BAC Information

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BAC

Clone NameB6Ng01-336B01
Chromosome10 (Build37)
Map Location 64,651,260 - 64,836,022
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna3
Downstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336B01.bB6Ng01-336B01.g
ACCGA121107GA121108
length1,191285
definitionB6Ng01-336B01.b B6Ng01-336B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,651,260 - 64,652,457)(64,835,738 - 64,836,022)
sequence
gaattcaggacctctggaagctagtgctcttatcctctgggccatctatg
cagcccttttcaactctttctcattgttaccttaagttatcccattaaaa
ataaccttcaaatttaaaatgaacaagtatacagaaggattactataact
aaatgcttctctcccttggtctatgcatctacgccagctaagttctgcac
agtgcatgtattaccccgaggtacacagccttctagatattctgtcttga
tatacacttctatgaatccacaaacaagacagggaaaacgttgaaagatt
catcatttcttaaattttctctaaggagatagtaaataccatgtatcctt
cacattttattgtccaggagaagaagttttatgtccatgcctaagttaaa
caggtagactgggtgatatttttccacagagaaggtcaccaaacaatact
ttcagttgacttgatctgatttcagcagcatgtaacttcttgaccttgta
atcaatagttcttccatcccatgaggctaatcagaatgctgtgattcttc
ttattctcacattattattatttcttagggtaaatcagtggtcattgagc
tgaaaaagacattgtcattttccaaatatagagtcaaaggtgagattctg
attcatgaagactgaatgacccctgtaaagtctgttttcatttgtctgtt
tggcatgcatattgaattgttgtggaattttagtacaggtctgccaatgt
cccctcttagcatctaattaagtacatggctcaattatttacattaagga
gctgtcacattttggatcacattttgtgtccataaatcaacccaaggtca
cacattcagacaagtagaaacagacatatgatttagggtttggaaatttt
tcatataaactaatttacagggatttcaagacaacaagctaagtctgcct
acttgtcatacatcagctcctcctgtctctttgtataggattttgtgtag
tctatctggcacccctcttattggacacttaaggcaagagagctctgttc
aattgtcattctcagtgtgttgtgcattaaagcaatcctgtggacagctg
ttaaatgccttggaggtacagtctgaagacctggaagttgaatctcctcc
gaatccacataaatgttggtgcaaacatctccactgtgaaa

ttccttctccttttgatgttctttactgtcttgctcaaatgcaatgcaat
caagtcatcttagcctgactatgttttatattcttatttacaggatgttt
gcaattactttaaaaaatcagttaataatgaaaacagatttataatttac
tttttatttggttagagtcatctgccacttatatataaataattgtatat
aggaattatgtataaccaatgcatatttagatacagtcacaaactatgtg
tgtgtgtgtagttatgtgtggatgtgtggatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64651260_64652457
seq2: B6Ng01-336B01.b_46_1236

seq1  GAATTCAGGACCTCTGGAAGCTAGTGCTCTTATCCTCTGGGCCATCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTCTGGAAGCTAGTGCTCTTATCCTCTGGGCCATCTATG  50

seq1  CAGCCCTTTTCAACTCTTTCTCATTGTTACCTTAAGTTATCCCATTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTTTCAACTCTTTCTCATTGTTACCTTAAGTTATCCCATTAAAA  100

seq1  ATAACCTTCAAATTTAAAATGAACAAGTATACAGAAGGATTACTATAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTCAAATTTAAAATGAACAAGTATACAGAAGGATTACTATAACT  150

seq1  AAATGCTTCTCTCCCTTGGTCTATGCATCTACGCCAGCTAAGTTCTGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTTCTCTCCCTTGGTCTATGCATCTACGCCAGCTAAGTTCTGCAC  200

seq1  AGTGCATGTATTACCCCGAGGTACACAGCCTTCTAGATATTCTGTCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGTATTACCCCGAGGTACACAGCCTTCTAGATATTCTGTCTTGA  250

seq1  TATACACTTCTATGAATCCACAAACAAGACAGGGAAAACGTTGAAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACTTCTATGAATCCACAAACAAGACAGGGAAAACGTTGAAAGATT  300

seq1  CATCATTTCTTAAATTTTCTCTAAGGAGATAGTAAATACCATGTATCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTCTTAAATTTTCTCTAAGGAGATAGTAAATACCATGTATCCTT  350

seq1  CACATTTTATTGTCCAGGAGAAGAAGTTTTATGTCCATGCCTAAGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTATTGTCCAGGAGAAGAAGTTTTATGTCCATGCCTAAGTTAAA  400

seq1  CAGGTAGACTGGGTGATATTTTTCCACAGAGAAGGTCACCAAACAATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGACTGGGTGATATTTTTCCACAGAGAAGGTCACCAAACAATACT  450

seq1  TTCAGTTGACTTGATCTGATTTCAGCAGCATGTAACTTCTTGACCTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGACTTGATCTGATTTCAGCAGCATGTAACTTCTTGACCTTGTA  500

