BAC Information

Click to search

BAC

Clone NameB6Ng01-337J05
Chromosome10 (Build37)
Map Location 100,706,613 - 100,845,049
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337J05.bB6Ng01-337J05.g
ACCGA122156GA122157
length1,1861,126
definitionB6Ng01-337J05.b B6Ng01-337J05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,706,613 - 100,707,808)(100,843,919 - 100,845,049)
sequence
gaattcagctttagaaacaaaattacagtttcttagtgccattcactcac
agatctcacgttcaaacaattctttgttcaggggtttctctctgcctagg
attctctttttacctggatttctatattcatggtctcttgcacctttttt
ctttcaggatcatctcaaaggttacctttgtttatttttaatttttaaaa
atttaatgaatgaatgaatgaatgaatgaatgagtttttctcgactacag
tagatctctgctacatttttgcctactcaacttacaagagtgtttgatgc
tacaacagtacttgatcctactatagttaatttctctctcttcacaatcc
cagaaagtattagctattcttgtgaaaatgtacttaaatggtaaatattg
ttttcctgttagtgattgtggttctttttttttttttttttctcttgcca
tactgagaattgaaccaagggtcttgcccatcataggcgagcatgtgtcc
cttaatcacatacctaatgacagtctgtagaatttttgagaacacaaatg
agtcataactgctaattatatccctaggatcttatgatgccacccaattg
tccacaaagggccagatcaatctgtatgcaatattttatttcttttccca
agttaataatctacaatgaatagtatactcaattacttatgaacactaca
tatatggaacaatacattcattcatttccaacaacagtaggaaacagaac
attgtacataaactgagctaatccacagcaaagcataactgtgcttagga
atatcatgggactccgtgccttttagctcttgttggtgcaaatatggagt
agttgcttatctccatctataatcctgattaagtaatgttatcttcttta
catataatataacatgggacaggcactatttgtccatttttgatagattt
ctaataaaacaatattcaaaattttgcacaatatacataaacgagttgta
ttgtcactactgaatcatttttgggtcccagatataaaagtttcaagata
atgctatatattcccacactagttgtttgagtacatttacttccttaaag
tacagtattctcatctgaccctcgaattcataatcgaagctatggatttt
cacctatgaagccttattttggaaaggaccttaaga
gaattcatctgcctagagtcataaaacaaattaaatttatccaataaaat
tctagatgaagttcaaaatgatgcaaaataaatatgcatattatgtcaag
gctatattaattgcatgcaatacagacagcattatttaaaaggaacacaa
aagatttttttaattaaaaatcgtattagagtaattttaaataacatgaa
atgtcaaggaatagtaaggaaatatgctttgtgactttcaatttgtggtg
tcagtttgtgacataaaaaactctcacaggcatctaaacattttcattca
gcttttttgttttatttattatattgtgtacatgtttatcaagttctgca
atttgttatcttttcagaaccatgtcttttttgaaccagtatacagaaaa
attcaattttttatataccaggtattttttaaagtaaaatttacatgaag
tattttatacttctgttctaagaaaaaatacatatgttttaatttttttc
tccagtgacattaaaaaatgaacagatttaaatttcaaaacataaacact
agagacccctgaagtactgcacacttgacctctttattttatttcattca
gtgtagtgtgtctatcaactagttcttctctacttgttagtgagaccaac
aaacaggaagttatgtgtcagaaacaaaatgttgagagagagagagctca
acaaatttccaacaaacatgaacttatgtgtcagaaacaagttaagaggt
tgagaaagagagctcaatggatcatgtactcaatttatttctggttatag
acattcccagatttctctctgcttatcttgaaaagaaaaaagaaaaatag
aaaagggggttgaagggaaccacttgggaacatttcctgagaaagtattt
tccatgaaaaagactctcattctgaaatatccatgtaaagtgagtgttct
aacacagctgattaagttacactgtttatggtgtatctaaatatgggtag
tgtctgaaagacaatgctccctcacatgctgtagtatttgcaatatatac
caacactgatgattgttagggaggttttaaaaatgtggtctagcttgaga
aggtgcgtcgtatgggtgtgagtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100706613_100707808
seq2: B6Ng01-337J05.b_46_1231

seq1  GAATTCAGCTTTAGAAACAAAATTACAGTTTCTTAGTGCCATTCACTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTTAGAAACAAAATTACAGTTTCTTAGTGCCATTCACTCAC  50

seq1  AGATCTCACGTTCAAACAATTCTTTGTTCAGGGGTTTCTCTCTGCCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCACGTTCAAACAATTCTTTGTTCAGGGGTTTCTCTCTGCCTAGG  100

seq1  ATTCTCTTTTTACCTGGATTTCTATATTCATGGTCTCTTGCACCTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTTTTACCTGGATTTCTATATTCATGGTCTCTTGCACCTTTTTT  150

seq1  CTTTCAGGATCATCTCAAAGGTTACCTTTGTTTATTTTTAATTTTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGATCATCTCAAAGGTTACCTTTGTTTATTTTTAATTTTTAAAA  200

