BAC Information

Click to search

BAC

Clone NameB6Ng01-335H06
Chromosome10 (Build37)
Map Location 100,453,007 - 100,587,201
singlet/doubletdoublet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335H06.bB6Ng01-335H06.g
ACCGA120677GA120678
length1,1261,084
definitionB6Ng01-335H06.b B6Ng01-335H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,586,083 - 100,587,201)(100,453,007 - 100,454,095)
sequence
gaattcttaatgctttttcacacaacatatcctcaacacctcttatactg
agcaaagaaaatttactaatttatcctgagagtcacaattactaaaatga
aataaaaatgacaatgaacacaagaacagaaattattcaacaatcataag
atactataatgcatggcttaataaaagtaaataaaagtgaagaaaatatc
taataaaaaaaaaacgtgcctccagattctcacagatcaaaattgaaaac
ttcacttggcaaggccagtgcaatgaagggaaaaaaaaaactaaattatt
aagtgccttttaggccagcttatggattttgtttcagttcaaataaccca
ggaagcagatgtcaagatataattagaataccaagagatttatcggggaa
actgcctctaaaatattacagcaggaaggaaagccttcagaccatgattg
tgggtctgacacacaggtgaaggaaaggtggactggggagaaagaatgag
agacagtggagcagctgaaggagactcagcttacattgcctattggagga
atctgctgtttgatataaatggttcaccatttccctatagtcaggggtct
caagcaggagtcagaattatgctctgcattagcttccatcttccccattc
tttgatctgctaccattattatcaattctatgtatctcaagtggtatgtc
aggatgataaaatccagcatgaccagttaattttctaaaattaagaaatt
tgggggggagggagctagaaagatgacttggtcttctagagcacctatgg
ctcttgtagaggacatgggttcaatttccacaacccaaatgatggcttag
aaccagcaggttccaagggatcccactcccctctcataaagtctttagac
accaggcatgtgtggagtgtgtattcatacatgcatgtgaaacacttata
cacttatatgagtctttttttaaaaaaaaaaaaaaaacaacttttgttga
ttcaattttaccataaattatccagatctgaatatctttagcttttctgc
tgttttcctctgggtgatagaaacctgtttaaaggtctggagcatgcagt
taacctaccctcctgattccgctcct
gaattcactatcatcctgatatatatagcaagttctaggccagtaggaat
ttagaggacctcagaaacacaccacaccacacagacacaaacaaagacac
acacacacacacaaacacacacacacacaaacacacacacacacagagaa
acatagaaatatacacaccacaaacatgctcacacatacacagacacaca
ccacaataatgctcacacatacaacacacacagacagcacacacactcac
acacacaccatacacaaaagaatgtgcataagcacccattcaaatacact
cacacagaaacacatacatacaacacacatataaatacacacacacacac
atacccataaaacaaagagaaacaagcatacacatgtgcacaccccacca
catacatgtcacacaaactataccaacatgtacatgggtgctggtgatat
actgatggaattaatataataactgagtcttttaatcacttagacattgt
ttcaaaggccaagttatactctgattctagcactcagggggcagacacag
gtggatctctgagttcaaggctagcctgttctgtagagtgagtttcagga
cagcaaaacatacactcacacacacacacacacacacacacaaagtcaca
ctaaagcaaataacagcaaaaagaagaaggaggaggaggaagaagaaaag
acattttgaaataagcattattttatgtgggaattgtttgccaaacaaag
gaagctgttcaatgaaaaaaatgagaagttcctaagatgccttcacttat
cttttattttgctttgctccttccgtcaatcacttatttggattcacttc
ttcctttacctctcccccatttgtggtcttgcagcccaaaaaacctagtc
atttgtgtatacaggaccattatcgttcacacgaggaaagctggttagtt
actaaactactccttcgaaggaaaaaataaatgaatgaaggaaaagtaaa
gagacaccaagtgtaatttcctgagctgtgccaatctattgagtattgac
ttccggctcagaatatcatatgcaagaagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100586083_100587201
seq2: B6Ng01-335H06.b_45_1170 (reverse)

seq1  AGGAGCG--ATCAGGA-GGTAG--TTACTGCATGCT-CAGA-CTTTAACC  43
      |||||||  ||||||| |||||  | |||||||||| |||| |||||| |
seq2  AGGAGCGGAATCAGGAGGGTAGGTTAACTGCATGCTCCAGACCTTTAAAC  50

seq1  A-GTTTCTATCA-CCAGA-GAAAACAGGCAGAAAAGCTAAAGATA-TCAG  89
      | |||||||||| ||||| ||||||| |||||||||||||||||| ||||
seq2  AGGTTTCTATCACCCAGAGGAAAACA-GCAGAAAAGCTAAAGATATTCAG  99

