BAC Information

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BAC

Clone NameB6Ng01-338E03
Chromosome10 (Build37)
Map Location 100,382,725 - 100,518,772
singlet/doubletdoublet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338E03.bB6Ng01-338E03.g
ACCGA122622GA122623
length1,111322
definitionB6Ng01-338E03.b B6Ng01-338E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,382,725 - 100,383,835)(100,518,445 - 100,518,772)
sequence
gaattcacctaggcacactgctacctggtccctgctcacctcagtgttgg
catcgtgttgactaatgtgaagttttctatgagagtcaaacttcatcttc
ttcctaactggggacatatctccacaaatttcttcatacacgcttaagtc
agttaataacttctattatcaatagttatgttaattttgtcattggtgct
aaagcttttgccctttttttttttggttgttttttcttttttgttgttgt
tttggttttttgttttgtttttaaagccaaactaagaaccaatgtatttg
tgtcttgcaagacaggcataaacttctcttggtctgacgttcatatcgat
agcctccttctgaataagtaacatcctggagtagcagcagacaatcaaaa
taaatacagcatttaattaagataatttatctgggtcaaagattaggcaa
actgcagcatggtggtcaaatatgccttgtcctgttatgtaaagctgttt
tgattatgatcatgcacagtcattttcactcagtcctgaaggtttgtagt
tgtgacacagcttgtgtggtccttaaagcctaaaatgtttactatctcat
cactgatataaaatatttattacaattggcaaatcaacttacaaaacatg
aaattttaaaaaatcaactatcatttaacatcatatcgtgtatgattcca
tgaactaaattttctcttcaaacaatgagttgaaacctaataagcataat
gaacatagcttaataagtttaataaactaattttgattagtcctacagtg
tgacattatatccactggaaaaaaattcgtgatacgtagacagaaaacaa
tgaattgcatgaagaaaaatgtggatgcaaatgctaggcatatcaagtaa
gccaaacagagtttctcagtgaggggtatgttttatgttggttcctatga
ggtagaaatacaatattaattgtggacatctttttgtgtgtgtgtaggaa
cagaaaacacccattgttggttaaataattaggcaagaggaaacactgat
cacatgatggccactaagcaggattttattcaagttcaaatcatttgaca
gtctcttccag
ttatttcttatgtgtcaggggactcaatgtcatgtaatggacatttcatt
gacttgcacacacacaaataatatatgtatgtgtgtgtgtgtgtgtgtgt
atatatatatatatatacatatatatatatatatatatatatatatacac
ccacacacatatatctatataggtatataaatatataaattataaataga
ttcacagatacacagatatacagataacatatagatgatatagagataga
tagagtgatatatagatattagacttagagatacagaatgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100382725_100383835
seq2: B6Ng01-338E03.b_48_1158

seq1  GAATTCACCTAGGCACACTGCTACCTGGTCCCTGCTCACCTCAGTGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGGCACACTGCTACCTGGTCCCTGCTCACCTCAGTGTTGG  50

seq1  CATCGTGTTGACTAATGTGAAGTTTTCTATGAGAGTCAAACTTCATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGTTGACTAATGTGAAGTTTTCTATGAGAGTCAAACTTCATCTTC  100

seq1  TTCCTAACTGGGGACATATCTCCACAAATTTCTTCATACACGCTTAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAACTGGGGACATATCTCCACAAATTTCTTCATACACGCTTAAGTC  150

seq1  AGTTAATAACTTCTATTATCAATAGTTATGTTAATTTTGTCATTGGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATAACTTCTATTATCAATAGTTATGTTAATTTTGTCATTGGTGCT  200

seq1  AAAGCTTTTGCCCTTTTTTTTTTTGGTTGTTTTTTCTTTTTTGTTGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTGCCCTTTTTTTTTTTGGTTGTTTTTTCTTTTTTGTTGTTGT  250

seq1  TTTGGTTTTTTGTTTTGTTTTTAAAGCCAAACTAAGAACCAATGTATTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTTGTTTTGTTTTTAAAGCCAAACTAAGAACCAATGTATTTG  300

seq1  TGTCTTGCAAGACAGGCATAAACTTCTCTTGGTCTGACGTTCATATCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCAAGACAGGCATAAACTTCTCTTGGTCTGACGTTCATATCGAT  350

seq1  AGCCTCCTTCTGAATAAGTAACATCCTGGAGTAGCAGCAGACAATCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTCTGAATAAGTAACATCCTGGAGTAGCAGCAGACAATCAAAA  400

seq1  TAAATACAGCATTTAATTAAGATAATTTATCTGGGTCAAAGATTAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACAGCATTTAATTAAGATAATTTATCTGGGTCAAAGATTAGGCAA  450

