BAC Information

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BAC

Clone NameB6Ng01-336J13
Chromosome10 (Build37)
Map Location 13,994,689 - 13,995,880
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
Downstream geneGpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336J13.bB6Ng01-336J13.g
ACCGA121471GA121472
length1,1861,193
definitionB6Ng01-336J13.b B6Ng01-336J13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacaaaaacagctagcttcgctctatgcaacatttccactcct
caggtagaggtaaaaatagatatacatgtaaaattttcaaaacaggagtt
ttacgcttccaggacttctccatatgaattaaatcctgttatattcacct
ttaaaacccacattgcacaatgtaaattgaagtggtgaaactcacttgaa
ctataagtcttatttttattttctaaagacaacgacaagtagaatttaca
atgccataataccaaagggaagatccttacacttcagcaaagagtttcca
ctgactctgtcgttcttgccttttaccaaataagcctcgctgcattcttc
tactgccccagacctgcaaaccatagagctggctttgcttagcctacctt
tgtatccattctcttcacttctaagtcacaatacctcactgtgctctggt
gctgtggtccagattttaatggtgattatcagcttacaacgagaaaacaa
ggcaggcttgtttaaatagtttccacctcacctaagttgccgtatccata
atttcgtagtcaaaataaatgcattcagctttgcccatctttggttattt
tctggctttttattttttaatgttctgctcatgaaataatgagtttggta
cagggaggctcatgtagctatttaagttaattattgcttgttgagtttca
tcattgagacagttatctgctattgaaaaaataggaacacttggtagact
ctgaactataggagggaacagtctagaatttctgctgagtaagcaaatat
ataaatgagcaggcagttgtttcattgctgtttagagcacaagtgtgacc
ttgttaaaggtcatgagccactgacagcctttaacactttacccattgct
catatgttgcttatgaagaagattggttgctgtggtgtgatggctaattt
tggctgtcacttgatgacatcgggcctcaactaaaattcaagcagctctg
tacatctttgagacttttcttgataggattctcagtcacttctctactgc
tgtgaccaaacagcatgaccaagcaactctaaaagaaagtgtttgttttg
gggattatgatttcagagggtcagtctatggccattcatggttggagcat
ggcagcagcaagtaggcaggcatacttctgaacagt
gaattctttgtttacctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctatatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
tttgtcttattgacggtgtcttttgccttgcagaagctttgcgattttat
gaggtcccatttgccgattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcataacgacacagattccattcatgcagacacagc
tttcagctctgatcatctccaggtctcacctcttgagacgattacaagat
taagtcttaacataagaattgcccgggaggtggtggcacacgcctttaat
cccagcactcaggaggcagaggcaggtggatttttgagttcgaggccagc
ctggtctacagagttccaggacagccaggggtatacagagaaaccctgtc
tcagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaga
aagaaacctaaataaataaataaataaatagaatgttgggggagtcatca
acatcagaccatagtgtccttcaaaaccacaggctgaggtagtcttaaaa
attatcttactaattcctatgactcgagaatcactctcctagttatcagt
tgtcaaggggttctcaacgacccactttctttctacctttcctaattctg
ttcttatttttcaaaggagtaaataaactcaatccttgttacaataatct
ggggctttggatacttccatatggacattttctcctaaaaatgaggcata
aacagaagatttttatagtaaggctgttaagtctcaagcattttgcccac
tctcgtggaaaactaaaatttcctaacctttaagaaaaagaacattttat
acattgcaggccacggtgagcctggagcatgattgcttaaaaggcctagt
attgcctcaaggtcttcctttttctagggtcaaggaggaggaattggcta
ctggagggggtagggtggtttctgttgaatggatagacaatggtctatgt
agccttttccacagttctgaactctcatgatgatagatgttaatcttttg
aacggtgtcaaccatatttccaacagagctacgagatatgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_13994689_13995880
seq2: B6Ng01-336J13.b_47_1232

seq1  GAATTCAAACAAAAACAGCTAGCTTCGCTCTATGCAACATTTCCACTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAAAAACAGCTAGCTTCGCTCTATGCAACATTTCCACTCCT  50

seq1  CAGGTAGAGGTAAAAATAGATATACATGTAAAATTTTCAAAACAGGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAGGTAAAAATAGATATACATGTAAAATTTTCAAAACAGGAGTT  100

seq1  TTACGCTTCCAGGACTTCTCCATATGAATTAAATCCTGTTATATTCACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCTTCCAGGACTTCTCCATATGAATTAAATCCTGTTATATTCACCT  150

seq1  TTAAAACCCACATTGCACAATGTAAATTGAAGTGGTGAAACTCACTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCCACATTGCACAATGTAAATTGAAGTGGTGAAACTCACTTGAA  200