seq1  ATTCTTGGATTAAATTTATGGTAAAATTGAATCAACAAAAGTTGTTTTTT  139
      ||   |||||  ||||||||||||||||||||||||||||||||||||||
seq2  AT--CTGGAT--AATTTATGGTAAAATTGAATCAACAAAAGTTGTTTTTT  145

seq1  TTTTTTTTTAATAAAAAGACTCATATAAGTGTATAAGTGTTTCACATGCA  189
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAAAAAAGACTCATATAAGTGTATAAGTGTTTCACATGCA  195

seq1  TGTATGAATACACACTCCACACATGCCTGGTGTCTAAAGACTTTATGAGA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAATACACACTCCACACATGCCTGGTGTCTAAAGACTTTATGAGA  245

seq1  GGGGAGTGGGATCCCTTGGAACCTGCTGGTTCTAAGCCATCATTTGGGTT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGGGATCCCTTGGAACCTGCTGGTTCTAAGCCATCATTTGGGTT  295

seq1  GTGGAAATTGAACCCATGTCCTCTACAAGAGCCATAGGTGCTCTAGAAGA  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAATTGAACCCATGTCCTCTACAAGAGCCATAGGTGCTCTAGAAGA  345

seq1  CCAAGTCATCTTTCTAGCTCCCT-CCCCCCAAATTTCTTAATTTTAGAAA  388
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCAAGTCATCTTTCTAGCTCCCTCCCCCCCAAATTTCTTAATTTTAGAAA  395

seq1  ATTAACTGGTCATGCTGGATTTTATCATCCTGACATACCACTTGAGATAC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGGTCATGCTGGATTTTATCATCCTGACATACCACTTGAGATAC  445

seq1  ATAGAATTGATAATAATGGTAGCAGATCAAAGAATGGGGAAGATGGAAGC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTGATAATAATGGTAGCAGATCAAAGAATGGGGAAGATGGAAGC  495

seq1  TAATGCAGAGCATAATTCTGACTCCTGCTTGAGACCCCTGACTATAGGGA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGAGCATAATTCTGACTCCTGCTTGAGACCCCTGACTATAGGGA  545

seq1  AATGGTGAACCATTTATATCAAACAGCAGATTCCTCCAATAGGCAATGTA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAACCATTTATATCAAACAGCAGATTCCTCCAATAGGCAATGTA  595

seq1  AGCTGAGTCTCCTTCAGCTGCTCCACTGTCTCTCATTCTTTCTCCCCAGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTCTCCTTCAGCTGCTCCACTGTCTCTCATTCTTTCTCCCCAGT  645

seq1  CCACCTTTCCTTCACCTGTGTGTCAGACCCACAATCATGGTCTGAAGGCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCCTTCACCTGTGTGTCAGACCCACAATCATGGTCTGAAGGCT  695

seq1  TTCCTTCCTGCTGTAATATTTTAGAGGCAGTTTCCCCGATAAATCTCTTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTGCTGTAATATTTTAGAGGCAGTTTCCCCGATAAATCTCTTG  745

seq1  GTATTCTAATTATATCTTGACATCTGCTTCCTGGGTTATTTGAACTGAAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTAATTATATCTTGACATCTGCTTCCTGGGTTATTTGAACTGAAA  795

seq1  CAAAATCCATAAGCTGGCCTAAAAGGCACTTAATAATTTAGTTTTTTTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCATAAGCTGGCCTAAAAGGCACTTAATAATTTAGTTTTTTTTT  845

seq1  TCCCTTCATTGCACTGGCCTTGCCAAGTGAAGTTTTCAATTTTGATCTGT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCATTGCACTGGCCTTGCCAAGTGAAGTTTTCAATTTTGATCTGT  895

seq1  GAGAATCTGGAGGCACGTTTTTTTTTTATTAGATATTTTCTTCACTTTTA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTGGAGGCACGTTTTTTTTTTATTAGATATTTTCTTCACTTTTA  945

seq1  TTTACTTTTATTAAGCCATGCATTATAGTATCTTATGATTGTTGAATAAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTATTAAGCCATGCATTATAGTATCTTATGATTGTTGAATAAT  995

seq1  TTCTGTTCTTGTGTTCATTGTCATTTTTATTTCATTTTAGTAATTGTGAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCTTGTGTTCATTGTCATTTTTATTTCATTTTAGTAATTGTGAC  1045

seq1  TCTCAGGATAAATTAGTAAATTTTCTTTGCTCAGTATAAGAGGTGTTGAG  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGATAAATTAGTAAATTTTCTTTGCTCAGTATAAGAGGTGTTGAG  1095

seq1  GATATGTTGTGTGAAAAAGCATTAAGAATTC  1119
      |||||||||||||||||||||||||||||||
seq2  GATATGTTGTGTGAAAAAGCATTAAGAATTC  1126

