BAC Information

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BAC

Clone NameB6Ng01-336L20
Chromosome10 (Build37)
Map Location 45,497,621 - 45,656,430
singlet/doubletdoublet
Overlap geneLOC664781
Upstream geneLOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps, LOC100042364, Hace1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336L20.bB6Ng01-336L20.g
ACCGA121573GA121574
length985911
definitionB6Ng01-336L20.b B6Ng01-336L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,497,621 - 45,498,610)(45,655,510 - 45,656,430)
sequence
gaattcagttggctttgagcaggcattctgtttctggcttaggaattcag
atgctatttgaattcagagttcacagcaaacttgctgcagctactttaga
cacttagagctttttttctggaagggctttattatgacctaacctatgga
ctggactgggcacctgtctgtgctaatcagttgtgccaggaggaaatgga
ggcttggtctggttgtatgctctagtaaacaaacagaagaaaacccaagt
gcacacaaaagaaactgacacctggaatttttttttttttcttcaaaatc
tgtgattttttttttaatgtgtgtgtgtgtggtagaaataagttcaaaca
ctcatagctcagttaagtttcaggacattgtttattcatatttcctctgt
ctctagagtgctgtagcctggttttagatgcttctgattgagttagtggg
gttctatgagactctatgttagcctagagctaaacacaagaaaaaaggta
ctagatttggcctttagttcaaatactggctccttggaaccaggtgggtg
ttaggaacctacaagagggaactgtctttatttcagtgtctatacttgat
gaatcatttgtctctgacattagatcttcaaagatactttatttagctac
gaaaactacccctctgactcaactaaactttgaggagatactttgaaatc
aagcctcaagtttattcagctcaagctttatagattggtgtcatttgtgg
agtggggttctcattaagaaaaatcccgggcaatttgacctttaagaaga
atgacttgacatggagagcaagcccagcagaagcctgaaccatcattgaa
agcagaacgtcttcatatttggagtcatactagagtgactaaagtctcac
acttaaaatgagaacggctttttggataaaagatatgatctttatccccc
ccccactgatctcaattcctcctgttgctttcttt

gaattcattggcaaataaggtttggaaagaataggtaaatacaagaatga
tcacagaaacagggttccttctgtagagatgttaagatgctttaagttac
tattttccagaaatttgggggttagtaagtaaaataaacatttaattatt
atttttaatttttacttaaaatgttttctttataccatggaactttctaa
acatacataaactatgaaaaatgagcacagagaaccatcacaaaggtcct
tcctcctatgacaatcttacccaataatgttttcctcaaatctacttaag
tgctccaagtcagcctattaacataattctaaatatttatacaagtttat
tgaaatctttctaaaatatttgctccaaaccagccactattaccttaaaa
cttcacagtaatcacttaatattcacaagtatacagttaataattaaaat
ttccccagttggctaatatgtttttaattttcttaagtataatacatgag
tcaattagtttctacattatacaatgtacacatttaaaactgtgtggtat
gtggtaaattatgtgtgtgtatatatacacacacatgtatataattacat
taaattatataaatatataatatatatttagtctattcaaactaaatata
agtttttaagtaaataacaaaagattctagtaagttctacacattgtggc
tagttaataacccttcttacaactctttaattcagattctattcttacct
tctgaaatgaatttgtaaaacaagccatacagttttcattatgagatctt
gggactactgcttgtattactcaaggccagatgcaaagacccgtggacct
gtgctgtaaaatgttgatcaaacgttctttaaaagtgcagtaggtaatta
aagtatcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_45497621_45498610
seq2: B6Ng01-336L20.b_46_1030

seq1  GAATTCAGTTGGCTTTGAGCAGGCATTCTGTTTCTGGCTTAGGAATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGGCTTTGAGCAGGCATTCTGTTTCTGGCTTAGGAATTCAG  50

seq1  ATGCTATTTGAATTCAGAGTTCACAGCAAACTTGCTGCAGCTACTTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTTGAATTCAGAGTTCACAGCAAACTTGCTGCAGCTACTTTAGA  100

seq1  CACTTAGAGCTTTTTTTCTGGAAGGGCTTTATTATGACCTAACCTATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAGCTTTTTTTCTGGAAGGGCTTTATTATGACCTAACCTATGGA  150

seq1  CTGGACTGGGCACCTGTCTGTGCTAATCAGTTGTGCCAGGAGGAAATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGGGCACCTGTCTGTGCTAATCAGTTGTGCCAGGAGGAAATGGA  200

