BAC Information

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BAC

Clone NameB6Ng01-336F10
Chromosome10 (Build37)
Map Location 37,313,121 - 37,449,123
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336F10.bB6Ng01-336F10.g
ACCGA121289GA121290
length1,1431,192
definitionB6Ng01-336F10.b B6Ng01-336F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,447,967 - 37,449,123)(37,313,121 - 37,314,310)
sequence
gaattcaatgctgatgttcattgccaaattcagaactgatctcttgaagg
tgaaacttgtctacttttgcatggaaaacttattcacttatttttttgtt
tgtttgtttgtttgtttgttttgtttttcgagacagggtttctctggata
gccctggctgtcctggagctcactttgtagaccaggctggcctcgaactc
agaaatccacctgcctcagcctcccaagtgcttggattaaaggcgtgtgc
caccacacccagctggaaaacttattcttaaacatcctaaaaaaaatgta
taacataatttgatattttttatgtggctaatgattcacaaagcaattta
cctcagtggttctggctcccttctgcctacatttttgaatgtattctttt
aaagcttgtgttttggagaatatccaaaataatgttaatggtttgggcag
ttgggcctttgagaatggagcctcttgatggccctagtgacttgacaagg
gaagagaagtagctaaggctagaacagtactctatctcccaaagtgacat
ctgtgactacattgtgatacagttagtagaccctgccagtaccatgagat
attcccagcctaagtaaatctctattttttttttttttcccttttggttt
ttcaagacagggtttctctatatagccctggctgtcctggaatttactct
gtagaccagggtggcctcaaactcagaaatccgcctgcctctgcctccca
agtgctggtattaaaggtgtgtgccaccacgcccagcttgtactcttcca
gccaatactatgaaaacaataaaagctcacctgagattgtctcttggcaa
tgcaatcgaattgaactggagctttatcttctgatgaatggatgaacact
taagcacccacttccagtacaataactcacatgcctggtagtgtggtggt
ggctatgggcaagataccaagagactcacatggaaacatctcaaagctct
ttatatctcatgctgcagtatgtttgctataggaagcatattggtagaga
acgtaaaatccacatgtgtttccaactagcatgaaatttccaggtcatat
ttttcattggaaatggcatagtgctattatatgtcagctcctc

gaattctcctcacatcagttagtgtcacttaaagacatccactgctttat
gtaccaaaagacacaaaatgttggggcagttaggatgacaaaaagcatat
acagaaactagacctagataataggactatgaaaggcatgagtggggatt
aattcaaatctgcagtttatactcatgtaaatccacttactatactttaa
tcaggaaatcatttgtaattttttaacctagaatacctacatcttatgta
gacaattcaacaattatgcagcaatgtacacaaatagatgaaaagaaagg
aactcatgttctgagtgcctatttcataccagacagggtatgaatgtgct
ttgtctaaagcctctaatttggggagaatatgccgttttcggttatggca
gagaacacagtgtgaaaacagctccgaaaatgcggcatgttgggtttcat
ggttttgttcctctatcaacacaaggaattgtaattaaatataaatggat
tagttgatgcttcttaaaaggaagcctatgctaagaaaaatagatagttc
ctggaaatgttgactgtggaacagttataaaacttcctacagtgcatgaa
ctacagcaaccaagtgagcaaagagatcacagctacttcttctattttgg
gttaacttatcaaagtgagtagagcaaattaaatttcaaatgcacagttt
tgaagagaattggatcatccagaactaaaagcaggaaaagaatgagggaa
tgaaggagacagatgtataattattggtttgtttgtttgctggtggtttc
tcttttgtgttttgtttatttgtttgagaaaaaattttctttttcttttt
ttttattattggatattttttatctatttttcaaatgttatcccttttcc
aggtcttcccttcagaactccctatcccattccccatgcctctgactcta
tgaggtgctcccccatccacctacccactcctgctttcaagccactggca
ttcccctacactggggcatcgaacaatcctcaagctcaaggctgctcccc
acactaatgtccaacaaggcaatcctctgcaatattaatgcagcaagagc
catggtccctccatgtgttaccctttggtttggtggttcagttttctggg
agatccaggattccttcagtcttcaagtcctgtctccaactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_37447967_37449123
seq2: B6Ng01-336F10.b_48_1190 (reverse)

