BAC Information

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BAC

Clone NameB6Ng01-339J19
Chromosome10 (Build37)
Map Location 85,263,454 - 85,404,475
singlet/doubletdoublet
Overlap geneLOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e
Upstream geneRfx4, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723
Downstream geneBpil2, Fbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339J19.bB6Ng01-339J19.g
ACCGA123561GA123562
length1,056959
definitionB6Ng01-339J19.b B6Ng01-339J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,403,430 - 85,404,475)(85,263,454 - 85,264,161)
sequence
gaattccatccacagatatgatttgtttttgtcatgcccactcaccctct
ccctttctgttcctcctcttacaaatgtcccaccgctcactgtcccagag
gaggccatctctagcctactctggccttgaaacaatcctcaggctcctgt
attcgaggatcacaagtgtgagccaccactcctggctctgattttggttt
atctcattttattttatattgccctttgtttggagactaagtctattgcc
agctagatctatgttataatgtttgaaagtaggttgtaagggcctggttg
aaggagaaaacttactctttcaaattgtttccaacctccacatgtgcagt
gtgtatgtgccacgcacacacaatagaatttaatggggaaaaatgctttt
gtctttttgtggtttgttgttgttgttgttgttgttgttgttgctgttgt
tgtttgctttttaattgtgtatccctggctgtccaggaactccctctgta
gaccaggctaacctcaaactcggaaaattgcctgcctttccctcagcctc
ctgagtgctgggataaaggtgtgtgccaacacctcctgcaacggtcaaaa
cttagaataagtagaagtagtttaaggtgacccattgtaaccttgattct
gcacagttgcatgcttacatttcagtttaggacaaatttggaaaaggaga
gaagcaatttgggtttagttcacagaggaaaaattgtatttaaatgatct
gcatgtacttaagagaaacccagttatccgacccctccttcattttgaag
agcacttaggtttccctgatgctgttttgaaggtgtagttgtcaaatttt
ctttgtccttttaaaaaaggcagctccttctgaggttcctggtgtctcct
tcctcagtgcagcagatgaagcggcttggcttcttgctcacacagcttcc
cctggttgctgtaaacctgttgcctgtaaaggcatattcaattcttgacg
cttcattaactagaagtctcaagttagaatgactgggttcaagcttggcc
tttttt
gaattcttaaaatcagtataccgagtcttgaaagaatccaatccagaacc
tagaatgagagcagaaccagaattgctagaggagaaaattgcacaaaggc
ttgaaggatgaagatgacagcacatagagtctgaatattctcaataaaca
ttcagattccgatttattattaaattaattaaattatcaaagcaataaca
taaaagagaatatgtgtctcattgtgttgagtttgaaattttaaaatacg
tacatatgttgattcatcactcactggatacatattcagacttctaagaa
gcatcagacttgccttctaaaagggatggttctgaaactgcacatttatt
agagatgatggctatcttggaaatgcctttgcagactggagccgatgatt
ctttaacatgtgtgtccactataatgcactttgcccattagggcataaaa
aatgttatatgttaccaacttacaggtcaggcagttatagagagctctca
tgggagttcaaaggaaatgctcatagaacaaatgggggatctaagatctc
ccaaagagagtttaaatcaagctttattgacttgaatttttaaaatgcca
atgagacagataatacagctgctaaaaagccctagatcttagaaagcatt
gctgatttagataaacataaacatgtgctaacctcagaacagaaggcagt
aaatatgctgcataggggaacagaatatgatctttttcaaacgggaaaag
aaaaactgtggaatccttcaaaattaataaaacacagaggccactggaag
agacctcctgaagatctgtcctactgacaagaaaaaaaaatcatgaagac
caacaaaacgggtaacttgttttgctgatccctctacatgggaactgtac
tcaaactggctgagatgtgaaaaagtctctagctatgacttcaggaatgc
ccaacaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_85403430_85404475
seq2: B6Ng01-339J19.b_49_1104 (reverse)

seq1  AAAAAAAGCCAAGCTTG-ACCCAGTCATTCT-ACTTGAGACTTCTAGTT-  47
      |||||| |||||||||| ||||||||||||| ||||||||||||||||| 
seq2  AAAAAAGGCCAAGCTTGAACCCAGTCATTCTAACTTGAGACTTCTAGTTA  50

