BAC Information

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BAC

Clone NameB6Ng01-339J21
Chromosome10 (Build37)
Map Location 19,628,315 - 19,629,419
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7
Downstream geneMap3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339J21.bB6Ng01-339J21.g
ACCGA123565GA123566
length1,1171,163
definitionB6Ng01-339J21.b B6Ng01-339J21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatacaaatgactttctctaactaaaaagttggaagccattgtgg
gatcaggagaagggtgaagaacccaggaaacctaaaaccgcaagggatgg
tagctgccaggactcagtctagcctgatagagaaagagcactttgggtag
attccacctggtgagagaaaatcaaatgctccaacatgaactcttgtatt
gtaccccatgcccaaggaactgtgctgcagcttaaataatagagatctgt
gcaagttttcagatatggatcatttagtgagttatcattcccaagcaaca
gtaactggaggctagagattggcaatggagtacagttagagactttagca
acaactcaagcagaagatgctatagttgggtaatagtgttttgttgagaa
ttatggaaaggtgtggagagggtacgcttaagggtcaaatgaagacaaaa
agcttaaatggtttccaactcttagtatagtacttatctagacacaggaa
ttgtttattgaaataaggacaatggagcattaataaactccagttctgca
tgttgactgtgtactgtgtgcagtacttgaatacagcacaatggagtcca
gccaagccttcttacttgcatgtagataatatttaaaccacggaaattat
ttttatttagcaagagaatggaatgagagaagacagataaaggcagattt
ggggcaaacagccacatggaaagctggcagtggagaagctatggaaggga
gagagatccacaagatggggactgtagactcatttattacttggggctgg
agagatggctcagtgggtaagagcaatgactgttcttccagaggccctga
gttcaattcccagcaaccacatggtggcttcacaaccatctgtaatgagg
actgatgcactcttctggtgtggtctgaacaacaggacagtgtactcaac
atatgttcacatcacataaaaataaatggtcctctaaaaaaatactgctc
aaggcctaggcatggtaatgaaatgccttttaacccagaattcgagacag
aggcaaggtatagattcttctgagttttgaagcagagctaagtctacaga
gtgctgttcctggggac
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggagagctagaggaagtactcaaggagctaaagggatcttcaccctat
aggtggaacaacattatgaaactaacagtacccctgagctcttgactcta
gctgcatatgtatcaaagaatggcctagtcgtcatcactgggaagagagg
tccaattggactgcagacttgtggtgcccgtacaggggaacgccagggtc
caaaagggtgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_19628315_19629419
seq2: B6Ng01-339J21.b_49_1165

seq1  GAATTCATACAAATGACTTTCTCTAACTAAAAAGTTGGAAGCCATTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAAATGACTTTCTCTAACTAAAAAGTTGGAAGCCATTGTGG  50

seq1  GATCAGGAGAAGGGTGAAGAACCCAGGAAACCTAAAACCGCAAGGGATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAGAAGGGTGAAGAACCCAGGAAACCTAAAACCGCAAGGGATGG  100

seq1  TAGCTGCCAGGACTCAGTCTAGCCTGATAGAGAAAGAGCACTTTGGGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCCAGGACTCAGTCTAGCCTGATAGAGAAAGAGCACTTTGGGTAG  150

seq1  ATTCCACCTGGTGAGAGAAAATCAAATGCTCCAACATGAACTCTTGTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCTGGTGAGAGAAAATCAAATGCTCCAACATGAACTCTTGTATT  200

seq1  GTACCCCATGCCCAAGGAACTGTGCTGCAGCTTAAATAATAGAGATCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCCCATGCCCAAGGAACTGTGCTGCAGCTTAAATAATAGAGATCTGT  250

seq1  GCAAGTTTTCAGATATGGATCATTTAGTGAGTTATCATTCCCAAGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTTCAGATATGGATCATTTAGTGAGTTATCATTCCCAAGCAACA  300

seq1  GTAACTGGAGGCTAGAGATTGGCAATGGAGTACAGTTAGAGACTTTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGGAGGCTAGAGATTGGCAATGGAGTACAGTTAGAGACTTTAGCA  350