seq1  CTATAAGTCTTATTTTTATTTTCTAAAGACAACGACAAGTAGAATTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGTCTTATTTTTATTTTCTAAAGACAACGACAAGTAGAATTTACA  250

seq1  ATGCCATAATACCAAAGGGAAGATCCTTACACTTCAGCAAAGAGTTTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATAATACCAAAGGGAAGATCCTTACACTTCAGCAAAGAGTTTCCA  300

seq1  CTGACTCTGTCGTTCTTGCCTTTTACCAAATAAGCCTCGCTGCATTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGTCGTTCTTGCCTTTTACCAAATAAGCCTCGCTGCATTCTTC  350

seq1  TACTGCCCCAGACCTGCAAACCATAGAGCTGGCTTTGCTTAGCCTACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCCCAGACCTGCAAACCATAGAGCTGGCTTTGCTTAGCCTACCTT  400

seq1  TGTATCCATTCTCTTCACTTCTAAGTCACAATACCTCACTGTGCTCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCATTCTCTTCACTTCTAAGTCACAATACCTCACTGTGCTCTGGT  450

seq1  GCTGTGGTCCAGATTTTAATGGTGATTATCAGCTTACAACGAGAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGTCCAGATTTTAATGGTGATTATCAGCTTACAACGAGAAAACAA  500

seq1  GGCAGGCTTGTTTAAATAGTTTCCACCTCACCTAAGTTGCCGTATCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCTTGTTTAAATAGTTTCCACCTCACCTAAGTTGCCGTATCCATA  550

seq1  ATTTCGTAGTCAAAATAAATGCATTCAGCTTTGCCCATCTTTGGTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTAGTCAAAATAAATGCATTCAGCTTTGCCCATCTTTGGTTATTT  600

seq1  TCTGGCTTTTTATTTTTTAATGTTCTGCTCATGAAATAATGAGTTTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTTTATTTTTTAATGTTCTGCTCATGAAATAATGAGTTTGGTA  650

seq1  CAGGGAGGCTCATGTAGCTATTTAAGTTAATTATTGCTTGTTGAGTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGGCTCATGTAGCTATTTAAGTTAATTATTGCTTGTTGAGTTTCA  700

seq1  TCATTGAGACAGTTATCTGCTATTGAAAAAATAGGAACACTTGGTAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAGACAGTTATCTGCTATTGAAAAAATAGGAACACTTGGTAGACT  750

seq1  CTGAACTATAGGAGGGAACAGTCTAGAATTTCTGCTGAGTAAGCAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTATAGGAGGGAACAGTCTAGAATTTCTGCTGAGTAAGCAAATAT  800

seq1  ATAAATGAGCAGGCAGTTGTTTCATTGCTGTTTAGAGCACAAGTGTGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGCAGGCAGTTGTTTCATTGCTGTTTAGAGCACAAGTGTGACC  850

seq1  TTGTT-AAGGTCATGAGCCACTGACAGCCTTTAACACTTTACCCATTGCT  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAGGTCATGAGCCACTGACAGCCTTTAACACTTTACCCATTGCT  900

seq1  CATATGTTGCTTATGAAGAAGATTGGTTGCTGTGGTGTGATGGCTAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTGCTTATGAAGAAGATTGGTTGCTGTGGTGTGATGGCTAATTT  950

seq1  TGGCTGTCAACTTGATGACATCGGGCCTCAACTAAAATTCAAGCAGCTCT  999
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTC-ACTTGATGACATCGGGCCTCAACTAAAATTCAAGCAGCTCT  999

seq1  GTACATCTTTGAAGACTTTTCTTGATAGGATTCTCAGTCACTTCTCTACT  1049
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTTTG-AGACTTTTCTTGATAGGATTCTCAGTCACTTCTCTACT  1048

seq1  GCTGTGACCAAACAGCATGACCAAGGCAACTTCTAAAAGAAAGTGTTTGT  1099
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  GCTGTGACCAAACAGCATGACCAA-GCAAC-TCTAAAAGAAAGTGTTTGT  1096

seq1  TTT-GGGATTATGATTTCAGAGGGTTCAAGTCTATGGCCA-TCATGGTGG  1147
      ||| |||||||||||||||||||||   |||||||||||| ||||||| |
seq2  TTTGGGGATTATGATTTCAGAGGGT--CAGTCTATGGCCATTCATGGTTG  1144

seq1  GAAGCATTGCAGCAGGCAGGTAGGCAGGCATACTTCTGGAACAGT  1192
      | ||||| |||||| ||| |||||||||||||||||| |||||||
seq2  G-AGCATGGCAGCA-GCAAGTAGGCAGGCATACTTCT-GAACAGT  1186