seq1  ATGAAGCGTCAAGAA-TGAATATGCCTTTACAG--CACA-GTTTACAGCA  93
      ||||||||||||||| |||||||||||||||||   ||| ||||||||||
seq2  ATGAAGCGTCAAGAATTGAATATGCCTTTACAGGCAACAGGTTTACAGCA  100

seq1  ACCAAGGGAAGCTGTGTGAGC-AGAAGCCAAGCCGC-TCATCTGCTGCAC  141
      |||| |||||||||||||||| |||||||||||||| |||||||||||||
seq2  ACCAGGGGAAGCTGTGTGAGCAAGAAGCCAAGCCGCTTCATCTGCTGCAC  150

seq1  TGAGGAAAGAGACACCAAGAACCTCAGAAGGAGCTGCC-TTTTTAAAAGG  190
      ||||||| ||||||||| |||||||||||||||||||| |||||||||||
seq2  TGAGGAAGGAGACACCAGGAACCTCAGAAGGAGCTGCCTTTTTTAAAAGG  200

seq1  ACAAAGAAAATTTGACAACTACACCTTCAAAACAGCATCAGGGAAACCTA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAAATTTGACAACTACACCTTCAAAACAGCATCAGGGAAACCTA  250

seq1  AGTGCTCTTCAAAATGAAGGAGGGGTCGGATAACTGGGTTTCTCTTAAGT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTCAAAATGAAGGAGGGGTCGGATAACTGGGTTTCTCTTAAGT  300

seq1  ACATGCAGATCATTTAAATACAATTTTTCCTCTGTGAACTAAACCCAAAT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGATCATTTAAATACAATTTTTCCTCTGTGAACTAAACCCAAAT  350

seq1  TGCTTCTCTCCTTTTCCAAATTTGTCCTAAACTGAAATGTAAGCATGCAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTCCTTTTCCAAATTTGTCCTAAACTGAAATGTAAGCATGCAA  400

seq1  CTGTGCAGAATCAAGGTTACAATGGGTCACCTTAAACTACTTCTACTTAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGAATCAAGGTTACAATGGGTCACCTTAAACTACTTCTACTTAT  450

seq1  TCTAAGTTTTGACCGTTGCAGGAGGTGTTGGCACACACCTTTATCCCAGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTTTGACCGTTGCAGGAGGTGTTGGCACACACCTTTATCCCAGC  500

seq1  ACTCAGGAGGCTGAGGGAAAGGCAGGCAATTTTCCGAGTTTGAGGTTAGC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGAGGCTGAGGGAAAGGCAGGCAATTTTCCGAGTTTGAGGTTAGC  550

seq1  CTGGTCTACAGAGGGAGTTCCTGGACAGCCAGGGATACACAATTAAAAAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTACAGAGGGAGTTCCTGGACAGCCAGGGATACACAATTAAAAAG  600

seq1  CAAACAACAACAGCAACAACAACAACAACAACAACAACAACAAACCACAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAACAGCAACAACAACAACAACAACAACAACAACAAACCACAA  650

seq1  AAAGACAAAAGCATTTTTCCCCATTAAATTCTATTGTGTGTGCGTGGCAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAAGCATTTTTCCCCATTAAATTCTATTGTGTGTGCGTGGCAC  700

seq1  ATACACACTGCACATGTGGAGGTTGGAAACAATTTGAAAGAGTAAGTTTT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACTGCACATGTGGAGGTTGGAAACAATTTGAAAGAGTAAGTTTT  750

seq1  CTCCTTCAACCAGGCCCTTACAACCTACTTTCAAACATTATAACATAGAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCAACCAGGCCCTTACAACCTACTTTCAAACATTATAACATAGAT  800

seq1  CTAGCTGGCAATAGACTTAGTCTCCAAACAAAGGGCAATATAAAATAAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGGCAATAGACTTAGTCTCCAAACAAAGGGCAATATAAAATAAAA  850

