BAC Information

Click to search

BAC

Clone NameB6Ng01-338H15
Chromosome10 (Build37)
Map Location 103,417,388 - 103,543,687
singlet/doubletdoublet
Overlap genenone
Upstream geneCart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292, LOC100042383
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338H15.bB6Ng01-338H15.g
ACCGA122769GA122770
length1,1961,054
definitionB6Ng01-338H15.b B6Ng01-338H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,542,462 - 103,543,687)(103,417,388 - 103,418,453)
sequence
gaattcataatggacatatacccctagtaaccaaatctgatttctctatg
ttatagaaactttaattatgaaacaaaacaagagtctgtagcctgaccta
ggcaatactttacgcacaactgcatttaaatgagtgttgaaaggtgtgtc
ttctcctgagtatgaagatcatttgaaatttgctttcagctatagttccc
tgaggagtctgggatgtggaaataaaactttctcaggtatttttataatt
caagcttattttccagggatgaaattatataatagatttctgtagactaa
ttgcttccagaaagttttacttagagtaatcaaacctaagcatccatttt
tgaaataacattaaaaactacactttcttattagttttctggcttctgtg
cttccagtattatgggaaccttgttataaggaatccatgtgaattctcaa
aggattcaaaatttccctttattttttattttttaaaaatatttttagga
ttaaaatataagtatgcatgtgtgagtcttcatgtatgatgatagtagct
aaaactgtttttagcaaacagtgtacagtatatagcatatatcatatgcc
agtttatagaaacaaacagatacaaatttaaaataatgaagacaatcttg
attttattgttttatactggaatcccagagatgagaaagtggtagagtaa
ggatcatttaggaatccagtttccttctgttgctacctctgtcatcctca
gttcttatcctttatatgaatatttttgctttaataccactattagtaat
tggaaagaaaggaagctcagcataaaatgagtgattatcttatacaaaaa
aaagaataagtgatttttttattggaattgtgaaaaatgttaacagcaaa
attcagtgctcctcacagaaatggacatctatagatggaagcaatatttt
ccttggcagaatgctaacccttagtgatcattaaatgcatgggcctaggg
aaaggacattctttgtaaagaaaacatagaaagtatgggaagaaatatgg
cattatttatgatattttaacataaatcatgaagaaacaaaatgttatta
aactatatttcttcatcatgttcatatgttgccaaaatacctgagcaaat
cagagatgaggactagacattaccttttgctatagccttctaaggc
gaattcactctggagatcaggttggcctcaagctcagaaatccacctccc
tctgcctcccaattgctgggatgaatgtcatgcaccacgactgcctggct
tagttaatttatttctaaagctggaacatatttgctgaattctcatatac
ttctgatgaaccatttttttttttttattgtcaggaccagattcttaggg
agttgtatttcctttctgtgagttgatgtaggaatgatgaaaaagaaaca
ataacaaaaatacacagggaatgagattttcaaatggaagtggcataaag
caaaacccaaatttccccacaatagctgtatgaggtctggtcactgtact
gaaatgagtgtggacaaaaggccagacaaggaagaatcatttaggaggaa
agaaataagccatacatctagtagtttgtaagctatataataaaaatcta
ttcattctatgggcattatttagtgaaactttcacctttgatttcaatgg
aaaagcttactgagagccagtcattccatccccaacaaaacaaaccaaaa
agaacaaatattaactaaaaactgttatagatgtagtggagaaataatga
agcatttaagctctgagaatctcgtgaagtttcaatgaacatctgctgag
attagaaagaggcaattgactcataaccagacttctttcctggcaccaac
tggcagtaggaaacaaaggatggcagaaagagttactatctctcaaaaaa
aaaaaaaaaaaaaaagaaagaaaaagaaaagacgattaaaaaaacaaaac
aaacaaaacaaaaaaaaaaaaaaaaaccaaagaacttagaataactcact
gaaatagtccatgaacaggaaagtgcttggaagatgttgtcataatcatg
atcataatatgaatacaaatcaaagccaaatgcaatatctcaagaaatag
acaggatgtgggaaaaatacactcactggtgtggcaatatacagtgtaga
atccactttgaaaggtgtctaaaacgtactaattaattatgtctacacct
ttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103542462_103543687
seq2: B6Ng01-338H15.b_45_1240 (reverse)

seq1  GCCTTAGA--GCTATAGCAAAATGGTTAAAATATGTCTAAGTACCCTCAT  48
      ||||||||  |||||||||||| |||      |||||| |||  ||||||
seq2  GCCTTAGAAGGCTATAGCAAAA-GGT-----AATGTCT-AGT--CCTCAT  41

seq1  TCTTGAACTCTGCTCAAGTTATTTTGACAACATATGGAACATGATGAAAG  98
         |||  | ||||| || ||||||| |||||||| |||||||||| |||
seq2  CTCTGA--TTTGCTC-AGGTATTTTGGCAACATAT-GAACATGATG-AAG  86