seq1  GGCTTGGTCTGGTTGTATGCTCTAGTAAACAAACAGAAGAAAACCCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGTCTGGTTGTATGCTCTAGTAAACAAACAGAAGAAAACCCAAGT  250

seq1  GCACACAAAAGAAACTGACACCTGGAATTTTTTTTTTTTTCTTCAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAAAAGAAACTGACACCTGGAATTTTTTTTTTTTTCTTCAAAATC  300

seq1  TGTGATTTTTTTTTTAATGTGTGTGTGTGTGGTAGAAATAAGTTCAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTTTTTTTTTAATGTGTGTGTGTGTGGTAGAAATAAGTTCAAACA  350

seq1  CTCATAGCTCAGTTAAGTTTCAGGACATTGTTTATTCATATTTCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGCTCAGTTAAGTTTCAGGACATTGTTTATTCATATTTCCTCTGT  400

seq1  CTCTAGAGTGCTGTAGCCTGGTTTTAGATGCTTCTGATTGAGTTAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGTGCTGTAGCCTGGTTTTAGATGCTTCTGATTGAGTTAGTGGG  450

seq1  GTTCTATGAGACTCTATGTTAGCCTAGAGCTAAACACAAGAAAAAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGAGACTCTATGTTAGCCTAGAGCTAAACACAAGAAAAAAGGTA  500

seq1  CTAGATTTGGCCTTTAGTTCAAATACTGGCTCCTTGGAACCAGGTGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTTGGCCTTTAGTTCAAATACTGGCTCCTTGGAACCAGGTGGGTG  550

seq1  TTAGGAACCTACAAGAGGGAACTGTCTTTATTTCAGTGTCTATACTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAACCTACAAGAGGGAACTGTCTTTATTTCAGTGTCTATACTTGAT  600

seq1  GAATCATTTGTCTCTGACATTAGATCTTCAAAGATACTTTATTTAGCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTTGTCTCTGACATTAGATCTTCAAAGATACTTTATTTAGCTAC  650

seq1  GAAAACTACCCCTCTGACTCAACTAAACTTTGAGGAGATACTTTGAAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTACCCCTCTGACTCAACTAAACTTTGAGGAGATACTTTGAAATC  700

seq1  AAGCCTCAAGTTTATTCAGCTCAAGCTTTATAGATTGGTGTCATTTGT-G  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGCCTCAAGTTTATTCAGCTCAAGCTTTATAGATTGGTGTCATTTGTGG  750

seq1  AGTGGGGTTCTCATTAAGAAACATCCCGGGCAATTTGACCTTTAAGGAGA  799
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  AGTGGGGTTCTCATTAAGAAAAATCCCGGGCAATTTGACCTTTAAGAAGA  800

seq1  ATGACTTGACATGAGAG-GCAGGCCCAGGCAG-AGCCTGGAACCATCATT  847
      ||||||||||||| ||| ||| ||||| |||| ||||| |||||||||||
seq2  ATGACTTGACATG-GAGAGCAAGCCCA-GCAGAAGCCT-GAACCATCATT  847

seq1  GAAAGCAG-ACGTCTCAATATTTGAAGTCATACTTAGAAGTGACTAAAAG  896
      |||||||| ||||||  ||||||| |||||||| ||| ||||||||||  
seq2  GAAAGCAGAACGTCTTCATATTTGGAGTCATAC-TAG-AGTGACTAAA--  893

seq1  TTCTCACACTTTAAAAATTGAGAATAGGCCTTTTTTGGAT-AAAGATAAT  945
       ||||||||||   ||| ||||||  |||  ||||||||| |||||| ||
seq2  GTCTCACACTT---AAAATGAGAA-CGGC--TTTTTGGATAAAAGAT-AT  936

seq1  GATCCTTCTAATCCCCCCCCCCCCACCTGATCTCAAAT-----------T  984
      |||| ||   |||||||||||     |||||||||| |           |
seq2  GATCTTT---ATCCCCCCCCC----ACTGATCTCAATTCCTCCTGTTGCT  979

seq1  TTCTTT  990
      ||||||
seq2  TTCTTT  985


seq1: chr10_45655510_45656430
seq2: B6Ng01-336L20.g_65_975 (reverse)