seq1  TGAGATAAACCAAAATCAGAGCCAGGAGTGGTGGCTCACACTTGTGATCC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAACCAAAATCAGAGCCAGGAGTGGTGGCTCACACTTGTGATCC  900

seq1  TCGAATACAGGAGCCTGAGGATTGTTTCAAGGCCAGAGTAGGCTAGAGAT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATACAGGAGCCTGAGGATTGTTTCAAGGCCAGAGTAGGCTAGAGAT  950

seq1  GGCCTCCTCTGGGACAGTGAGCGGTGGGACATTTGTAAGAGGAGGAACAG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCTCTGGGACAGTGAGCGGTGGGACATTTGTAAGAGGAGGAACAG  1000

seq1  AAAGGGAGAGGGTGAGTGGGCATGACAAAAACAAATCATATCTGTGGATG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAGGGTGAGTGGGCATGACAAAAACAAATCATATCTGTGGATG  1050

seq1  GAATTC  1046
      ||||||
seq2  GAATTC  1056

seq1: chr10_85263454_85264161
seq2: B6Ng01-339J19.g_66_773

seq1  GAATTCTTAAAATCAGTATACCGAGTCTTGAAAGAATCCAATCCAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAAATCAGTATACCGAGTCTTGAAAGAATCCAATCCAGAACC  50

seq1  TAGAATGAGAGCAGAACCAGAATTGCTAGAGGAGAAAATTGCACAAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGAGAGCAGAACCAGAATTGCTAGAGGAGAAAATTGCACAAAGGC  100

seq1  TTGAAGGATGAAGATGACAGCACATAGAGTCTGAATATTCTCAATAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGATGAAGATGACAGCACATAGAGTCTGAATATTCTCAATAAACA  150

seq1  TTCAGATTCCGATTTATTATTAAATTAATTAAATTATCAAAGCAATAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCCGATTTATTATTAAATTAATTAAATTATCAAAGCAATAACA  200

seq1  TAAAAGAGAATATGTGTCTCATTGTGTTGAGTTTGAAATTTTAAAATACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAATATGTGTCTCATTGTGTTGAGTTTGAAATTTTAAAATACG  250

seq1  TACATATGTTGATTCATCACTCACTGGATACATATTCAGACTTCTAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATGTTGATTCATCACTCACTGGATACATATTCAGACTTCTAAGAA  300

seq1  GCATCAGACTTGCCTTCTAAAAGGGATGGTTCTGAAACTGCACATTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGACTTGCCTTCTAAAAGGGATGGTTCTGAAACTGCACATTTATT  350

seq1  AGAGATGATGGCTATCTTGGAAATGCCTTTGCAGACTGGAGCCGATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGATGGCTATCTTGGAAATGCCTTTGCAGACTGGAGCCGATGATT  400

seq1  CTTTAACATGTGTGTCCACTATAATGCACTTTGCCCATTAGGGCATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACATGTGTGTCCACTATAATGCACTTTGCCCATTAGGGCATAAAA  450

seq1  AATGTTATATGTTACCAACTTACAGGTCAGGCAGTTATAGAGAGCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATATGTTACCAACTTACAGGTCAGGCAGTTATAGAGAGCTCTCA  500

seq1  TGGGAGTTCAAAGGAAATGCTCATAGAACAAATGGGGGATCTAAGATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTCAAAGGAAATGCTCATAGAACAAATGGGGGATCTAAGATCTC  550

seq1  CCAAAGAGAGTTTAAATCAAGCTTTATTGACTTGAATTTTTAAAATGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGAGTTTAAATCAAGCTTTATTGACTTGAATTTTTAAAATGCCA  600

seq1  ATGAGACAGATAATACAGCTGCTAAAAAGCCCTAGATCTTAGAAAGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGACAGATAATACAGCTGCTAAAAAGCCCTAGATCTTAGAAAGCATT  650

seq1  GCTGATTTAGATAAACATAAACATGTGCTAACCTCAGAACAGAAGGCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATTTAGATAAACATAAACATGTGCTAACCTCAGAACAGAAGGCAGT  700

seq1  AAATATGC  708
      ||||||||
seq2  AAATATGC  708