BAC Information

Click to search

BAC

Clone NameB6Ng01-335L05
Chromosome10 (Build37)
Map Location 104,264,502 - 104,394,991
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068, Ccdc59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335L05.bB6Ng01-335L05.g
ACCGA120843GA120844
length9781,026
definitionB6Ng01-335L05.b B6Ng01-335L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,264,502 - 104,265,477)(104,394,446 - 104,394,991)
sequence
gaattcagcaaagtacagagccacatgtgtataaggaaatgacccaaatc
caggaaggagctacccacaaggattagaggaaacattactcagagcacac
aggaacaggaatagacaggttcctcagccagaatggaaaacttctaattc
ataggacagtgggtagagtccttggaaagatcttgttctcttagcagggg
gaaaaaaaaaggattagtgacaaaatgaccacggttcaagttctacctca
taaatctcaggagcaggatctaaatctcaaacaaattttcagttaactca
atcaagctcgagaacaaaacccaagaagagtttaggaacataaaacagga
gcacatgaaaaaaaaaggttgctgtaatatatcatttctgtgctggaaca
atgatatgaagactatgcaaacatctccttaataaaagcacattatttta
aacatagttcaaagagagattgagtttccattcccaagaagatggtgaaa
tactttttcccattctttttgctaaagagaacaagaacaacccacactgc
aaacacaatccatacaagaagaggttagaagtagaaggggaaggcagact
ggctagggaattaatgactgaagaaattatatggtgatgttgagttcagg
ggtttccttttgtcctgcatataacataaatgctttggagctgcaaatgc
tagcaaccttcagaaagagcatgtatgccagagactatttctatgaaaaa
tacaataggatttatactgctggaaaatttataatatgaactaccgaact
tatcttctcacttaaacttaaatttaaatataggccgaatttgttcattt
gtaatccctgctccagggcagcagagataggcagatccctggggaattct
ttggctggccaccctacctactcagtgacttccaggcagaaaatctggag
tgtgcctgttggggtgggaatggagggg
gaattccagaggaaatctcattccctcttttcttttataatactcaatat
tgaatgtggaggttactttggatagtatggacattttcacaacattactt
ctaccaattcaggattatgagagggctttcttctgttcctttttaggctc
ttaaatatttcaatgtacaagtcttcccctttcttagacttaattcaata
tattttgtttttctttctgaagtgactcagtggaaatgatcatcaaggtt
tcaattcaattctccacagaaatctaaaaaggaatctcaaaattcatacc
aaaatcacaaaatacccagaagcacaaaaatattgaacagtaaagacatt
tcaggagctatatccatccctgatttcaagtatgtcacagaggagacttg
gcgatataaacagcaagtggtggtgggaaagaaacatgttgatcaaaaga
atgccaatgagaaccctagagtcacctgaatttttcaacgagaccaaaag
cagacattggacagaggaaaataccttgaacaaatcgtatttgcaaggac
aaactggagagatttatgtagaaaaactgaaactagaacgttctctctaa
tttatacaaaactcaactagatacacatcaaggaatttaaaattagactt
gtgacctgaatctgattgatagaggacaatgtagaaagtatgtttgaatt
tatagacacagaagtggactttctgaatagaatgcaataggcattagact
gacagtttacaaataggttgctatgaaattatgatgtgtttgaacagcaa
aaataccaacattttagcgaaaagtctgcctgcagaatggcaaatatttc
tacatcaactatgtatctgactggtaacaggagagaaactggtgaaatgg
ctgccctatgattaggagtaaagattttattgtgtgtaagagaaaacaaa
cacccagaggcatttggaaggagtccagtacagggaagaaaaggagcaga
ctacatgggcagcattatatgcaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104264502_104265477
seq2: B6Ng01-335L05.b_45_1022

seq1  GAATTCAGCAAAGTACAGAGCCACATGTGTATAAGGAAATGACCCAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAAAGTACAGAGCCACATGTGTATAAGGAAATGACCCAAATC  50

seq1  CAGGAAGGAGCTACCCACAAGGATTAGAGGAAACATTACTCAGAGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGAGCTACCCACAAGGATTAGAGGAAACATTACTCAGAGCACAC  100

seq1  AGGAACAGGAATAGACAGGTTCCTCAGCCAGAATGGAAAACTTCTAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGGAATAGACAGGTTCCTCAGCCAGAATGGAAAACTTCTAATTC  150

seq1  ATAGGACAGTGGGTAGAGTCCTTGGAAAGATCTTGTTCTCTTAGCAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGACAGTGGGTAGAGTCCTTGGAAAGATCTTGTTCTCTTAGCAGGGG  200

seq1  GAAAAAAAAAGGATTAGTGACAAAATGACCACGGTTCAAGTTCTACCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAGGATTAGTGACAAAATGACCACGGTTCAAGTTCTACCTCA  250

seq1  TAAATCTCAGGAGCAGGATCTAAATCTCAAACAAATTTTCAGTTAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTCAGGAGCAGGATCTAAATCTCAAACAAATTTTCAGTTAACTCA  300

seq1  ATCAAGCTCGAGAACAAAACCCAAGAAGAGTTTAGGAACATAAAACAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTCGAGAACAAAACCCAAGAAGAGTTTAGGAACATAAAACAGGA  350

