BAC Information

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BAC

Clone NameB6Ng01-336N04
Chromosome10 (Build37)
Map Location 73,162,201 - 73,163,286
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream genePcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336N04.bB6Ng01-336N04.g
ACCGA121633GA121634
length1,0881,073
definitionB6Ng01-336N04.b B6Ng01-336N04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagctttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatctctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttctttcttgttccacttggttgatttcacccctgagtttgattat
ttcctgccatctactcctcttgggtgaatttgcttcctttttttctaggg
cttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttcttc
ttgagcactcagcgctatgagtttcctcttagaatgcttcattgtgtccc
atagtttgggtacgttgtgctcatttcataaactcaaaagtcttaattct
tcgtgaatccttccttgacaaggtatcattaataaaag

gaattctctgagcttaaatttaagtgcattaatgaacaggagtctatata
ggtacatactaaataagagagaatggagaatttcaattcttggcttgttt
gagaagtacacaagacaatacatgcagaatatatagaatattttccacac
ctttaattatcagagataatctccctccagcatttccttgtcagcttacc
agaaaaataactcagaacagaactggaaagggtaaaaaacatttttggca
atgcacaagattattaagaatattgttttatgaagtaaggaatgctgaat
gataaagatagtatgcatcctttggtataggacggctggctgcaagtact
tattgatcattggttctatgtggagtcttatgtgattaggaaacattgag
ggaaagtcacaatcctgtgatcaggtctgtgaagaaagcagcagactcta
ggtcctatcatcaacaagcctttagtaagtagactcgtctttgtctcctg
agggttttacatcccaaagtgcaggtacttgccctgaatactcagtgtcc
tcagagcctgggatacctcctgcaaattagaaagaagcaaaaaaaaaaaa
taataataataataataaataaataatggatgtagcaataaaatggccac
acacctagtggctctgcatggcaccttgtaacctttcatttccttctatt
gacaggtatatcagctctcttcattcctttctcgtggcaaaggtcaccag
gaataggatagaggtgtttcttttccataggtgtgcatttgtgcattgca
gggctcagctacactattgtaattcagatgtatgttttctctaaggaaaa
ttggatgctattaccaagcatgaaagccttgataatagaacttgagaata
atgaatgtataatatatcatgtatattacaggcatgcttccaagcagagg
catcttcgagttttagagcaaacttctatgccttttatttctttgggtct
tcaaaatatatagagcaaagtataacacgagcactctctcgctgcatata
tgatccctcagacacttggcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73162201_73163286
seq2: B6Ng01-336N04.g_68_1140 (reverse)

seq1  AATGCCAAAGTGTCTGAGGGGATTCATATTATGCAGCGAGAGAGTTGCTC  50
      |||||| |||||||||||||   ||||| ||||||||||||||| |||||
seq2  AATGCC-AAGTGTCTGAGGG--ATCATA-TATGCAGCGAGAGAG-TGCTC  45

seq1  TGTTGTTTATACTTTGCTCTATATATTTTGAAGACCCAAAGAAAATTAAA  100
       ||   ||||||||||||||||||||||||||||||||||||||  ||||
seq2  -GT--GTTATACTTTGCTCTATATATTTTGAAGACCCAAAGAAA--TAAA  90

seq1  AGGCATAGAAGTTTTGCTTCTAAAACTCGAAGATGCCTCTGCTTGGAAGC  150
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  AGGCATAGAAG-TTTGC-TCTAAAACTCGAAGATGCCTCTGCTTGGAAGC  138

seq1  ATGCCTGTAATATACATGATATATTATACATTCATTATTCTCAAGTTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTAATATACATGATATATTATACATTCATTATTCTCAAGTTCTA  188

seq1  TTATCAAGGCTTTCATGCTTGGTAATAGCATCCAATTTTCCTTAGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAGGCTTTCATGCTTGGTAATAGCATCCAATTTTCCTTAGAGAAA  238

seq1  ACATACATCTGAATTACAATAGTGTAGCCTGAGCCCTGCAATGCACAAAT  300
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACATACATCTGAATTACAATAGTGTAG-CTGAGCCCTGCAATGCACAAAT  287

seq1  GCACACCTATGGAAAAGAAACACCTCTATCCTATTCCTGGTGACCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCTATGGAAAAGAAACACCTCTATCCTATTCCTGGTGACCTTTGC  337

seq1  CACGAGAAAGGAATGAAGAGAGCTGATATACCTGTCAATAGAAGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGAAAGGAATGAAGAGAGCTGATATACCTGTCAATAGAAGGAAATG  387

seq1  AAAGGTTACAAGGTGCCATGCAGAGCCACTAGGTGTGTGGCCATTTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTACAAGGTGCCATGCAGAGCCACTAGGTGTGTGGCCATTTTATT  437

seq1  GCTACATCCATTATTTATTTATTATTATTATTATTATTTTTTTTTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCCATTATTTATTTATTATTATTATTATTATTTTTTTTTTTTGC  487

seq1  TTCTTTCTAATTTGCAGGAGGTATCCCAGGCTCTGAGGACACTGAGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTAATTTGCAGGAGGTATCCCAGGCTCTGAGGACACTGAGTATT  537

seq1  CAGGGCAAGTACCTGCACTTTGGGATGTAAAACCCTCAGGAGACAAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAGTACCTGCACTTTGGGATGTAAAACCCTCAGGAGACAAAGAC  587

seq1  GAGTCTACTTACTAAAGGCTTGTTGATGATAGGACCTAGAGTCTGCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTACTTACTAAAGGCTTGTTGATGATAGGACCTAGAGTCTGCTGCT  637

seq1  TTCTTCACAGACCTGATCACAGGATTGTGACTTTCCCTCAATGTTTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACAGACCTGATCACAGGATTGTGACTTTCCCTCAATGTTTCCTA  687

seq1  ATCACATAAGACTCCACATAGAACCAATGATCAATAAGTACTTGCAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAAGACTCCACATAGAACCAATGATCAATAAGTACTTGCAGCCA  737

seq1  GCCGTCCTATACCAAAGGATGCATACTATCTTTATCATTCAGCATTCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTCCTATACCAAAGGATGCATACTATCTTTATCATTCAGCATTCCTT  787

seq1  ACTTCATAAAACAATATTCTTAATAATCTTGTGCATTGCCAAAAATGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAAAACAATATTCTTAATAATCTTGTGCATTGCCAAAAATGTTT  837

seq1  TTTACCCTTTCCAGTTCTGTTCTGAGTTATTTTTCTGGTAAGCTGACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCTTTCCAGTTCTGTTCTGAGTTATTTTTCTGGTAAGCTGACAAG  887

seq1  GAAATGCTGGAGGGAGATTATCTCTGATAATTAAAGGTGTGGAAAATATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTGGAGGGAGATTATCTCTGATAATTAAAGGTGTGGAAAATATT  937

seq1  CTATATATTCTGCATGTATTGTCTTGTGTACTTCTCAAACAAGCCAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATTCTGCATGTATTGTCTTGTGTACTTCTCAAACAAGCCAAGAA  987

seq1  TTGAAATTCTCCATTCTCTCTTATTTAGTATGTACCTATATAGACTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTCTCCATTCTCTCTTATTTAGTATGTACCTATATAGACTCCTG  1037

seq1  TTCATTAATGCACTTAAATTTAAGCTCAGAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATGCACTTAAATTTAAGCTCAGAGAATTC  1073


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