seq1  ATTTAATGAATGAATGAATGAATGAATGAATGAGTTTTTCTCGACTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATGAATGAATGAATGAATGAATGAATGAGTTTTTCTCGACTACAG  250

seq1  TAGATCTCTGCTACATTTTTGCCTACTCAACTTACAAGAGTGTTTGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTCTGCTACATTTTTGCCTACTCAACTTACAAGAGTGTTTGATGC  300

seq1  TACAACAGTACTTGATCCTACTATAGTTAATTTCTCTCTCTTCACAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGTACTTGATCCTACTATAGTTAATTTCTCTCTCTTCACAATCC  350

seq1  CAGAAAGTATTAGCTATTCTTGTGAAAATGTACTTAAATGGTAAATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTATTAGCTATTCTTGTGAAAATGTACTTAAATGGTAAATATTG  400

seq1  TTTTCCTGTTAGTGATTGTGGTTCTTTTTTTTTTTTTTTTTCTCTTGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTTAGTGATTGTGGTTCTTTTTTTTTTTTTTTTTCTCTTGCCA  450

seq1  TACTGAGAATTGAACCAAGGGTCTTGCCCATCATAGGCGAGCATGTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGAATTGAACCAAGGGTCTTGCCCATCATAGGCGAGCATGTGTCC  500

seq1  CTTAATCACATACCTAATGACAGTCTGTAGAATTTTTGAGAACACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCACATACCTAATGACAGTCTGTAGAATTTTTGAGAACACAAATG  550

seq1  AGTCATAACTGCTAATTATATCCCTAGGATCTTATGATGCCACCCAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAACTGCTAATTATATCCCTAGGATCTTATGATGCCACCCAATTG  600

seq1  TCCACAAAGGGCCAGATCAATCTGTATGCAATATTTTATTTCTTTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGGGCCAGATCAATCTGTATGCAATATTTTATTTCTTTTCCCA  650

seq1  AGTTAATAATCTACAATGAATAGTATACTCAATTACTTATGAACACTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAATCTACAATGAATAGTATACTCAATTACTTATGAACACTACA  700

seq1  TATATGGAACAATACATTCATTCATTTCCAACAACAGTAGGAAACAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAACAATACATTCATTCATTTCCAACAACAGTAGGAAACAGAAC  750

seq1  ATTGTACATAAACTGAGCTAATCCACAGCAAAGCATAACTGTGCTTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACATAAACTGAGCTAATCCACAGCAAAGCATAACTGTGCTTAGGA  800

seq1  ATATCATGGGACTCCGTGCCTTTTAGCTCTTGTTGGTGCAAATATGGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGGGACTCCGTGCCTTTTAGCTCTTGTTGGTGCAAATATGGAGT  850

seq1  AGTTGCTTATCTCCATCTATAATCCTGATTAAGTAATGTTATCTTCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTATCTCCATCTATAATCCTGATTAAGTAATGTTATCTTCTTTA  900

seq1  CATATAATATAACAT-GGACAGGCACTATTTTGTCCATTTTTGATAGATT  949
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  CATATAATATAACATGGGACAGGCACTA-TTTGTCCATTTTTGATAGATT  949

seq1  TCTAATAAA--CATATTCAAAATTTTTGCAC-ATATACATAAACGAGTTG  996
      |||||||||   |||||||||| |||||||| ||||||||||||||||||
seq2  TCTAATAAAACAATATTCAAAA-TTTTGCACAATATACATAAACGAGTTG  998

seq1  TATTGTCACTACTGAAATCATTTTTGGTCCCAAGATATTAAAAGTTTCAA  1046
      |||||||||||||| ||||||||||||  || ||||| |||||||||| |
seq2  TATTGTCACTACTG-AATCATTTTTGGGTCCCAGATA-TAAAAGTTTC-A  1045

seq1  AGATAATGCTATAATATTCCCACACTAGTTGTTTGAGTACATTTTACCTT  1096
      |||||||||||| |||||||||||||||||||||||||||||||   |||
seq2  AGATAATGCTAT-ATATTCCCACACTAGTTGTTTGAGTACATTT--ACTT  1092

seq1  CCCTAAAGTACAGTATTCTCAATCTGACACTTCAGATTCATAAATCGGAA  1146
      || ||||||||||||||||| ||||||| | ||  |||||| |||||   
seq2  CCTTAAAGTACAGTATTCTC-ATCTGAC-CCTCGAATTCAT-AATCG---  1136

seq1  AACTTATGATTTTTAAACTATGAAAGCTTTATTTTGGAAAGGACC-TAAG  1195
      ||  ||||  |||| | ||||| |||| ||||||||||||||||| ||||
seq2  AAGCTATGGATTTTCACCTATG-AAGCCTTATTTTGGAAAGGACCTTAAG  1185

seq1  A  1196
      |
seq2  A  1186

seq1: chr10_100843919_100845049
seq2: B6Ng01-337J05.g_65_1190 (reverse)

seq1  TCCACTCACACCTTTACGACGCACTTCCTCCAGCTAGACCACATTTTTTA  50
      ||||||||||||  |||||||||| | ||| |||||||||||| ||||||
seq2  TCCACTCACACCCATACGACGCACCTTCTCAAGCTAGACCACA-TTTTTA  49

