTTACTCTTAGAGGCTTCTCCTTGTGTGGGC  50

seq1  TTGTCATTAAGGTAAATCAACAGTGGGGAAGTGGGAGGCAGCACTTCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTAAGGTAAATCAACAGTGGGGAAGTGGGAGGCAGCACTTCTGG  100

seq1  GTGGAGCAGATCTCGGAACTTACCCGGCAGGAGCAGCTTCCGGTTCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCAGATCTCGGAACTTACCCGGCAGGAGCAGCTTCCGGTTCCTTC  150

seq1  CATGCCTTCATCACAAACACCCCTGCCACCACACGGTGCCCTTGCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTTCATCACAAACACCCCTGCCACCACACGGTGCCCTTGCTCCTC  200

seq1  CTGGACACTCTGGAACAGTCAAACATTCATTCTAGACTGAGCAAAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTCTGGAACAGTCAAACATTCATTCTAGACTGAGCAAAGGCAT  250

seq1  GCTACAAGGTGCAGCCAGCCACTTAGTGTGTTAGTTGCCAGAGACAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAAGGTGCAGCCAGCCACTTAGTGTGTTAGTTGCCAGAGACAAAAA  300

seq1  CCAATCGAAGGCCGGCCCCAACAGTCTGATCACAAGCTGGAGGCCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCGAAGGCCGGCCCCAACAGTCTGATCACAAGCTGGAGGCCAGCCT  350

seq1  GGGCTACCCAGTGACTTCAAAGCCATCATGAGTGAATAACAAGACCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACCCAGTGACTTCAAAGCCATCATGAGTGAATAACAAGACCCTGT  400

seq1  CTTGAAATACTAAGGTTGGGATGAGTAGCTTTTTGCTAGAACACTTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATACTAAGGTTGGGATGAGTAGCTTTTTGCTAGAACACTTGCAA  450

seq1  AGGTGTGGGGACTGCATGGGGGGACTGGGATTTGAACTTGGGAGCAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGGGACTGCATGGGGGGACTGGGATTTGAACTTGGGAGCAGCAA  500

seq1  GGGTGGGGCTTATCAGGTGCAGTGGGGTGGTGACTTGACCCATTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGCTTATCAGGTGCAGTGGGGTGGTGACTTGACCCATTCTGTGA  550

seq1  TGAGCTTATTTTTTAAAATAATTTTATTTTTTATTATTTTTGTGTGTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTATTTTTTAAAATAATTTTATTTTTTATTATTTTTGTGTGTATT  600

seq1  GGTGTTTTGCTTCCATGTCTGACTATTCAAGGGTGTCAGATCCCTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTGCTTCCATGTCTGACTATTCAAGGGTGTCAGATCCCTTGGAA  650

seq1  CTGGAGCCATAGATGGTTGTGAGCTACTATGTGGGTGCTGGGAATTGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCCATAGATGGTTGTGAGCTACTATGTGGGTGCTGGGAATTGAGT  700

seq1  CCATACCCACCAGAAGAGCAGCCAGTGCTCTTATCCACTGAGCCATATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCCACCAGAAGAGCAGCCAGTGCTCTTATCCACTGAGCCATATCT  750

seq1  CCAGCCCTAACCACTGAGCAAACTCTCCAGTCCCCCATGATGCATGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTAACCACTGAGCAAACTCTCCAGTCCCCCATGATGCATGTAAG  800

seq1  CTGAGCAAAGGAGG-TCGAGTTTCCCCTAGGGCT-GGTTGCAAA-GAAGT  847
      |||||||||||||| ||||||||||||||||||| ||||||||| |||||
seq2  CTGAGCAAAGGAGGTTCGAGTTTCCCCTAGGGCTGGGTTGCAAAGGAAGT  850

seq1  AAGTGTGCA-TTTTGCACTTCTGCTGAATTAGAGCTATGACCTAG-ATC-  894
      ||||||||| ||||||||||||||||||||||||||||||||||| ||| 
seq2  AAGTGTGCATTTTTGCACTTCTGCTGAATTAGAGCTATGACCTAGAATCT  900

seq1  TTCACTAGAGGATTTT-CCAGTCAGTCAACAAACACTCTACCAAACA-TT  942
      |||||||||||||||| |||||||||||||||||||||||||| ||| ||
seq2  TTCACTAGAGGATTTTCCCAGTCAGTCAACAAACACTCTACCATACATTT  950

seq1  GCAT-GCATACTGAGGCAG-AGCC-ACATTTATCAAGGAATCCAG-TTGG  988
      |||| |||||||||||||| |||| ||||||||||| |||||||| ||||
seq2  GCATGGCATACTGAGGCAGTAGCCAACATTTATCAAAGAATCCAGTTTGG  1000

seq1  GACAATGTC-CTAA--CCAGATAGAATTTAA  1016
      ||||||||| || |  |||||||| ||||||
seq2  GACAATGTCTCTTATCCCAGATAGTATTTAA  1031

seq1: chr10_86620031_86621278
seq2: B6Ng01-335A07.g_68_1316 (reverse)

seq1  CAGG-ATAGAAAGGCTCTCTATAAGTG-ACGTAGGGAAACGA-TGCAGAC  47
      |||| |||| ||||||||||||||||| |||||||  ||||| |||||||
seq2  CAGGTATAG-AAGGCTCTCTATAAGTGAACGTAGG--AACGAGTGCAGAC  47

seq1  TTTATTT--AGTTGGCTCAGGATTTCTTATCCTTGCCTAA-TTAACTATG  94
       ||||||  ||| |||||| |  ||| ||| || || ||| |||||||||
seq2  CTTATTTTAAGTGGGCTCAAGGATTCCTATACTGGCTTAATTTAACTATG  97