seq1  ACAACTCAAGCAGAAGATGCTATAGTTGGGTAATAGTGTTTTGTTGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAAGCAGAAGATGCTATAGTTGGGTAATAGTGTTTTGTTGAGAA  400

seq1  TTATGGAAAGGTGTGGAGAGGGTACGCTTAAGGGTCAAATGAAGACAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAAAGGTGTGGAGAGGGTACGCTTAAGGGTCAAATGAAGACAAAA  450

seq1  AGCTTAAATGGTTTCCAACTCTTAGTATAGTACTTATCTAGACACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAATGGTTTCCAACTCTTAGTATAGTACTTATCTAGACACAGGAA  500

seq1  TTGTTTATTGAAATAAGGACAATGGAGCATTAATAAACTCCAGTTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATTGAAATAAGGACAATGGAGCATTAATAAACTCCAGTTCTGCA  550

seq1  TGTTGACTGTGTACTGTGTGCAGTACTTGAATACAGCACAATGGAGTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTGTGTACTGTGTGCAGTACTTGAATACAGCACAATGGAGTCCA  600

seq1  GCCAAGCCTTCTTACTTGCATGTAGATAATATTTAAACCACGGAAATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCCTTCTTACTTGCATGTAGATAATATTTAAACCACGGAAATTAT  650

seq1  TTTTATTTAGCAAGAGAATGGAATGAGAGAAGACAGATAAAGGCAGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAGCAAGAGAATGGAATGAGAGAAGACAGATAAAGGCAGATTT  700

seq1  GGGGCAAACAGCCACATGGAAAGCTGGCAGTGGAGAAGCTATGGAAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAACAGCCACATGGAAAGCTGGCAGTGGAGAAGCTATGGAAGGGA  750

seq1  GAGAGATCCACAAGATGGGGACTGTAGACTCATTTATTACTTGGGGCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCCACAAGATGGGGACTGTAGACTCATTTATTACTTGGGGCTGG  800

seq1  AGAGATGGCTCAGTGGGTAAGAGCAATGACTGTTCTTCCAGAGGCCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGCTCAGTGGGTAAGAGCAATGACTGTTCTTCCAGAGGCCCTGA  850

seq1  GTTCAATTCCCAGCAACCACATGGTGGC-TCACAACCATCTGTAATGAGG  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTTCAATTCCCAGCAACCACATGGTGGCTTCACAACCATCTGTAATGAGG  900

seq1  ACTGATGCACTCTTCTGGTGT-GTCTGAACACAGGGACAGTGTACTC-AC  947
      ||||||||||||||||||||| |||||||||   ||||||||||||| ||
seq2  ACTGATGCACTCTTCTGGTGTGGTCTGAACAACAGGACAGTGTACTCAAC  950

seq1  ATATGTTCACATCACAT-AAAATAAAT-GTCTCTTAAAAAAATACTGCTC  995
      ||||||||||||||||| ||||||||| |||   ||||||||||||||||
seq2  ATATGTTCACATCACATAAAAATAAATGGTCCTCTAAAAAAATACTGCTC  1000

seq1  AAG--CCAGGCATGGTAAATGAATGCCTTTAAACCCAGAATTTCGGAGAC  1043
      |||  | |||||||||||   ||||||||| |||||||||||   |||||
seq2  AAGGCCTAGGCATGGTAATGAAATGCCTTTTAACCCAGAATT--CGAGAC  1048

seq1  AGAGGCAGG---TAGAT--CTCTGAG-TTTGAAGC-CAGCCTAGTCTACA  1086
      ||||||| |   |||||   |||||| ||||||||  |||  ||||||||
seq2  AGAGGCAAGGTATAGATTCTTCTGAGTTTTGAAGCAGAGCTAAGTCTACA  1098

seq1  GAGTGGCTG-TCCTGGGGAC  1105
      |||| |||| ||||||||||
seq2  GAGT-GCTGTTCCTGGGGAC  1117