seq1  GAGCAGCTGACATAT-ATAGCACTATGGCTATTTCCAAAATGAAAAAATA  49
      ||| ||||||||||| |||||||||| || ||||||  |||| |||||||
seq2  GAGGAGCTGACATATAATAGCACTAT-GCCATTTCC--AATG-AAAAATA  46

seq1  TGA-CTGAAAATTTCCATGCTAGGTTGTGAAACACATGTGGTTTTTACCT  98
      ||| ||| |||||| ||||||| |||| ||||||||||||| ||||| | 
seq2  TGACCTGGAAATTT-CATGCTA-GTTG-GAAACACATGTGGATTTTA-CG  92

seq1  TTCTCTACCCCATATTGCTTCCTATAGGCAAACATACTGCAGCATGAGGA  148
      ||||||| || ||| ||||||||||| |||||||||||||||||||| ||
seq2  TTCTCTA-CCAATA-TGCTTCCTATA-GCAAACATACTGCAGCATGA-GA  138

seq1  TATAAAGAGCTTTGGAGAATGTTTCCATGGTGAGTCTCTTTGGTATCTTG  198
      ||||||||||||| ||| |||||||||| ||||||||| |||||||||||
seq2  TATAAAGAGCTTT-GAG-ATGTTTCCAT-GTGAGTCTC-TTGGTATCTTG  184

seq1  CCCATAGCCACCACCACACTACCAGGCATGTGAGTTATTGTACTGGAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATAGCCACCACCACACTACCAGGCATGTGAGTTATTGTACTGGAAGT  234

seq1  GGGTGCTTAAGTGTTCATCCATTCATCAGAAGATAAAGCTCCAGTTCAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTAAGTGTTCATCCATTCATCAGAAGATAAAGCTCCAGTTCAAT  284

seq1  TCGATTGCATTGCCAAGAGACAATCTCAGGTGAGCTTTTATTGTTTTCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTGCATTGCCAAGAGACAATCTCAGGTGAGCTTTTATTGTTTTCAT  334

seq1  AGTATTGGCTGGAAGAGTACAAGCTGGGCGTGGTGGCACACACCTTTAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGCTGGAAGAGTACAAGCTGGGCGTGGTGGCACACACCTTTAAT  384

seq1  ACCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCACC  434

seq1  CTGGTCTACAGAGTAAATTCCAGGACAGCCAGGGCTATATAGAGAAACCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGTAAATTCCAGGACAGCCAGGGCTATATAGAGAAACCC  484

seq1  TGTCTTGAAAAACCAAAAGGGAAAAAAAAAAAAAATAGAGATTTACTTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAAAAACCAAAAGGGAAAAAAAAAAAAAATAGAGATTTACTTAG  534

seq1  GCTGGGAATATCTCATGGTACTGGCAGGGTCTACTAACTGTATCACAATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAATATCTCATGGTACTGGCAGGGTCTACTAACTGTATCACAATG  584

seq1  TAGTCACAGATGTCACTTTGGGAGATAGAGTACTGTTCTAGCCTTAGCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAGATGTCACTTTGGGAGATAGAGTACTGTTCTAGCCTTAGCTA  634

seq1  CTTCTCTTCCCTTGTCAAGTCACTAGGGCCATCAAGAGGCTCCATTCTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTCCCTTGTCAAGTCACTAGGGCCATCAAGAGGCTCCATTCTCA  684

