BAC Information

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BAC

Clone NameB6Ng01-335O01
Chromosome10 (Build37)
Map Location 92,405,867 - 92,466,622
singlet/doubletdoublet
Overlap gene4930485B16Rik
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872
Downstream geneEG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335O01.bB6Ng01-335O01.g
ACCGA120968GA120969
length1,1511,099
definitionB6Ng01-335O01.b B6Ng01-335O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,465,486 - 92,466,622)(92,405,867 - 92,406,973)
sequence
gaattctgggagctgtaagagggtcgttatcaaaaaggaagtatctgaca
cagtccattattcttttagtatgcgtctcctcattttaaccagctgccct
tgagaaatctgttctgtccagtgccgttagttattggtacacatgcagac
atggtgcttcctgttaaaaagtctgtggtgcttcatgagttcataaacct
tattattattgctgttgttgttgtaattggcacatcttgttttgcagtat
tcactaggtcacccattattctataaggctaacacctcatctcttaggca
acctgggcatcttttttttttttttttgtaattgtttttttttttctttt
cttttttcttttttattacatattttcctcaattacatttccaatgctat
cccaaaagtcccccataccctgcccccccaactcccctacctgcccattc
ccatttttttttggccctggcgttcccctgtactggggtatataaagttt
gcgtgtccaatgggcctctctttccagtgatggccgactaggccatcttt
tgatacatatgcagctagagtcaagagctccggggtactggttagttcat
attgttgttccacctatagggttgcagatccctttagctccttgggtact
ttctctagctcctccattgggagccctgtgatccatccactagctgagca
acctgggcttctaataacatgattttaagaggaaggaagcctcagttgta
ggtttaccctcccccccccccaaccccacacacaccatcttactttcctc
agaccatctcagaatccctcggacctcacaggactccagccgtgtattaa
cttttccttacgttcattgcctgttttttttgggttttattccccctctc
cccaattctgactcatcaccctggccttactcagtgttctctgaccatct
cccattatcttcgttcttctcaagtctcctctcaactgtacccacccaag
gactgtatccttgccctgtcacatggatgggggagggcattcccaaggct
gacaagctctctttgctccctcagagtcaagcacatagtctcctccagga
aggcttcactggcttggggaggtggatacatttgaccagaactagggaag
t
gaattcaaaagcttcaatctgtagcaggcatttgacacgtagatgaattt
ttttcttagcatatttcaaagttttaaatttttttattcttatgaaatgc
aaataacgttatatcttgccaattttccttatgaagcctcccactttttc
ataaaaaatgaaataatctactctttttcaacagcctcttcaaagcccag
gtgccttgggaaacagacgaaaggagttaaaaaaaaatcctggagactgg
cagctgatctcagaagggaagaaaaaggcagctgaggccatgtgtgggtc
tggagttaatcaggtgctctggcatgagacaggaaggggagcccgtggga
gagatgctccttggtctctgggcagtgagagtggttcaggaattggactg
ggcttcagatgggctgcacacagatgagagctattggagagtggacttac
atacaggattccaaattgaatacctaaggacttccttcttcagtaagtcg
aacaagtaaaacacccattaaaagtgttaagattttggtaatgtagacac
ttcctagttaacagaacactaagaggttaaaggatgggggctcatcctta
aaaaccacatctcctagctgactggataaggctttccaacacaggagagt
taacgtcacatttgcaaagagaatctgattaaatgataaactgaaagtaa
agaagacagaaataaacagaggcaggagaaaggtacactgattcttctcc
agccctaaggctaataaattactatgattggttgaatccttaaaacaacc
acaagaaatattggccattattacccttattttacaataaggaatggagg
ggtctggcagatcagcatcatactctggaattcaagagtggtcctgagac
agaaatattatgagccagtataagacaacagacagtgcgatggtgggagt
taaagacacagtgagtagactctgctatcccgttgaacaaaggtccaccc
cagtgctgaagcctcattaaagtgttcgctttattttctgcattgcagat
caaggaactgcttcctagaacggaactccacacatacgaatggtatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92465486_92466622
seq2: B6Ng01-335O01.b_44_1194 (reverse)

seq1  ACTTCCCTAG-TCT-GTCAAATGATTCCAACTCACCAAG-CAGTG-AGCT  46
      |||||||||| ||| ||||||||  |||| ||| ||||| ||||| ||| 
seq2  ACTTCCCTAGTTCTGGTCAAATGTATCCACCTCCCCAAGCCAGTGAAGCC  50

seq1  TTCCTG--AGAGACTCTGTGCTGAACTCTGGAGGAGCAAAGAG---CTGT  91
      ||||||   |||||| ||||||  ||||||  |||||||||||    |||
seq2  TTCCTGGAGGAGACTATGTGCTTGACTCTGAGGGAGCAAAGAGAGCTTGT  100

