BAC Information

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BAC

Clone NameB6Ng01-339P06
Chromosome10 (Build37)
Map Location 66,197,182 - 66,361,089
singlet/doubletdoublet
Overlap genenone
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339P06.bB6Ng01-339P06.g
ACCGA123805GA123806
length1,1391,031
definitionB6Ng01-339P06.b B6Ng01-339P06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,359,944 - 66,361,089)(66,197,182 - 66,198,204)
sequence
gaattccattccgctcctttcaaataaagccaatctcgtcaatttcgttc
tttctttctccatttggcggcgttgagatggccagggctcctcgcagttg
cttttcaatatgtcattactcagccctggatgcaattttagaatgtcgtg
tagaacaccctgactgaagaacaccctgtcctgatggtagtacatatgaa
ggtgggaatgacccatggaagaacctgtgacatttgcacaatgcttttca
ggggtctttagctaagtggtctttttttattggtcacagaaaggttggca
agacatcataatttctggcttaaagtcaacttttcataaagatgagggat
ttcccagtgttaacttgctggaagagaaaggagccagggtttgaacttac
accccagtagtggcctttatcttgtagaatcttatattttcaatgttctt
ttcatttcagaccagggtggacaccatcggtttcaggacaatgtaataat
gatcagagtgtcaccggggtatagatttcttttcccttagcttttcttgt
ccttaagtcaaacttcttttcctccaggcttctccttggagagcagggtg
gcttcctgttgctctcagctaacttctctccttcagagaagcttttgttt
tcctcattcctcattgtccttcactggttgaatatctatctctgaaccag
agagtgtaatcagaggcttgaaacgctgtgtttgggcaggcctgaatcgt
gtgactttcccagaagccagcaatgccatcattcttgtttaaattacagg
gaaaggaggctggaaaggcagttcccagaagaaaattgagcattgttacc
agaatgcttactgggcacacatgacaggaaacccctctgggctggattac
aagttgcaataatgggctcccctatttcttacgcttcccaattgcatttg
ggccgatggagagttctgggcagattgaagtcaagagaagagttgggggg
aaggcatacctctcccaacccagtctttttctcgtaggtcatcccacagc
cccaaagctcaacagcttctgcaagacatctctctgcatactcagctgtt
cctgttggagtacagcgtaagcccagatctccagtccag

gaattctttatgaagcctccgtcataagaacttaattcacccatgaggaa
aggagccctcggcacctaatcagctcttgtatgccccaccccttgatcct
atgacaccgaatacatgggaaccttaaatacttattcaaactgtagcagg
catatacccacttcccttggtaatggactctgcggttggggggtggcttt
gagcatttgtctttaaaagggtgccttgacaactttacatggacttgccg
agttttgtaggcagcagtagaacttgcataagcagaaaggaaatcaagta
tgaactatgaggtctgaagaattaaatcttggatgccagtatcagccaca
ggaaccaggccaaggtgcaaaccaaaccaggtccatcaaaggtgttaact
aggctatctctgatggagcttgcaagagaggttcttttcttctttggtcc
tattcaagaagaatatacaacctcataactccagggagatggagtcgtgt
ggacagacccccccccccaagaagcctttgtgcaaagtagaaaacgtgtc
ccttttccaaacccagtggcttttgttagaaaaagacacttgggtgccat
ctactggcacttttctatatcaggtgcacagatttgtgaggtccatctga
cttgtgtcccttagatggacactgggcattgtatgacaacctaatgacaa
gtgtgtccccgatcacctggggaagttagacttagcaattcacaaaagaa
gtagacatggcgaagacagaggtttccacgggctccaaaatactgactgt
agcccccaaactctccaaagttggcctggttcctataagtcttcttccat
tcttctagtggctcccaaactctttgcaatatattcttttacctcgtgat
ccagtaactaatttcaaaacaggactcgtgtcttacatacaaaggagtcc
tagaaaatcgactcagtcttaacaagaaaacatttttctggtctaatata
agctttagctcgacaatttggacctctgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_66359944_66361089
seq2: B6Ng01-339P06.b_48_1186 (reverse)

seq1  CTGGACCTGAAGATCTGTGAGCTTCACGCTGTGCTCCCAACAGGGAACAG  50
      ||||| ||| |||||  || |||| ||||||| || |||||| |||||| 
seq2  CTGGA-CTGGAGATC--TGGGCTT-ACGCTGTACT-CCAACA-GGAACA-  43

seq1  GCTGAAGTATGCAGAGAGGATTGTCTGGCAGGAGCTG-TGAGCTTTGGGG  99
      |||| |||||||||||||   ||||| |||| ||||| ||||||||||||
seq2  GCTG-AGTATGCAGAGAG--ATGTCTTGCAGAAGCTGTTGAGCTTTGGGG  90

seq1  CTGTGGGATGACCTTACGAGAAAAAGACTGGGTTGGGGGAAGTAATGCCC  149
      ||||||||||||| ||||||||||||||||||||||| || || ||||| 
seq2  CTGTGGGATGACC-TACGAGAAAAAGACTGGGTTGGGAGAGGT-ATGCCT  138