seq1  AAATATAGTTTAAATAACATTTTTGTATCTTCAATGATTTATGTTAAAAA  148
      ||||||||||| ||||||| |||||| ||||| ||||||||||||  |||
seq2  AAATATAGTTT-AATAACA-TTTTGTTTCTTC-ATGATTTATGTT--AAA  131

seq1  ATATCATTAAAATAATTGCCCATTATTTCTTCCCATAACCTTTTCCTATG  198
      |||||||  |||||| ||||   ||||||||||||||  ||||  |||||
seq2  ATATCAT--AAATAA-TGCC--ATATTTCTTCCCATA--CTTT--CTATG  172

seq1  TTTTCTTTTACAAAGAATGTCCTTTCCCCTAGGCCCATGCATTTAATGAT  248
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTC-TTTACAAAGAATGTCCTTT-CCCTAGGCCCATGCATTTAATGAT  220

seq1  CAACTAAGGGTTAGCATTCTGCCAAGGAAAATATTGCTTCCATCTATAGA  298
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ACTAAGGGTTAGCATTCTGCCAAGGAAAATATTGCTTCCATCTATAGA  269

seq1  TGTCCATTTCTGTGAGGAGCACCTGAATTTTGCTGTTAACATTTTTCACA  348
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCCATTTCTGTGAGGAGCA-CTGAATTTTGCTGTTAACATTTTTCACA  318

seq1  ATTCCAATAAAAAAATCACTTATTCTTTTTTTTGTATAAGATAATCACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATAAAAAAATCACTTATTCTTTTTTTTGTATAAGATAATCACTC  368

seq1  ATTTTATGCTGAGCTTCCTTTCTTTCCAATTACTAATAGTGGTATTAAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCTGAGCTTCCTTTCTTTCCAATTACTAATAGTGGTATTAAAG  418

seq1  CAAAAATATTCATATAAAGGATAAGAACTGAGGATGACAGAGGTAGCAAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATATTCATATAAAGGATAAGAACTGAGGATGACAGAGGTAGCAAC  468

seq1  AGAAGGAAACTGGATTCCTAAATGATCCTTACTCTACCACTTTCTCATCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAACTGGATTCCTAAATGATCCTTACTCTACCACTTTCTCATCT  518

seq1  CTGGGATTCCAGTATAAAACAATAAAATCAAGATTGTCTTCATTATTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTCCAGTATAAAACAATAAAATCAAGATTGTCTTCATTATTTTA  568

seq1  AATTTGTATCTGTTTGTTTCTATAAACTGGCATATGATATATGCTATATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATCTGTTTGTTTCTATAAACTGGCATATGATATATGCTATATA  618

seq1  CTGTACACTGTTTGCTAAAAACAGTTTTAGCTACTATCATCATACATGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACTGTTTGCTAAAAACAGTTTTAGCTACTATCATCATACATGAA  668

seq1  GACTCACACATGCATACTTATATTTTAATCCTAAAAATATTTTTAAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCACACATGCATACTTATATTTTAATCCTAAAAATATTTTTAAAAAA  718

seq1  TAAAAAATAAAGGGAAATTTTGAATCCTTTGAGAATTCACATGGATTCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATAAAGGGAAATTTTGAATCCTTTGAGAATTCACATGGATTCCT  768

seq1  TATAACAAGGTTCCCATAATACTGGAAGCACAGAAGCCAGAAAACTAATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAGGTTCCCATAATACTGGAAGCACAGAAGCCAGAAAACTAATA  818

seq1  AGAAAGTGTAGTTTTTAATGTTATTTCAAAAATGGATGCTTAGGTTTGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGTAGTTTTTAATGTTATTTCAAAAATGGATGCTTAGGTTTGAT  868

seq1  TACTCTAAGTAAAACTTTCTGGAAGCAATTAGTCTACAGAAATCTATTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAAGTAAAACTTTCTGGAAGCAATTAGTCTACAGAAATCTATTAT  918

seq1  ATAATTTCATCCCTGGAAAATAAGCTTGAATTATAAAAATACCTGAGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCATCCCTGGAAAATAAGCTTGAATTATAAAAATACCTGAGAAA  968

seq1  GTTTTATTTCCACATCCCAGACTCCTCAGGGAACTATAGCTGAAAGCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTCCACATCCCAGACTCCTCAGGGAACTATAGCTGAAAGCAAA  1018

seq1  TTTCAAATGATCTTCATACTCAGGAGAAGACACACCTTTCAACACTCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGATCTTCATACTCAGGAGAAGACACACCTTTCAACACTCATT  1068

seq1  TAAATGCAGTTGTGCGTAAAGTATTGCCTAGGTCAGGCTACAGACTCTTG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCAGTTGTGCGTAAAGTATTGCCTAGGTCAGGCTACAGACTCTTG  1118

seq1  TTTTGTTTCATAATTAAAGTTTCTATAACATAGAGAAATCAGATTTGGTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCATAATTAAAGTTTCTATAACATAGAGAAATCAGATTTGGTT  1168