seq1  AAGGCCCAACTGCCCAAACCATTAACATTATTTTGGATATTCTCCAAAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCAACTGCCCAAACCATTAACATTATTTTGGATATTCTCCAAAAC  734

seq1  ACAAGCTTTAAAAGAATACATTCAAAAATGTAGGCAGAAGGGAGCCAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTAAAAGAATACATTCAAAAATGTAGGCAGAAGGGAGCCAGAA  784

seq1  CCACTGAGGTAAATTGCTTTGTGAATCATTAGCCACATAAAAAATATCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGGTAAATTGCTTTGTGAATCATTAGCCACATAAAAAATATCAA  834

seq1  ATTATGTTATACATTTTTTTTAGGATGTTTAAGAATAAGTTTTCCAGCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTATACATTTTTTTTAGGATGTTTAAGAATAAGTTTTCCAGCTG  884

seq1  GGTGTGGTGGCACACGCCTTTAATCCAAGCACTTGGGAGGCTGAGGCAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGTGGCACACGCCTTTAATCCAAGCACTTGGGAGGCTGAGGCAGG  934

seq1  TGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCTCCAGGAC  984

seq1  AGCCAGGGCTATCCAGAGAAACCCTGTCTCGAAAAACAAAACAAACAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGGCTATCCAGAGAAACCCTGTCTCGAAAAACAAAACAAACAAAC  1034

seq1  AAACAAACAAACAAAAAAATAAGTGAATAAGTTTTCCATGCAAAAGTAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAAAAAATAAGTGAATAAGTTTTCCATGCAAAAGTAGA  1084

seq1  CAAGTTTCACCTTCAAGAGATCAGTTCTGAATTTGGCAATGAACATCAGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCACCTTCAAGAGATCAGTTCTGAATTTGGCAATGAACATCAGC  1134

seq1  ATTGAATTC  1157
      |||||||||
seq2  ATTGAATTC  1143


seq1: chr10_37313121_37314310
seq2: B6Ng01-336F10.g_68_1259

seq1  GAATTCTCCTCACATCAGTTAGTGTCACTTAAAGACATCCACTGCTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCACATCAGTTAGTGTCACTTAAAGACATCCACTGCTTTAT  50

seq1  GTACCAAAAGACACAAAATGTTGGGGCAGTTAGGATGACAAAAAGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAAGACACAAAATGTTGGGGCAGTTAGGATGACAAAAAGCATAT  100

seq1  ACAGAAACTAGACCTAGATAATAGGACTATGAAAGGCATGAGTGGGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACTAGACCTAGATAATAGGACTATGAAAGGCATGAGTGGGGATT  150

seq1  AATTCAAATCTGCAGTTTATACTCATGTAAATCCACTTACTATACTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAATCTGCAGTTTATACTCATGTAAATCCACTTACTATACTTTAA  200

seq1  TCAGGAAATCATTTGTAATTTTTTAACCTAGAATACCTACATCTTATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATCATTTGTAATTTTTTAACCTAGAATACCTACATCTTATGTA  250

seq1  GACAATTCAACAATTATGCAGCAATGTACACAAATAGATGAAAAGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCAACAATTATGCAGCAATGTACACAAATAGATGAAAAGAAAGG  300

seq1  AACTCATGTTCTGAGTGCCTATTTCATACCAGACAGGGTATGAATGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGTTCTGAGTGCCTATTTCATACCAGACAGGGTATGAATGTGCT  350

seq1  TTGTCTAAAGCCTCTAATTTGGGGAGAATATGCCGTTTTCGGTTATGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAAAGCCTCTAATTTGGGGAGAATATGCCGTTTTCGGTTATGGCA  400

seq1  GAGAACACAGTGTGAAAACAGCTCCGAAAATGCGGCATGTTGGGTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACACAGTGTGAAAACAGCTCCGAAAATGCGGCATGTTGGGTTTCAT  450