seq1: chr10_100453007_100454095
seq2: B6Ng01-335H06.g_68_1151

seq1  GAATTCACTATCATCCTGATATATATAGCAAGTTCTAGGCCAGTAGGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCATCCTGATATATATAGCAAGTTCTAGGCCAGTAGGAAT  50

seq1  TTAGAGGACCTCAGAAACACACCACACCACACAGACACAAACAAAGACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGACCTCAGAAACACACCACACCACACAGACACAAACAAAGACAC  100

seq1  ACACACACACACAAACACACACACACACAAACACACACACACACAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAAACACACACACACACAAACACACACACACACAGAGAA  150

seq1  ACATAGAAATATACACACCACAAACATGCTCACACATACACAGACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAATATACACACCACAAACATGCTCACACATACACAGACACACA  200

seq1  CCACAATAATGCTCACACATACAACACACACAGACAGCACACACACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATAATGCTCACACATACAACACACACAGACAGCACACACACTCAC  250

seq1  ACACACACCATACACAAAAGAATGTGCATAAGCACCCATTCAAATACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCATACACAAAAGAATGTGCATAAGCACCCATTCAAATACACT  300

seq1  CACACAGAAACACATACATACAACACACATATAAATACACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAAACACATACATACAACACACATATAAATACACACACACACAC  350

seq1  ATACCCATAAAACAAAGAGAAACAAGCATACACATGTGCACACCCCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCATAAAACAAAGAGAAACAAGCATACACATGTGCACACCCCACCA  400

seq1  CATACATGTCACACAAACTATACCAACATGTACATGGGTGCTGGTGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTCACACAAACTATACCAACATGTACATGGGTGCTGGTGATAT  450

seq1  ACTGATGGAATTAATATAATAACTGAGTCTTTTAATCACTTAGACATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGAATTAATATAATAACTGAGTCTTTTAATCACTTAGACATTGT  500

seq1  TTCAAAGGCCAAGTTATACTCTGATTCTAGCACTCAGGGGGCAGACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGCCAAGTTATACTCTGATTCTAGCACTCAGGGGGCAGACACAG  550

seq1  GTGGATCTCTGAGTTCAAGGCTAGCCTGTTCTGTAGAGTGAGTTTCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCTCTGAGTTCAAGGCTAGCCTGTTCTGTAGAGTGAGTTTCAGGA  600

seq1  CAGCAAAACATACACTCACACACACACACACACACACACACAAAGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAACATACACTCACACACACACACACACACACACACAAAGTCACA  650

seq1  CTAAAGCAAATAACAGCAAAAAGAAGAAGGAGGAGGAGGAAGAAGAAAAG  700
      ||||||||                 |||||||||||||||||||||||||
seq2  CTAAAGCANNNNNNNNNNNNNNNNNGAAGGAGGAGGAGGAAGAAGAAAAG  700

seq1  ACATTTTGAAATAAGCATTATTTTATGTGGGAATTGTTTGCCAAACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTGAAATAAGCATTATTTTATGTGGGAATTGTTTGCCAAACAAAG  750

seq1  GAAGCTGTTCAATGAAAAAAATGAGAAGTTCCTAAGATGCCTTCACTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGTTCAATGAAAAAAATGAGAAGTTCCTAAGATGCCTTCACTTAT  800

seq1  CTTTTATTTTGCTTTGCTCCTTCCGTCAATCACTTATTTGGATTCACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTGCTTTGCTCCTTCCGTCAATCACTTATTTGGATTCACTTC  850

seq1  TTCCTTTACCTCTCCCCCATTTGTGGTCTTGCAGCCCAAAAAACCTAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTACCTCTCCCCCATTTGTGGTCTTGCAGCCCAAAAAACCTAGTC  900

seq1  ATTTGTGTATACAGGACCATTATCGTTCACACGAGGAAAGCTGGTTAGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTATACAGGACCATTATCGTTCACACGAGGAAAGCTGGTTAGTT  950

seq1  ACTAAACTACTCCTTCGAAGGAAAAAAATAAATGAATGAAGGAAAAGTAA  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTAAACTACTCCTTCGAAGG-AAAAAATAAATGAATGAAGGAAAAGTAA  999

seq1  AGAGACACCAAGTGTAATTTCCTGAGCTGTGCCAATCTATTGAGTATTTG  1050
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAGACACCAAGTGTAATTTCCTGAGCTGTGCCAATCTATTGAGTA-TTG  1048

seq1  ACTTCGGGCTCCAGGAATATCATAATGCAAGAAGAAAAA  1089
      ||||| |||||   ||||||||| |||||||||||||||
seq2  ACTTCCGGCTC--AGAATATCAT-ATGCAAGAAGAAAAA  1084