BAC Information

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BAC

Clone NameB6Ng01-336M20
Chromosome10 (Build37)
Map Location 14,732,564 - 14,825,388
singlet/doubletdoublet
Overlap genenone
Upstream geneHivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik, EG666904, Nmbr, LOC666917
Downstream geneLOC637043, LOC100039492, LOC671439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336M20.bB6Ng01-336M20.g
ACCGA121617GA121618
length1,153370
definitionB6Ng01-336M20.b B6Ng01-336M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,732,564 - 14,733,722)(14,825,014 - 14,825,388)
sequence
gaattctcagtttagttcagtaccccattttttttaattggcacttattt
tctgagaaatcatttagaagaaaacagtaggccatgtaaatgcctcaggt
tatcagaaattacaaagtgaaagatgaaggaagagctcagcaagtttgaa
agtttgtgtgtatgaagccaagtccgggcatggccgatgtacattagagg
gtgctgtgggttcccgattgtccctgctgcttgtttggtaatccccaaat
aattattcatcaactccccaagatgtgattctcaggaaatgaagaagaca
ctcaattaaaaatattaatatgggtcaaaaaggggatttgagaaaattac
aaaataatttactctcgtatggagttagttttaattagtttgattcacaa
aataccattagtttcttcttcgacctcattgttcatttcttcttattggt
tcccatgtttatatgtctcagttatgaaattcaaataattgtttcgctaa
aattctttaaaggacttgtttacagaatcaggaaagggaactgagatttt
cctgtgtcattggttgtaaagctgaaaagagaatagagtaataaatatat
ggcagtcacactaaatctacattaaactgcaaacatctgttctctctgtg
tctctctttctttacctctgtctggctctggctctctgtatctctctttg
tctttgtatctctttgtttctgcctctatgtctgtctgtctctctctctc
ttctctctctcttccctcctcttctttttcttctctcctctctctctctc
tctctctctctctcacacacacatatacacactcatgttgtaacaacagt
gaaatagaaaatgtctgagattgaattagactaagaggggtaaatgagaa
ggtttgtaggaagaagagcgataaatgatgtagttatataataatctcaa
aaatataaaagaataaaaaatctttatttatatatttcttttgcttactt
aactcttacttaaaaatacagctctgttggtgagatatgattttcattaa
tagttttctatgacttgctttctaaattctatgaacatctactgctgatg
aatatatttgcatgtcagtccactttatgtctcatgtcactgaattaaat
tta

agaacttccagaaagggagaggcaaactagtgggtgagtgacaagagcat
gcccagaggaataacttgcttaggagagtaagccaaaatgaaactcctaa
cagagttattcttttcatgaatgcagtccttcctaaaaacattttcactg
gtctagcaaactttgtatgccccagtacaggggaatgctagggccaagaa
atgggattgggtgggtaggagagcaaggcggtggtggggagggtataggg
gacttttgggatagcatttgaaatgtaaatgaagaaaatatctaataaaa
aattagaaaaaaaaaacattttcacttgtactaattgtctatgtctctct
aattttcatcctcaaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_14732564_14733722
seq2: B6Ng01-336M20.b_52_1204

seq1  GAATTCTCAGTTTAGTTCAGTACCCCATTTTTTTTAATTGGCACTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTAGTTCAGTACCCCATTTTTTTTAATTGGCACTTATTT  50

seq1  TCTGAGAAATCATTTAGAAGAAAACAGTAGGCCATGTAAATGCCTCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAATCATTTAGAAGAAAACAGTAGGCCATGTAAATGCCTCAGGT  100

seq1  TATCAGAAATTACAAAGTGAAAGATGAAGGAAGAGCTCAGCAAGTTTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAAATTACAAAGTGAAAGATGAAGGAAGAGCTCAGCAAGTTTGAA  150

seq1  AGTTTGTGTGTATGAAGCCAAGTCCGGGCATGGCCGATGTACATTAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGTGTATGAAGCCAAGTCCGGGCATGGCCGATGTACATTAGAGG  200

seq1  GTGCTGTGGGTTCCCGATTGTCCCTGCTGCTTGTTTGGTAATCCCCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGGGTTCCCGATTGTCCCTGCTGCTTGTTTGGTAATCCCCAAAT  250

seq1  AATTATTCATCAACTCCCCAAGATGTGATTCTCAGGAAATGAAGAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCATCAACTCCCCAAGATGTGATTCTCAGGAAATGAAGAAGACA  300

seq1  CTCAATTAAAAATATTAATATGGGTCAAAAAGGGGATTTGAGAAAATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTAAAAATATTAATATGGGTCAAAAAGGGGATTTGAGAAAATTAC  350

seq1  AAAATAATTTACTCTCGTATGGAGTTAGTTTTAATTAGTTTGATTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTACTCTCGTATGGAGTTAGTTTTAATTAGTTTGATTCACAA  400

seq1  AATACCATTAGTTTCTTCTTCGACCTCATTGTTCATTTCTTCTTATTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCATTAGTTTCTTCTTCGACCTCATTGTTCATTTCTTCTTATTGGT  450