seq1  GAATAGATAC-TTAATTACCTTACCTTGCACTTATAAAAGAACGTCTGGA  49
      |||| ||||| ||||||||| |||  ||||||| | ||||||||| | ||
seq2  GAAT-GATACTTTAATTACC-TAC--TGCACTT-TTAAAGAACGT-TTGA  44

seq1  TCAACATTCTACAGCACAGGTCCACAGTGTCTTTGCATCTGGCACTGGAG  99
      |||||||| |||||||||||||||| | ||||||||||||||| || |||
seq2  TCAACATTTTACAGCACAGGTCCAC-GGGTCTTTGCATCTGGC-CTTGAG  92

seq1  TAAATAC-AGCAGGTAGTCACAAAGATCTCATAATGAAAAACTGTATGGC  148
      | ||||| |||| |||||| | |||||||||||||| |||||||||||||
seq2  T-AATACAAGCA-GTAGTC-CCAAGATCTCATAATG-AAAACTGTATGGC  138

seq1  TTGTTTAACAAATACATTTCAAGAAGGTAAGAATAGAAATCTGAATTAAA  198
      |||||| |||||| |||||| ||||||||||||||| |||||||||||||
seq2  TTGTTTTACAAATTCATTTC-AGAAGGTAAGAATAG-AATCTGAATTAAA  186

seq1  GAGTTGTAAG-AGGGTTATTAACTAGCCACAATGTGTAGAACTTACTAGA  247
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTAAGAAGGGTTATTAACTAGCCACAATGTGTAGAACTTACTAGA  236

seq1  ATCTTTTGTTATTTACTTAAAAACTTATATTTAGTTTGAATAGACTAAAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGTTATTTACTTAAAAACTTATATTTAGTTTGAATAGACTAAAT  286

seq1  ATATATTATATATTTATATAA-TTAATGTAATTATATACATGTGTGTGTA  346
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATATTATATATTTATATAATTTAATGTAATTATATACATGTGTGTGTA  336

seq1  TATATACACACACATAATTTACCACATACCACACAGTTTTAAATGTGTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACACACACATAATTTACCACATACCACACAGTTTTAAATGTGTAC  386

seq1  ATTGTATAATGTAGAAACTAATTGACTCATGTATTATACTTAAGAAAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAATGTAGAAACTAATTGACTCATGTATTATACTTAAGAAAATT  436

seq1  AAAAACATATTAGCCAACTGGGGAAATTTTAATTATTAACTGTATACTTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATATTAGCCAACTGGGGAAATTTTAATTATTAACTGTATACTTG  486

seq1  TGAATATTAAGTGATTACTGTGAAGTTTTAAGGTAATAGTGGCTGGTTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAAGTGATTACTGTGAAGTTTTAAGGTAATAGTGGCTGGTTTG  536

seq1  GAGCAAATATTTTAGAAAGATTTCAATAAACTTGTATAAATATTTAGAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAATATTTTAGAAAGATTTCAATAAACTTGTATAAATATTTAGAAT  586

seq1  TATGTTAATAGGCTGACTTGGAGCACTTAAGTAGATTTGAGGAAAACATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAATAGGCTGACTTGGAGCACTTAAGTAGATTTGAGGAAAACATT  636

seq1  ATTGGGTAAGATTGTCATAGGAGGAAGGACCTTTGTGATGGTTCTCTGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTAAGATTGTCATAGGAGGAAGGACCTTTGTGATGGTTCTCTGTG  686

seq1  CTCATTTTTCATAGTTTATGTATGTTTAGAAAGTTCCATGGTATAAAGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTCATAGTTTATGTATGTTTAGAAAGTTCCATGGTATAAAGAA  736

seq1  AACATTTTAAGTAAAAATTAAAAATAATAATTAAATGTTTATTTTACTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTAAGTAAAAATTAAAAATAATAATTAAATGTTTATTTTACTTA  786

seq1  CTAACCCCCAAATTTCTGGAAAATAGTAACTTAAAGCATCTTAACATCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCCCCAAATTTCTGGAAAATAGTAACTTAAAGCATCTTAACATCTC  836

seq1  TACAGAAGGAACCCTGTTTCTGTGATCATTCTTGTATTTACCTATTCTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGAACCCTGTTTCTGTGATCATTCTTGTATTTACCTATTCTTT  886

seq1  CCAAACCTTATTTGCCAATGAATTC  921
      |||||||||||||||||||||||||
seq2  CCAAACCTTATTTGCCAATGAATTC  911


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