seq1  AAACCTCCCTAAACAATTCCATCAAGTGTTGGTAATATA-TGCAAATACT  99
      |||||||||| ||||||  |||| ||||||||| ||||| ||||||||||
seq2  AAACCTCCCT-AACAAT--CATC-AGTGTTGGT-ATATATTGCAAATACT  94

seq1  ACAGCATGTGA-GGAGCATTGTCTTTCAAGACACTACCCATATTTAAGAT  148
      ||||||||||| ||||||||||||||| ||||||||||||||||| ||||
seq2  ACAGCATGTGAGGGAGCATTGTCTTTC-AGACACTACCCATATTT-AGAT  142

seq1  ACACCATAAACAGTGTAACTTAATCAGCTGTGTTAGAACACTCACTTTAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATAAACAGTGTAACTTAATCAGCTGTGTTAGAACACTCACTTTAC  192

seq1  ATGGATATTTCAGAATGAGAGTCTTTTTCATGGAAAATACTTTCTCAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATATTTCAGAATGAGAGTCTTTTTCATGGAAAATACTTTCTCAGGA  242

seq1  AATGTT-CCAAGTGGTTCCCTTCAACCCCCTTTTCTATTTTTCTTTTTTC  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCCAAGTGGTTCCCTTCAACCCCCTTTTCTATTTTTCTTTTTTC  292

seq1  TTTTCAAGATAAGCAGAGAGAAATCTGGGAATGTCTATAACCAGAAATAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGATAAGCAGAGAGAAATCTGGGAATGTCTATAACCAGAAATAA  342

seq1  ATTGAGTACATGATCCATTGAGCTCTCTTTCTCAACCTCTTAACTTGTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTACATGATCCATTGAGCTCTCTTTCTCAACCTCTTAACTTGTTT  392

seq1  CTGACACATAAGTTCATGTTTGTTGGAAATTTGTTGAGCTCTCTCTCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACATAAGTTCATGTTTGTTGGAAATTTGTTGAGCTCTCTCTCTCT  442

seq1  CAACATTTTGTTTCTGACACATAACTTCCTGTTTGTTGGTCTCACTAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTTTGTTTCTGACACATAACTTCCTGTTTGTTGGTCTCACTAACA  492

seq1  AGTAGAGAAGAACTAGTTGATAGACACACTACACTGAATGAAATAAAATA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGAAGAACTAGTTGATAGACACACTACACTGAATGAAATAAAATA  542

seq1  AAGAGGTCAAGTGTGCAGTACTTCAGGGGTCTCTAGTGTTTATGTTTTGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTCAAGTGTGCAGTACTTCAGGGGTCTCTAGTGTTTATGTTTTGA  592

seq1  AATTTAAATCTGTTCATTTTTTAATGTCACTGGAGAAAAAAATTAAAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATCTGTTCATTTTTTAATGTCACTGGAGAAAAAAATTAAAACA  642

seq1  TATGTATTTTTTCTTAGAACAGAAGTATAAAATACTTCATGTAAATTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTTTTCTTAGAACAGAAGTATAAAATACTTCATGTAAATTTTA  692

seq1  CTTTAAAAAATACCTGGTATATAAAAAATTGAATTTTTCTGTATACTGGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAATACCTGGTATATAAAAAATTGAATTTTTCTGTATACTGGT  742

seq1  TCAAAAAAGACATGGTTCTGAAAAGATAACAAATTGCAGAACTTGATAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAGACATGGTTCTGAAAAGATAACAAATTGCAGAACTTGATAAA  792

seq1  CATGTACACAATATAATAAATAAAACAAAAAAGCTGAATGAAAATGTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACACAATATAATAAATAAAACAAAAAAGCTGAATGAAAATGTTTA  842

seq1  GATGCCTGTGAGAGTTTTTTATGTCACAAACTGACACCACAAATTGAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGTGAGAGTTTTTTATGTCACAAACTGACACCACAAATTGAAAG  892

seq1  TCACAAAGCATATTTCCTTACTATTCCTTGACATTTCATGTTATTTAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAGCATATTTCCTTACTATTCCTTGACATTTCATGTTATTTAAAA  942

seq1  TTACTCTAATACGATTTTTAATTAAAAAAATCTTTTGTGTTCCTTTTAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTAATACGATTTTTAATTAAAAAAATCTTTTGTGTTCCTTTTAAA  992

seq1  TAATGCTGTCTGTATTGCATGCAATTAATATAGCCTTGACATAATATGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTGTCTGTATTGCATGCAATTAATATAGCCTTGACATAATATGCA  1042

seq1  TATTTATTTTGCATCATTTTGAACTTCATCTAGAATTTTATTGGATAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTGCATCATTTTGAACTTCATCTAGAATTTTATTGGATAAAT  1092

seq1  TTAATTTGTTTTATGACTCTAGGCAGATGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  TTAATTTGTTTTATGACTCTAGGCAGATGAATTC  1126