seq1  TCCCATGTTTATATGTCTCAGTTATGAAATTCAAATAATTGTTTCGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGTTTATATGTCTCAGTTATGAAATTCAAATAATTGTTTCGCTAA  500

seq1  AATTCTTTAAAGGACTTGTTTACAGAATCAGGAAAGGGAACTGAGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAAAGGACTTGTTTACAGAATCAGGAAAGGGAACTGAGATTTT  550

seq1  CCTGTGTCATTGGTTGTAAAGCTGAAAAGAGAATAGAGTAATAAATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCATTGGTTGTAAAGCTGAAAAGAGAATAGAGTAATAAATATAT  600

seq1  GGCAGTCACACTAAATCTACATTAAACTGCAAACATCTGTTCTCTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCACACTAAATCTACATTAAACTGCAAACATCTGTTCTCTCTGTG  650

seq1  TCTCTCTTTCTTTACCTCTGTCTGGCTCTGGCTCTCTGTATCTCTCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTCTTTACCTCTGTCTGGCTCTGGCTCTCTGTATCTCTCTTTG  700

seq1  TCTTTGTATCTCTTTGTTTCTGCCTCTATGTCTGTCTGTCTCTCTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTATCTCTTTGTTTCTGCCTCTATGTCTGTCTGTCTCTCTCTCTC  750

seq1  TTCTCTCTCTCTTCCCTCCTCTTCTTTTTCTTCTCTCCTCTCTCTCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCTCTTCCCTCCTCTTCTTTTTCTTCTCTCCTCTCTCTCTCTC  800

seq1  TCTCTCTCTCTCTCACACACACATATACACACTCATGTTGTAACAACAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCACACACACATATACACACTCATGTTGTAACAACAGT  850

seq1  GAAATAGAAAATGTCTGAGATTGAATTAGACTAAGAGGGGTAAATGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAAAATGTCTGAGATTGAATTAGACTAAGAGGGGTAAATGAGAA  900

seq1  GGTTTGTAGGAAGAAGAGCGATAAATGATGTAGTTATATAATAATCTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAGGAAGAAGAGCGATAAATGATGTAGTTATATAATAATCTCAA  950

seq1  AAATATAAAAGAATAAAAAATCTTTTATTTATATATTTCTTTTGCTTACT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAATATAAAAGAATAAAAAATC-TTTATTTATATATTTCTTTTGCTTACT  999

seq1  TAACTCTTACTTAAAAATACAGCTCTGTTTGGTGAGATATGATTTTCATT  1050
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TAACTCTTACTTAAAAATACAGCTCTG-TTGGTGAGATATGATTTTCA-T  1047

seq1  TAATAGTTTTCTATGACTTGCTTTCCTAAATTCTATGAACATCTACTGCC  1100
      |||||||||||||||||||||||| ||||||||||||||||||||||| |
seq2  TAATAGTTTTCTATGACTTGCTTT-CTAAATTCTATGAACATCTACTG-C  1095

seq1  TGATG-ATATA-TTGCATGGTCAGTTCACTTTAATGTCTCATGTCACTGA  1148
      ||||| ||||| |||||| |||||| |||||| |||||||||||||||||
seq2  TGATGAATATATTTGCAT-GTCAGTCCACTTT-ATGTCTCATGTCACTGA  1143

seq1  TTTAATATTTA  1159
       |||| |||||
seq2  ATTAA-ATTTA  1153


seq1: chr10_14825014_14825388
seq2: B6Ng01-336M20.g_68_442 (reverse)

seq1  AAATTTGTGGATGAAAATTAGAGAGACATAGACATTTAGTACAAGTGAAA  50
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  AAATTTGAGGATGAAAATTAGAGAGACATAGACAATTAGTACAAGTGAAA  50

seq1  ATGTTTTTTTTTTCTAATTTTTTATTAGATATTTTCTTCATTTACATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTTTTTTTCTAATTTTTTATTAGATATTTTCTTCATTTACATTTC  100

seq1  AAATGCTATCCCAAAAGTCCCCTATACCCTCCCCACCACCGCCTTGCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTATCCCAAAAGTCCCCTATACCCTCCCCACCACCGCCTTGCTCT  150

seq1  CCTACCCACCCAATCCCATTTCTTGGCCCTAGCATTCCCCTGTACTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCACCCAATCCCATTTCTTGGCCCTAGCATTCCCCTGTACTGGGG  200

seq1  CATACAAAGTTTGCTAGACCAGTGAAAATGTTTTTAGGAAGGACTGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAGTTTGCTAGACCAGTGAAAATGTTTTTAGGAAGGACTGCATT  250

seq1  CATGAAAAGAATAACTCTGTTAGGAGTTTCATTTTGGCTTACTCTCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAGAATAACTCTGTTAGGAGTTTCATTTTGGCTTACTCTCCTAA  300

seq1  GCAAGTTATTCCTCTGGGCATGCTCTTGTCACTCACCCACTAGTTTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTATTCCTCTGGGCATGCTCTTGTCACTCACCCACTAGTTTGCCT  350

seq1  CTCCCTTTCTGGAAGTTCTGAATTC  375
      |||||||||||||||||||||||||
seq2  CTCCCTTTCTGGAAGTTCTGAATTC  375


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