seq1  ATCAATAGTTCTTCCATCCCATGAGGCTAATCAGAATGCTGTGATTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAGTTCTTCCATCCCATGAGGCTAATCAGAATGCTGTGATTCTTC  550

seq1  TTATTCTCACATTATTATTATTTCTTAGGGTAAATCAGTGGTCATTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCACATTATTATTATTTCTTAGGGTAAATCAGTGGTCATTGAGC  600

seq1  TGAAAAAGACATTGTCATTTTCCAAATATAGAGTCAAAGGTGAGATTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAGACATTGTCATTTTCCAAATATAGAGTCAAAGGTGAGATTCTG  650

seq1  ATTCATGAAGACTGAATGACCCCTGTAAAGTCTGTTTTCATTTGTCTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAAGACTGAATGACCCCTGTAAAGTCTGTTTTCATTTGTCTGTT  700

seq1  TGGCATGCATATTGAATTGTTGTGGAATTTTAGTACAGGTCTGCCAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCATATTGAATTGTTGTGGAATTTTAGTACAGGTCTGCCAATGT  750

seq1  CCCCTCTTAGCATCTAATTAAGTACATGGCTCAATTATTTACATTAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTAGCATCTAATTAAGTACATGGCTCAATTATTTACATTAAGGA  800

seq1  GCTGTCACATTTTGGATCACATTTTGTGTCCATAAATCAACCCAAGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCACATTTTGGATCACATTTTGTGTCCATAAATCAACCCAAGGTCA  850

seq1  CACATTCAGACAAGTAGAAACAGACATATGATTTAGGGTTTGGAAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCAGACAAGTAGAAACAGACATATGATTTAGGGTTTGGAAATTTT  900

seq1  TCATATAAACTAATTTACAGGGATTTCAAGACAACAAGCTAAGTCTGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAAACTAATTTACAGGGATTTCAAGACAACAAGCTAAGTCTGCCT  950

seq1  ACTTGTCATACATCAGGCTCCTCCTGTCTCTTTGTATAGGATTTTGTGTA  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTTGTCATACATCA-GCTCCTCCTGTCTCTTTGTATAGGATTTTGTGTA  999

seq1  GTCCTATCTGGCACCCCCTCTTATTTGGACACTTAAGGCAAAGAGAGCTC  1050
      || |||||||||| ||||||||| ||||||||||||||| ||||||||||
seq2  GT-CTATCTGGCA-CCCCTCTTA-TTGGACACTTAAGGC-AAGAGAGCTC  1045

seq1  TGTTTCATTTGTCCATTCTCAGTGTGTTGTGCATTTAAGCAATCCTGTGG  1100
      || |||| |||| |||||||||||||||||||||| ||||||||||||||
seq2  TG-TTCAATTGT-CATTCTCAGTGTGTTGTGCATTAAAGCAATCCTGTGG  1093

seq1  ACAAGCTGTTAAAATGCTT-GAGGTACAGTTCTGAGGA-CTGAAGTTTGA  1148
      || ||||||||||   ||| ||||||||| ||||| || ||| |  ||||
seq2  AC-AGCTGTTAAATGCCTTGGAGGTACAG-TCTGAAGACCTGGAAGTTGA  1141

seq1  A--TCCTCAGAAACCCACATAAATGTTGGGTGCACAACATCCCCAC-CTG  1195
      |  ||||| | || ||||||||||||| |||||| |||||| ||||  ||
seq2  ATCTCCTCCG-AATCCACATAAATGTT-GGTGCA-AACATCTCCACTGTG  1188

seq1  AAA  1198
      |||
seq2  AAA  1191


seq1: chr10_64835738_64836022
seq2: B6Ng01-336B01.g_74_358 (reverse)

seq1  ACACATCCACACATCCACACATAACTACACACACACACATAGTTTGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCACACATCCACACATAACTACACACACACACATAGTTTGTGAC  50

seq1  TGTATCTAAATATGCATTGGTTATACATAATTCCTATATACAATTATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAAATATGCATTGGTTATACATAATTCCTATATACAATTATTTA  100

seq1  TATATAAGTGGCAGATGACTCTAACCAAATAAAAAGTAAATTATAAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAGTGGCAGATGACTCTAACCAAATAAAAAGTAAATTATAAATCT  150

seq1  GTTTTCATTATTAACTGATTTTTTAAAGTAATTGCAAACATCCTGTAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTATTAACTGATTTTTTAAAGTAATTGCAAACATCCTGTAAAT  200

seq1  AAGAATATAAAACATAGTCAGGCTAAGATGACTTGATTGCATTGCATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATAAAACATAGTCAGGCTAAGATGACTTGATTGCATTGCATTTG  250

seq1  AGCAAGACAGTAAAGAACATCAAAAGGAGAAGGAA  285
      |||||||||||||||||||||||||||||||||||
seq2  AGCAAGACAGTAAAGAACATCAAAAGGAGAAGGAA  285


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