seq1  TTCCCCC-ACTCTTCTCCTTGACTTCAATCTG-CCAGAACTCTCCATCGG  197
      | ||||| |||||||| ||||||||||||||| |||||||||||||||||
seq2  TCCCCCCAACTCTTCT-CTTGACTTCAATCTGCCCAGAACTCTCCATCGG  187

seq1  -CCAAATGCAATT-GGAAGCGTAAGAAATAGGGGAGCCCATTATTGCAAC  245
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCAAATGCAATTGGGAAGCGTAAGAAATAGGGGAGCCCATTATTGCAAC  237

seq1  TTGTAATCCAGCCCAGAGGGGTTCCCTGTCATGTGTGCCCAGTAAGCATT  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTAATCCAGCCCAGAGGGGTTTCCTGTCATGTGTGCCCAGTAAGCATT  287

seq1  CTGGTAACAATGCTCAATTTTCTTCTGGGAACTGCCTTTCCAGCCTCC-T  344
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGGTAACAATGCTCAATTTTCTTCTGGGAACTGCCTTTCCAGCCTCCTT  337

seq1  TCCCTGTAATTTAAACAAGAATGATGGCATTGCTGGCTTCTGGGAAAGTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTAATTTAAACAAGAATGATGGCATTGCTGGCTTCTGGGAAAGTC  387

seq1  ACACGATTCAGGCCTGCCCAAACACAGCGTTTCAAGCCTCTGATTACACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGATTCAGGCCTGCCCAAACACAGCGTTTCAAGCCTCTGATTACACT  437

seq1  CTCTGGTTCAGAGATAGATATTCAACCAGTGAAGGACAATGAGGAATGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTCAGAGATAGATATTCAACCAGTGAAGGACAATGAGGAATGAG  487

seq1  GAAAACAAAAGCTTCTCTGAAGGAGAGAAGTTAGCTGAGAGCAACAGGAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAAGCTTCTCTGAAGGAGAGAAGTTAGCTGAGAGCAACAGGAA  537

seq1  GCCACCCTGCTCTCCAAGGAGAAGCCTGGAGGAAAAGAAGTTTGACTTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTGCTCTCCAAGGAGAAGCCTGGAGGAAAAGAAGTTTGACTTAA  587

seq1  GGACAAGAAAAGCTAAGGGAAAAGAAATCTATACCCCGGTGACACTCTGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAGAAAAGCTAAGGGAAAAGAAATCTATACCCCGGTGACACTCTGA  637

seq1  TCATTATTACATTGTCCTGAAACCGATGGTGTCCACCCTGGTCTGAAATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTACATTGTCCTGAAACCGATGGTGTCCACCCTGGTCTGAAATG  687

seq1  AAAAGAACATTGAAAATATAAGATTCTACAAGATAAAGGCCACTACTGGG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACATTGAAAATATAAGATTCTACAAGATAAAGGCCACTACTGGG  737

seq1  GTGTAAGTTCAAACCCTGGCTCCTTTCTCTTCCAGCAAGTTAACACTGGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGTTCAAACCCTGGCTCCTTTCTCTTCCAGCAAGTTAACACTGGG  787

seq1  AAATCCCTCATCTTTATGAAAAGTTGACTTTAAGCCAGAAATTATGATGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTCATCTTTATGAAAAGTTGACTTTAAGCCAGAAATTATGATGT  837

seq1  CTTGCCAACCTTTCTGTGACCAATAAAAAAAGACCACTTAGCTAAAGACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAACCTTTCTGTGACCAATAAAAAAAGACCACTTAGCTAAAGACC  887

seq1  CCTGAAAAGCATTGTGCAAATGTCACAGGTTCTTCCATGGGTCATTCCCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAGCATTGTGCAAATGTCACAGGTTCTTCCATGGGTCATTCCCA  937

seq1  CCTTCATATGTACTACCATCAGGACAGGGTGTTCTTCAGTCAGGGTGTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATATGTACTACCATCAGGACAGGGTGTTCTTCAGTCAGGGTGTTC  987

seq1  TACACGACATTCTAAAATTGCATCCAGGGCTGAGTAATGACATATTGAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGACATTCTAAAATTGCATCCAGGGCTGAGTAATGACATATTGAAA  1037

seq1  AGCAACTGCGAGGAGCCCTGGCCATCTCAACGCCGCCAAATGGAGAAAGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGCGAGGAGCCCTGGCCATCTCAACGCCGCCAAATGGAGAAAGA  1087

seq1  AAGAACGAAATTGACGAGATTGGCTTTATTTGAAAGGAGCGGAATGGAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGAAATTGACGAGATTGGCTTTATTTGAAAGGAGCGGAATGGAAT  1137