seq1  CAGCC-TGGGAATGCCCT-CCCCATCCATGTGACA-GGCAAGGATACAGT  138
      ||||| |||||||||||| |||||||||||||||| ||||||||||||||
seq2  CAGCCTTGGGAATGCCCTCCCCCATCCATGTGACAGGGCAAGGATACAGT  150

seq1  CC-TGGGT-GGTACAGTTGAGA-GAGACTTTGAGAAGAACG-AGAT-ATG  183
      || ||||| ||||||||||||| ||||| |||||||||||| |||| |||
seq2  CCTTGGGTGGGTACAGTTGAGAGGAGAC-TTGAGAAGAACGAAGATAATG  199

seq1  GGAGATGGTCAGAGAACACTGAAGTAAGGCCAGGGTGATGAGTCAGAATT  233
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGAGATGGTCAGAGAACACTG-AGTAAGGCCAGGGTGATGAGTCAGAATT  248

seq1  GGGGGAGAGGGGGAATAAAAACCAAAAAAAACAGGCAATGAACGTAAGGA  283
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  -GGGGAGAGGGGGAATAAAACCCAAAAAAAACAGGCAATGAACGTAAGGA  297

seq1  AAAGTTAATACACGGCTGGAGTCCTGTGAGGTCCGAGGGATTCTGAGATG  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAATACACGGCTGGAGTCCTGTGAGGTCCGAGGGATTCTGAGATG  347

seq1  GTCTGAGGAAAGTAAGATGGTGTGTGTGGGGTTGGGGGGGGGGGAGGGTA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGGAAAGTAAGATGGTGTGTGTGGGGTTGGGGGGGGGGGAGGGTA  397

seq1  AACCTACAACTGAGGCTTCCTTCCTCTTAAAATCATGTTATTAGAAGCCC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACAACTGAGGCTTCCTTCCTCTTAAAATCATGTTATTAGAAGCCC  447

seq1  AGGTTGCTCAGCTAGTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTCAGCTAGTGGATGGATCACAGGGCTCCCAATGGAGGAGCTAG  497

seq1  AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAA  547

seq1  CAATATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGT  597

seq1  ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGAC  647

seq1  ACGCAAACTTTATATACCCCAGTACAGGGGAACGCCAGGGCCAAAAAAAA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAACTTTATATACCCCAGTACAGGGGAACGCCAGGGCCAAAAAAAA  697

seq1  ATGGGAATGGGCAGGTAGGGGAGTTGGGGGGGCAGGGTATGGGGGACTTT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAATGGGCAGGTAGGGGAGTTGGGGGGGCAGGGTATGGGGGACTTT  747

seq1  TGGGATAGCATTGGAAATGTAATTGAGGAAAATATGTAATAAAAAAGAAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGCATTGGAAATGTAATTGAGGAAAATATGTAATAAAAAAGAAA  797

seq1  AAAGAAAAGAAAAAAAAAAACAATTACAAAAAAAAAAAAAAAAGATGCCC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGAAAAAAAAAAACAATTACAAAAAAAAAAAAAAAAGATGCCC  847

seq1  AGGTTGCCTAAGAGATGAGGTGTTAGCCTTATAGAATAATGGGTGACCTA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCCTAAGAGATGAGGTGTTAGCCTTATAGAATAATGGGTGACCTA  897

seq1  GTGAATACTGCAAAACAAGATGTGCCAATTACAACAACAACAGCAATAAT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACTGCAAAACAAGATGTGCCAATTACAACAACAACAGCAATAAT  947

seq1  AATAAGGTTTATGAACTCATGAAGCACCACAGACTTTTTAACAGGAAGCA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGTTTATGAACTCATGAAGCACCACAGACTTTTTAACAGGAAGCA  997

seq1  CCATGTCTGCATGTGTACCAATAACTAACGGCACTGGACAGAACAGATTT  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTGCATGTGTACCAATAACTAACGGCACTGGACAGAACAGATTT  1047

seq1  CTCAAGGGCAGCTGGTTAAAATGAGGAGACGCATACTAAAAGAATAATGG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGCAGCTGGTTAAAATGAGGAGACGCATACTAAAAGAATAATGG  1097

seq1  ACTGTGTCAGATACTTCCTTTTTGATAACGACCCTCTTACAGCTCCCAGA  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCAGATACTTCCTTTTTGATAACGACCCTCTTACAGCTCCCAGA  1147

seq1  ATTC  1137
      ||||
seq2  ATTC  1151

seq1: chr10_92405867_92406973
seq2: B6Ng01-335O01.g_66_1164

seq1  GAATTCAAAAGCTTCAATCTGTAGCAGGCATTTGACACGTAGATGAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCTTCAATCTGTAGCAGGCATTTGACACGTAGATGAATTT  50

seq1  TTTTCTTAGCATATTTCAAAGTTTTAAATTTTTTTATTCTTATGAAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAGCATATTTCAAAGTTTTAAATTTTTTTATTCTTATGAAATGC  100