seq1  ACTGCAGCATGGTGGTCAAATATGCCTTGTCCTGTTATGTAAAGCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGCATGGTGGTCAAATATGCCTTGTCCTGTTATGTAAAGCTGTTT  500

seq1  TGATTATGATCATGCACAGTCATTTTCACTCAGTCCTGAAGGTTTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATGATCATGCACAGTCATTTTCACTCAGTCCTGAAGGTTTGTAGT  550

seq1  TGTGACACAGCTTGTGTGGTCCTTAAAGCCTAAAATGTTTACTATCTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACAGCTTGTGTGGTCCTTAAAGCCTAAAATGTTTACTATCTCAT  600

seq1  CACTGATATAAAATATTTATTACAATTGGCAAATCAACTTACAAAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATATAAAATATTTATTACAATTGGCAAATCAACTTACAAAACATG  650

seq1  AAATTTTAAAAAATCAACTATCATTTAACATCATATCGTGTATGATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAAAAATCAACTATCATTTAACATCATATCGTGTATGATTCCA  700

seq1  TGAACTAAATTTTCTCTTCAAACAATGAGTTGAAACCTAATAAGCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAATTTTCTCTTCAAACAATGAGTTGAAACCTAATAAGCATAAT  750

seq1  GAACATAGCTTAATAAGTTTAATAAACTAATTTTGATTAGTCCTACAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGCTTAATAAGTTTAATAAACTAATTTTGATTAGTCCTACAGTG  800

seq1  TGACATTATATCCACTGGAAAAAAATTCGTGATACGTAGACAGAAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTATATCCACTGGAAAAAAATTCGTGATACGTAGACAGAAAACAA  850

seq1  TGAATTGCATGAAGAAAAATGTGGATGCAAATGCTAGGCATATCAAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCATGAAGAAAAATGTGGATGCAAATGCTAGGCATATCAAGTAA  900

seq1  GCCAAAACAGAGTTTCTCAGTGAGGGGTATGTTTTATGTTGGTTCCTATG  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCC-AAACAGAGTTTCTCAGTGAGGGGTATGTTTTATGTTGGTTCCTATG  949

seq1  AGGTAGAAATACAATATTAATTGTGGACATCTTTTTGTGTGTGTGTAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAATACAATATTAATTGTGGACATCTTTTTGTGTGTGTGTAGGA  999

seq1  ACAGAAAACA-CCATTGTTGGTAAAATAATTAGGCCAGAG--AACACTGA  1047
      |||||||||| ||||||||||| |||||||||||| ||||  ||||||||
seq2  ACAGAAAACACCCATTGTTGGTTAAATAATTAGGCAAGAGGAAACACTGA  1049

seq1  TCAACATGAT-GCCACTAAGCAGGATTTTATTCAAAGTTCAAATCATTTT  1096
      || ||||||| |||||||||||||||||||||| |||||||||||| |||
seq2  TC-ACATGATGGCCACTAAGCAGGATTTTATTC-AAGTTCAAATCA-TTT  1096

seq1  GACAGTCTCTTCCAG  1111
      |||||||||||||||
seq2  GACAGTCTCTTCCAG  1111

seq1: chr10_100518445_100518772
seq2: B6Ng01-338E03.g_68_395 (reverse)

seq1  CACACACACACACACACACACACACACACACACATTCTGTATCTCTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACATTCTGTATCTCTAAGT  50

seq1  CTAATATCTATATATCACTCTATCTATCTCTATATCATCTATATGTTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCTATATATCACTCTATCTATCTCTATATCATCTATATGTTATC  100

seq1  TGTATATCTGTGTATCTGTGAATCTATTTATAATTTATATATTTATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCTGTGTATCTGTGAATCTATTTATAATTTATATATTTATATAC  150

seq1  CTATATAGATATATCATCTTTGTTGTATATATATATATATATATATATAT  200
      ||||||||||||||     | | |||||||||||||||||||||||||||
seq2  CTATATAGATATATGTGTGTGGGTGTATATATATATATATATATATATAT  200

seq1  ATATGTATATATATATATATATACACACACACACACACACACATACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATATATATATATATATACACACACACACACACACACATACATAT  250

seq1  ATTATTTGTGTGTGTGCAAGTCAATGAAATGTCCATTACATGACATTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTGTGTGTGCAAGTCAATGAAATGTCCATTACATGACATTGAG  300

seq1  TCCCCTGACACATAAGAAATAAGAATTC  328
      ||||||||||||||||||||||||||||
seq2  TCCCCTGACACATAAGAAATAAGAATTC  328