seq1  TC  1146
      ||
seq2  TC  1139


seq1: chr10_66197182_66198204
seq2: B6Ng01-339P06.g_67_1097

seq1  GAATTCTTTATGAAGCCTCCGTCATAAGAACTTAATTCACCCATGAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGAAGCCTCCGTCATAAGAACTTAATTCACCCATGAGGAA  50

seq1  AGGAGCCCTCGGCACCTAATCAGCTCTTGTATGCCCCACCCCTTGATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCCTCGGCACCTAATCAGCTCTTGTATGCCCCACCCCTTGATCCT  100

seq1  ATGACACCGAATACATGGGAACCTTAAATACTTATTCAAACTGTAGCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACCGAATACATGGGAACCTTAAATACTTATTCAAACTGTAGCAGG  150

seq1  CATATACCCACTTCCCTTGGTAATGGACTCTGCGGTTGGGGGGTGGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCCACTTCCCTTGGTAATGGACTCTGCGGTTGGGGGGTGGCTTT  200

seq1  GAGCATTTGTCTTTAAAAGGGTGCCTTGACAACTTTACATGGACTTGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTGTCTTTAAAAGGGTGCCTTGACAACTTTACATGGACTTGCCG  250

seq1  AGTTTTGTAGGCAGCAGTAGAACTTGCATAAGCAGAAAGGAAATCAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTAGGCAGCAGTAGAACTTGCATAAGCAGAAAGGAAATCAAGTA  300

seq1  TGAACTATGAGGTCTGAAGAATTAAATCTTGGATGCCAGTATCAGCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATGAGGTCTGAAGAATTAAATCTTGGATGCCAGTATCAGCCACA  350

seq1  GGAACCAGGCCAAGGTGCAAACCAAACCAGGTCCATCAAAGGTGTTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCAGGCCAAGGTGCAAACCAAACCAGGTCCATCAAAGGTGTTAACT  400

seq1  AGGCTATCTCTGATGGAGCTTGCAAGAGAGGTTCTTTTCTTCTTTGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATCTCTGATGGAGCTTGCAAGAGAGGTTCTTTTCTTCTTTGGTCC  450

seq1  TATTCAAGAAGAATATACAACCTCATAACTCCAGGGAGATGGAGTCGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGAAGAATATACAACCTCATAACTCCAGGGAGATGGAGTCGTGT  500

seq1  GGACAGACCCCCCCCCCCAAGAAGCCTTTGTGCAAAGTAGAAAACGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACCCCCCCCCCCAAGAAGCCTTTGTGCAAAGTAGAAAACGTGTC  550

seq1  CCTTTTCCAAACCCAGTGGCTTTTGTTAGAAAAAGACACTTGGGTGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCCAAACCCAGTGGCTTTTGTTAGAAAAAGACACTTGGGTGCCAT  600

seq1  CTACTGGCACTTTTCTATATCAGGTGCACAGATTTGTGAGGTCCATCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGCACTTTTCTATATCAGGTGCACAGATTTGTGAGGTCCATCTGA  650

seq1  CTTGTGTCCCTTAGATGGACACTGGGCATTGTATGACAACCTAATGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTCCCTTAGATGGACACTGGGCATTGTATGACAACCTAATGACAA  700

seq1  GTGTGTCCCCGATCACCTGGGGAAGTTAGACTTAGCAATTCACAAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCCCCGATCACCTGGGGAAGTTAGACTTAGCAATTCACAAAAGAA  750

seq1  GTAGACATGGCGAAGACAGAGGTTTCCACGGGCTCCAAAATACTGACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATGGCGAAGACAGAGGTTTCCACGGGCTCCAAAATACTGACTGT  800

seq1  AGCCCCCAAACTCTCCAAAGTTGGCCTGGTTCCTATAAGTCTTTCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGCCCCCAAACTCTCCAAAGTTGGCCTGGTTCCTATAAGTC-TTCTTCCA  849

seq1  TTCTTCTAGTGGCTCCCAAACTCTTTGCAATATATTCTTTTACC-CGTGA  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTTCTAGTGGCTCCCAAACTCTTTGCAATATATTCTTTTACCTCGTGA  899

seq1  TCCAGTAACTAATT--CAAACAGGACCCGTGTCTTACATACAAAGGAGTC  947
      ||||||||||||||   ||||||||| |||||||||||||||||||||||
seq2  TCCAGTAACTAATTTCAAAACAGGACTCGTGTCTTACATACAAAGGAGTC  949

seq1  CTAGAAAATCGACTCAGTCTT-ACAAAGAAACA-TTTTCT-GTCT-ATAT  993
      ||||||||||||||||||||| ||||  ||||| |||||| |||| ||||
seq2  CTAGAAAATCGACTCAGTCTTAACAAGAAAACATTTTTCTGGTCTAATAT  999

seq1  AAGC-TTAGCTCGGACATTT-GACCTCTGTGA  1023
      |||| ||||||||   |||| |||||||||||
seq2  AAGCTTTAGCTCGACAATTTGGACCTCTGTGA  1031


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