seq1  GGTTTTGTTCCTCTATCAACACAAGGAATTGTAATTAAATATAAATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTTCCTCTATCAACACAAGGAATTGTAATTAAATATAAATGGAT  500

seq1  TAGTTGATGCTTCTTAAAAGGAAGCCTATGCTAAGAAAAATAGATAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGATGCTTCTTAAAAGGAAGCCTATGCTAAGAAAAATAGATAGTTC  550

seq1  CTGGAAATGTTGACTGTGGAACAGTTATAAAACTTCCTACAGTGCATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAATGTTGACTGTGGAACAGTTATAAAACTTCCTACAGTGCATGAA  600

seq1  CTACAGCAACCAAGTGAGCAAAGAGATCACAGCTACTTCTTCTATTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGCAACCAAGTGAGCAAAGAGATCACAGCTACTTCTTCTATTTTGG  650

seq1  GTTAACTTATCAAAGTGAGTAGAGCAAATTAAATTTCAAATGCACAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACTTATCAAAGTGAGTAGAGCAAATTAAATTTCAAATGCACAGTTT  700

seq1  TGAAGAGAATTGGATCATCCAGAACTAAAAGCAGGAAAAGAATGAGGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAATTGGATCATCCAGAACTAAAAGCAGGAAAAGAATGAGGGAA  750

seq1  TGAAGGAGACAGATGTATAATTATTGGTTTGTTTGTTTGCTGGTGGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGACAGATGTATAATTATTGGTTTGTTTGTTTGCTGGTGGTTTC  800

seq1  TCTTTTGTGTTTTGTTTATTTGTTTGAGAAAAAATTTTCTTTTTCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGTGTTTTGTTTATTTGTTTGAGAAAAAATTTTCTTTTTCTTTTT  850

seq1  TTTTATTATTGGATATTTTTTATCTATTTTTCAAATGTTATCCCTTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATTGGATATTTTTTATCTATTTTTCAAATGTTATCCCTTTTCC  900

seq1  AGGTCTTCCCTTCAGAACTCCCTATCCCATTCCCCATGCCTCTGACTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTCCCTTCAGAACTCCCTATCCCATTCCCCATGCCTCTGACTCTA  950

seq1  TGAGGGTGCTCCCCCATCCACCTACCCACTCCTGCTTTCCAG-CACTGGC  999
      ||| ||||||||||||||||||||||||||||||||||| || |||||||
seq2  TGA-GGTGCTCCCCCATCCACCTACCCACTCCTGCTTTCAAGCCACTGGC  999

seq1  ATTCCCCTACACTGGGGCATCGAAC-ATCCTCAGGCTCAAGGGCTGCTCC  1048
      ||||||||||||||||||||||||| ||||||| |||||| |||||||||
seq2  ATTCCCCTACACTGGGGCATCGAACAATCCTCAAGCTCAA-GGCTGCTCC  1048

seq1  CCACACTAATGTCCAACAAGGCCATCCTCTGCCATAT--ATGCAGCCAGA  1096
      |||||||||||||||||||||| ||||||||| ||||  ||||||| |||
seq2  CCACACTAATGTCCAACAAGGCAATCCTCTGCAATATTAATGCAGCAAGA  1098

seq1  GGCATGGGTCCCTCCATGTG-TACCCTTTGG-TTGGTGGTCCAG-TTTCT  1143
      | ||| |||||||||||||| |||||||||| |||||||| ||| |||||
seq2  GCCAT-GGTCCCTCCATGTGTTACCCTTTGGTTTGGTGGTTCAGTTTTCT  1147

seq1  GGGAGATCCAGGGGGTCCCTCAGCTCCTTCAGTCCCTGCTCCAACTC  1190
      |||||||||| ||  ||| |||| || |  |||||   |||||||||
seq2  GGGAGATCCA-GGATTCCTTCAG-TCTTCAAGTCCTGTCTCCAACTC  1192


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