seq1  ACTAGGGGTATATGTCCATTATGAATTC  1226
      ||||||||||||||||||||||||||||
seq2  ACTAGGGGTATATGTCCATTATGAATTC  1196

seq1: chr10_103417388_103418453
seq2: B6Ng01-338H15.g_64_1117

seq1  GAATTCACTCTGGAGATCAGGTTGGCCTCAAGCTCAGAAATCCACCTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGGAGATCAGGTTGGCCTCAAGCTCAGAAATCCACCTCCC  50

seq1  TCTGCCTCCCAATTGCTGGGATGAATGTCATGCACCACGACTGCCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAATTGCTGGGATGAATGTCATGCACCACGACTGCCTGGCT  100

seq1  TAGTTAATTTATTTCTAAAGCTGGAACATATTTGCTGAATTCTCATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATTTATTTCTAAAGCTGGAACATATTTGCTGAATTCTCATATAC  150

seq1  TTCTGATGAACCATTTTTTTTTTTTTATTGTCAGGACCAGATTCTTAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGAACCATTTTTTTTTTTTTATTGTCAGGACCAGATTCTTAGGG  200

seq1  AGTTGTATTTCCTTTCTGTGAGTTGATGTAGGAATGATGAAAAAGAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTTCCTTTCTGTGAGTTGATGTAGGAATGATGAAAAAGAAACA  250

seq1  ATAACAAAAATACACAGGGAATGAGATTTTCAAATGGAAGTGGCATAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAAATACACAGGGAATGAGATTTTCAAATGGAAGTGGCATAAAG  300

seq1  CAAAACCCAAATTTCCCCACAATAGCTGTATGAGGTCTGGTCACTGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAAATTTCCCCACAATAGCTGTATGAGGTCTGGTCACTGTACT  350

seq1  GAAATGAGTGTGGACAAAAGGCCAGACAAGGAAGAATCATTTAGGAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGTGTGGACAAAAGGCCAGACAAGGAAGAATCATTTAGGAGGAA  400

seq1  AGAAATAAGCCATACATCTAGTAGTTTGTAAGCTATATAATAAAAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGCCATACATCTAGTAGTTTGTAAGCTATATAATAAAAATCTA  450

seq1  TTCATTCTATGGGCATTATTTAGTGAAACTTTCACCTTTGATTTCAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTATGGGCATTATTTAGTGAAACTTTCACCTTTGATTTCAATGG  500

seq1  AAAAGCTTACTGAGAGCCAGTCATTCCATCCCCAACAAAACAAACCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTACTGAGAGCCAGTCATTCCATCCCCAACAAAACAAACCAAAA  550

seq1  AGAACAAATATTAACTAAAAACTGTTATAGATGTAGTGGAGAAATAATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAATATTAACTAAAAACTGTTATAGATGTAGTGGAGAAATAATGA  600

seq1  AGCATTTAAGCTCTGAGAATCTCGTGAAGTTTCAATGAACATCTGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTAAGCTCTGAGAATCTCGTGAAGTTTCAATGAACATCTGCTGAG  650

seq1  ATTAGAAAGAGGCAATTGACTCATAACCAGACTTCTTTCCTGGCACCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAAGAGGCAATTGACTCATAACCAGACTTCTTTCCTGGCACCAAC  700

seq1  TGGCAGTAGGAAACAAAGGATGGCAGAAAGAGTTACTATCTCTCAAAAAA  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGGCAGTAGGAAACAAAGGATGGCAGAAAGAGTTACTATCTCTC-AAAAA  749

seq1  AAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAGACAGATTAAAAAAACAAA  800
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAGAC-GATTAAAAAAACAAA  798

seq1  ACAAAACAAAAC-AAAAAAAAAAAAAAAACCAAAGAACTTAG-ATAACTC  848
      || ||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  AC-AAACAAAACAAAAAAAAAAAAAAAAACCAAAGAACTTAGAATAACTC  847

seq1  ACTGAAATAGTCCATGAACAGGAAAGTGCTT-GAAGATGTTGTCATAATC  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACTGAAATAGTCCATGAACAGGAAAGTGCTTGGAAGATGTTGTCATAATC  897

seq1  ATGATTCATAATATGAATACAAATCAAAGCCAAATGCAATATCTCAAAGA  947
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATGA-TCATAATATGAATACAAATCAAAGCCAAATGCAATATCTC-AAGA  945

seq1  AAAAATAAAAACAAGATTGTGGG-AAAATACACTCACTTGGTTGTTGGCA  996
      |     | | ||| || |||||| ||||||||||||| ||||   |||||
seq2  A-----ATAGACAGGA-TGTGGGAAAAATACACTCAC-TGGT--GTGGCA  986

seq1  ATATACAGTGTTAGAAT-CACTTTGGAAAAGTGTCTAAAACGTACTTATA  1045
      |||||||||| |||||| |||||| |||| |||||||||||||||| || 
seq2  ATATACAGTG-TAGAATCCACTTT-GAAAGGTGTCTAAAACGTACTAAT-  1033

seq1  TAATTATGTCTACACCTTTCC  1066
      |||||||||||||||||||||
seq2  TAATTATGTCTACACCTTTCC  1054