seq1  AGGATTTAAGATTT-ATTCTAAAATGTTTTTTACAAACACTGTCAAGACC  143
      | |||||||||||| ||||| |||||||||||  ||||||||||||||||
seq2  AAGATTTAAGATTTAATTCT-AAATGTTTTTTGAAAACACTGTCAAGACC  146

seq1  TGTAAGTA-ATTTGTGGGTCCTGGA-GCAAAATGAAAATGT-CACTTCTT  190
      ||| |||| |||||||||||||||| ||||||||||||||| ||||||||
seq2  TGTTAGTATATTTGTGGGTCCTGGAGGCAAAATGAAAATGTCCACTTCTT  196

seq1  AATGGTAATAAAACTTAAACATTTTAGCTTTAAAATACCTCATTAAATGA  240
      ||||||| ||||   |||||||||||||||||||||| ||||||||||||
seq2  AATGGTATTAAA--CTAAACATTTTAGCTTTAAAATA-CTCATTAAATGA  243

seq1  ATATCAATATTATTATATAAGACATTAAATAAAATATCTTATATAAATGC  290
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATATTATTATATAAGACATTAAATAAAATATCTTATATAAATGC  293

seq1  ACCACAAATAATACCAATATAGGAGTATAAATCAGAACTTACAAAATTAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAATAATACCAATATAGGAGTATAAATCAGAACTTACAAAATTAA  343

seq1  AAAATGATATTTTTGTATCAAATTTGCACAATATAGTGAATAATGCTTCA  390
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGATA-TTTTGTATCAAATTTGCACAATATAGTGAATAATGCTTCA  392

seq1  TTAATGTTATCTCTTAATTGATCATAAATTTTTTTTGGCTTATTTTCTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTTATCTCTTAATTGATCATAAATTTTTTTTGGCTTATTTTCTAT  442

seq1  AAATATAAGGACATTTTAAAAAGCCTTTGCTTTTAGCAATTTCATTTTCA  490
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGGACA-TTTAAAAAGCCTTTGCTTTTAGCAATTTCATTTTCA  491

seq1  ACATTGTAAATAATTTCAGATAATTTTTTAATTTCAGAAGAACTTTTCTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAAATAATTTCAGATAATTTTTTAATTTCAGAAGAACTTTTCTT  541

seq1  ATGTTATTATATATGAAATTACACTGCTACTGACATTGTTTAGTGTATTT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTATATATGAAATTACACTGCTACTGACATTGTTTAGTGTATTT  591

seq1  TACAGTTTCTGACACCATTGGGCTAGATTTCTGAGAAATTATTTTGGAAT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTTCTGACACCATTGGGCTAGATTTCTGAGAAATTATTTTGGAAT  641

seq1  ATAAATTTTTATATATCTAGAGTTGATTATTCCTACAGAATGTTTTGCAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTTATATATCTAGAGTTGATTATTCCTACAGAATGTTTTGCAG  691

seq1  TTTTAAATTTACTTATTTTTAAAAAATCTTTATGTATGGCTGTGCCCTGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTACTTATTTTTAAAAAATCTTTATGTATGGCTGTGCCCTGC  741

seq1  ATGCATATCTGGTTCCCTTGAAGATCATAAGAGGCCATATGACCTTTTGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATCTGGTTCCCTTGAAGATCATAAGAGGCCATATGACCTTTTGA  791

seq1  AACCAGAGTTACAGAGGACTGTGACCTGCTACATAGGGGCTGGGAATGGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGTTACAGAGGACTGTGACCTGCTACATAGGGGCTGGGAATGGA  841

seq1  CTTCCAACCCCCTGGAAGAAGATCCAGCACTTTTAACCATTGAACAATCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAACCCCCTGGAAGAAGATCCAGCACTTTTAACCATTGAACAATCT  891

seq1  GCCAATTTCTCTATCCTACAGAATAGTTTTATAAGAAGTGTCTTTAGCTA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTCTCTATCCTACAGAATAGTTTTATAAGAAGTGTCTTTAGCTA  941

seq1  TAAATCCATTTTACACGAATCTGGATTTCCTGCTCAACAAGGGCCGTGGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCATTTTACACGAATCTGGATTTCCTGCTCAACAAGGGCCGTGGT  991

seq1  GTTTCCTTGTTTTCTCCAAAATTTCCTGTAACTTCTGAATGTTATAAGTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTTGTTTTCTCCAAAATTTCCTGTAACTTCTGAATGTTATAAGTA  1041

seq1  GTCAAGAGTGCCTGCAGTAGGCATACCTAAGAGTTCTAGCTTTTTATTCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGAGTGCCTGCAGTAGGCATACCTAAGAGTTCTAGCTTTTTATTCT  1091

seq1  ATGGCTTACTATGTCTATCCATGACAATGACGACGACAACAGCAACGACA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTACTATGTCTATCCATGACAATGACGACGACAACAGCAACGACA  1141

seq1  ACAACATATCTCTTGATCATAGCATAAGGGTTAGTAGCAAGTGATGTCTC  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATATCTCTTGATCATAGCATAAGGGTTAGTAGCAAGTGATGTCTC  1191

seq1  TTTAATTTGGGGGAGAGGTGGGTTACCTAGAAATTTCCCCCCAAGGCAAA  1240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTGGGGGAGAGGTGGGTTACCTAGAAATTTCCCCCCAAGGCAAA  1241

seq1  GTGAATTC  1248
      ||||||||
seq2  GTGAATTC  1249