seq1  AAATAACGTTATATCTTGCCAATTTTCCTTATGAAGCCTCCCACTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACGTTATATCTTGCCAATTTTCCTTATGAAGCCTCCCACTTTTTC  150

seq1  ATAAAAAATGAAATAATCTACTCTTTTTCAACAGCCTCTTCAAAGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATGAAATAATCTACTCTTTTTCAACAGCCTCTTCAAAGCCCAG  200

seq1  GTGCCTTGGGAAACAGACGAAAGGAGTTAAAAAAAAATCCTGGAGACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTGGGAAACAGACGAAAGGAGTTAAAAAAAAATCCTGGAGACTGG  250

seq1  CAGCTGATCTCAGAAGGGAAGAAAAAGGCAGCTGAGGCCATGTGTGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATCTCAGAAGGGAAGAAAAAGGCAGCTGAGGCCATGTGTGGGTC  300

seq1  TGGAGTTAATCAGGTGCTCTGGCATGAGACAGGAAGGGGAGCCCGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTAATCAGGTGCTCTGGCATGAGACAGGAAGGGGAGCCCGTGGGA  350

seq1  GAGATGCTCCTTGGTCTCTGGGCAGTGAGAGTGGTTCAGGAATTGGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCTCCTTGGTCTCTGGGCAGTGAGAGTGGTTCAGGAATTGGACTG  400

seq1  GGCTTCAGATGGGCTGCACACAGATGAGAGCTATTGGAGAGTGGACTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGATGGGCTGCACACAGATGAGAGCTATTGGAGAGTGGACTTAC  450

seq1  ATACAGGATTCCAAATTGAATACCTAAGGACTTCCTTCTTCAGTAAGTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGATTCCAAATTGAATACCTAAGGACTTCCTTCTTCAGTAAGTCG  500

seq1  AACAAGTAAAACACCCATTAAAAGTGTTAAGATTTTGGTAATGTAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTAAAACACCCATTAAAAGTGTTAAGATTTTGGTAATGTAGACAC  550

seq1  TTCCTAGTTAACAGAACACTAAGAGGTTAAAGGATGGGGGCTCATCCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTTAACAGAACACTAAGAGGTTAAAGGATGGGGGCTCATCCTTA  600

seq1  AAAACCACATCTCCTAGCTGACTGGATAAGGCTTTCCAACACAGGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCACATCTCCTAGCTGACTGGATAAGGCTTTCCAACACAGGAGAGT  650

seq1  TAACGTCACATTTGCAAAGAGAATCTGATTAAATGATAAACTGAAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCACATTTGCAAAGAGAATCTGATTAAATGATAAACTGAAAGTAA  700

seq1  AGAAGACAGAAATAAACAGAGGCAGGAGAAAGGTACACTGATTCTTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGAAATAAACAGAGGCAGGAGAAAGGTACACTGATTCTTCTCC  750

seq1  AGCCCTAAGGCTAATAAATTACTATGATTGGTTGAATCCTTAAAACAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAAGGCTAATAAATTACTATGATTGGTTGAATCCTTAAAACAACC  800

seq1  ACAAGAAATATTGGCCATTATTACCCTTATTTTACAATAAGGAATGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAATATTGGCCATTATTACCCTTATTTTACAATAAGGAATGGAGG  850

seq1  GGTCTGGCAGATCAGCATCATACTCTGGAATTCAAGGAGGTGGTCCTGAG  900
      ||||||||||||||||||||||||||||||||||||   |||||||||| 
seq2  GGTCTGGCAGATCAGCATCATACTCTGGAATTCAAG--AGTGGTCCTGA-  897

seq1  GACAGAAATATTATGAGCCAGTATAAGGACAAACAGACAGTGCGATGGTG  950
      |||||||||||||||||||||||||| ||| |||||||||||||||||| 
seq2  GACAGAAATATTATGAGCCAGTATAA-GAC-AACAGACAGTGCGATGGT-  944

seq1  GGGAGTTAAAGACACAGTGAGTAGACTCTGCTATCCCGTTGAACAAAAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GGGAGTTAAAGACACAGTGAGTAGACTCTGCTATCCCGTTGAACAAA--G  992

seq1  GTCCACCCCAGTGCTGAAGCCTTCATTAAAGGTGTCGCCTTTATTTTCTG  1050
      ||||||||||||||||||||| |||||||| ||||   ||||||||||||
seq2  GTCCACCCCAGTGCTGAAGCC-TCATTAAA-GTGTTCGCTTTATTTTCTG  1040

seq1  CATTGCAGAATCAGGGACTTGCTTCTCAG-ACGG-ACT-CACACATACGA  1097
      |||||||| |||| |||  ||||||  || |||| ||| |||||||||||
seq2  CATTGCAG-ATCAAGGAACTGCTTCCTAGAACGGAACTCCACACATACGA  1089

seq1  TGGGTATCTT  1107
        ||||||||
seq2  ATGGTATCTT  1099