seq1  GCACATGAAAAAAAAAGGTTGCTGTAATATATCATTTCTGTGCTGGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAAAAAAAAAGGTTGCTGTAATATATCATTTCTGTGCTGGAACA  400

seq1  ATGATATGAAGACTATGCAAACATCTCCTTAATAAAAGCACATTATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATGAAGACTATGCAAACATCTCCTTAATAAAAGCACATTATTTTA  450

seq1  AACATAGTTCAAAGAGAGATTGAGTTTCCATTCCCAAGAAGATGGTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTTCAAAGAGAGATTGAGTTTCCATTCCCAAGAAGATGGTGAAA  500

seq1  TACTTTTTCCCATTCTTTTTGCTAAAGAGAACAAGAACAACCCACACTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCCCATTCTTTTTGCTAAAGAGAACAAGAACAACCCACACTGC  550

seq1  AAACACAATCCATACAAGAAGAGGTTAGAAGTAGAAGGGGAAGGCAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAATCCATACAAGAAGAGGTTAGAAGTAGAAGGGGAAGGCAGACT  600

seq1  GGCTAGGGAATTAATGACTGAAGAAATTATATGGTGATGTTGAGTTCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGGAATTAATGACTGAAGAAATTATATGGTGATGTTGAGTTCAGG  650

seq1  GGTTTCCTTTTGTCCTGCATATAACATAAATGCTTTGGAGCTGCAAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTTTTGTCCTGCATATAACATAAATGCTTTGGAGCTGCAAATGC  700

seq1  TAGCAACCTTCAGAAAGAGCATGTATGCCAGAGACTATTTCTATGAAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACCTTCAGAAAGAGCATGTATGCCAGAGACTATTTCTATGAAAAA  750

seq1  TACAATAGGATTTATACTGCTGGAAAATTTATAATATGAACTACCGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAGGATTTATACTGCTGGAAAATTTATAATATGAACTACCGAACT  800

seq1  TATCTTCTCACTTAAACTTAAATTTAAATATAGGCCGAATTTGTTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTCACTTAAACTTAAATTTAAATATAGGCCGAATTTGTTCATTT  850

seq1  GTAATCCCTGCTCCAGGGCAGCAGAGATAGGCAGATCCCTGGGGAATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCCTGCTCCAGGGCAGCAGAGATAGGCAGATCCCTGGGGAATTCT  900

seq1  TTGGCTGGCCACCCTACCTACTCAGTGACTTCCAGGCAGAAAATCTGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGCCACCCTACCTACTCAGTGACTTCCAGGCAGAAAATCTGGAG  950

seq1  TGTGCCTGTTGGGGTGGGA--TGAGGGG  976
      |||||||||||||||||||   ||||||
seq2  TGTGCCTGTTGGGGTGGGAATGGAGGGG  978

seq1: chr10_104394446_104394991
seq2: B6Ng01-335L05.g_67_612 (reverse)

seq1  TTGCAAATACGATTTGTTCAAGGTATTTTCCTCTGTCCAATGTCTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATACGATTTGTTCAAGGTATTTTCCTCTGTCCAATGTCTGCTTT  50

seq1  TGGTCTCGTTGAAAAATTCAGGTGACTCTAGGGTTCTCATTGGCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCGTTGAAAAATTCAGGTGACTCTAGGGTTCTCATTGGCATTCTT  100

seq1  TTGATCAACATGTTTCTTTCCCACCACCACTTGCTGTTTATATCGCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAACATGTTTCTTTCCCACCACCACTTGCTGTTTATATCGCCAAG  150

seq1  TCTCCTCTGTGACATACTTGAAATCAGGGATGGATATAGCTCCTGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTGTGACATACTTGAAATCAGGGATGGATATAGCTCCTGAAATG  200

seq1  TCTTTACTGTTCAATATTTTTGTGCTTCTGGGTATTTTGTGATTTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGTTCAATATTTTTGTGCTTCTGGGTATTTTGTGATTTTGGTA  250

seq1  TGAATTTTGAGATTCCTTTTTAGATTTCTGTGGAGAATTGAATTGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGAGATTCCTTTTTAGATTTCTGTGGAGAATTGAATTGAAACC  300

seq1  TTGATGATCATTTCCACTGAGTCACTTCAGAAAGAAAAACAAAATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATCATTTCCACTGAGTCACTTCAGAAAGAAAAACAAAATATATT  350

seq1  GAATTAAGTCTAAGAAAGGGGAAGACTTGTACATTGAAATATTTAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGTCTAAGAAAGGGGAAGACTTGTACATTGAAATATTTAAGAGC  400

seq1  CTAAAAAGGAACAGAAGAAAGCCCTCTCATAATCCTGAATTGGTAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGGAACAGAAGAAAGCCCTCTCATAATCCTGAATTGGTAGAAGT  450

seq1  AATGTTGTGAAAATGTCCATACTATCCAAAGTAACCTCCACATTCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTGAAAATGTCCATACTATCCAAAGTAACCTCCACATTCAATAT  500

seq1  TGAGTATTATAAAAGAAAAGAGGGAATGAGATTTCCTCTGGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTATAAAAGAAAAGAGGGAATGAGATTTCCTCTGGAATTC  546