BAC Information

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BAC

Clone NameB6Ng01-340E07
Chromosome10 (Build37)
Map Location 64,309,170 - 64,374,989
singlet/doubletdoublet
Overlap geneCtnna3
Upstream geneLrrtm3
Downstream geneLOC665206, LOC216036
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340E07.bB6Ng01-340E07.g
ACCGA124024GA124025
length1,1771,178
definitionB6Ng01-340E07.b B6Ng01-340E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,373,805 - 64,374,989)(64,309,170 - 64,310,366)
sequence
gaattcatgcaaattttgagaaaaaaacctacaaaacatcatattcatgg
gatttttttaataaaatcattgtagatttctgggtttttctgaagacagt
ggttatctttcaaatcaattcttgattaagggtacattcattttgaactc
tgtctttgtagagcctctaacagttttcagaataatttgctttataaatc
tggaaagtcaaaaatagcatttcaactaagggcttttgttttatgttcta
cagaatagcagtataaaaagctttacaacacacacaaaaaatgtacatga
taacatgaactacagagatgcctacattatgctgttctctttgagccata
tgcatgaatgtagacctgtcaaatgcggaggggtttaaccacagaaccag
aggctcattacagtgacctacactgtgctgctaaagacacgttggctttt
gctttcctgaaacattttttcttatttcggagtggtgccttattagttct
atggagccagtcatgtggagataaaatagacacaaaagacttgtctccat
atttaattttcctaaagttatctctgaccacagcatcctatggaggcctt
ccaagcaaagccctagataatcattttgacgacttaggaacaagtctgta
acttttgatttctgttagaagagatgtttaaggctccccatggattctct
ctattttttttttctattttcggaaacgaaatatcattgaggaattcttc
tttgaactacataaaagggtaaaattaaatcactgcaagtgtttttatag
ttatgaaaatgtgggtaacttttttaaaatggcagtgaattagtgagtaa
gaattagtggcttccaggggctacactacctttacattcttatcagcaaa
gaacaaaaaacaacaacaaaaaaatcccacataaacaaaacaaactacag
aacatcctaggcacctgtcagtcatggtgccaaaaaaaaaaaaaaaaaca
gttgtgatgtaacataatattaaactctgaattgtacttaaacgtctgag
aataaaagactttattttgtagttcagatttatcaatactgatatatctc
tatttacattgtattgctatttatccacatgaagtagaactcatttcttt
ctgagtacaatatctttgtgtgtttac

gaattcaacaaattcgcttctaaattggaataattttttttagtccttcc
atactttgtcttaaaatacattctggttttcctaatttatttaatttttt
ctagacttatctataatttctataatgtctactattaagaacttacatca
ggaaagattttggactaggctactatgataggaaaccaaagctagaataa
agtttgtgctccattttgcaaaacaaacaagcaaacaaacaaataaacaa
atggactgaagatttttcacagatgaaattataagattttattatcattt
ccagtgctaatcagtttgactaccaacaatagtcaacttatggtaaattt
ctttccatgatgaaatgttcctttgaaagttaggctcctcctcttctgaa
aaactggggaaattggagagaatgtggcatagctttcaaatgaatggttc
ccacctttcagagaaagacattaatatgctataaaatggacaagctttta
agaatatttgtttctcaaagaggcaaagaaataatttacaatcataaatg
taatagagtagagagtcccattgggaatgattgaaagtttattcatgctc
agggaagcataagtacattctagtcatgtccttagttcaggttctgacat
ggtctcctgcatcaggtcctggcattgtatctgtatccacttttattgcc
tctcattctctatcttaaactcaagtgatatttctaaaggcacttgatat
ttaccaccatacattgaaaataagactctgggtctgagtgccatttcttg
tgatgttcatattaaattcagcctacctctgccatgtgtaaggtacctct
agatttgttgcttgcttctatcttccacatctcagtcaactggttccctc
tagccccacctctttctatatcagctgcttattaggcgtttgacttcctc
tcagcatttatctacctgtgaaggtcatagtcacatcagtaccttttttt
ttttcttcctcaccagtaatacttatcttcatagaattctacattggctc
agatttcatatctaacagcctcactcattcatgcacagtgatacaaatat
cttctagcatagcatcaatggtagcatgatctcattcggcttgaactctg
attagagttacctaataacctataatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_64373805_64374989
seq2: B6Ng01-340E07.b_43_1219 (reverse)

seq1  GTAAACACACAAATTATA-TGTACCTTCAGAAGAAAATGAGTTCTACTTC  49
      |||||||||||||  ||| |||||  ||||||  ||||||||||||||||
seq2  GTAAACACACAAA-GATATTGTAC--TCAGAAAGAAATGAGTTCTACTTC  47

seq1  ATGT-GATAAATAGCAATTACAATGTTAATAGAGATTAATATCAGTATTG  98
      |||| |||||||||||| |||||||| |||||||||  ||||||||||||
seq2  ATGTGGATAAATAGCAA-TACAATGTAAATAGAGAT--ATATCAGTATTG  94

seq1  ATAAATTCTGAACTACAAAATAAAGTC-TATATTCTCAGACGTTTAAGTA  147
      ||||| ||||||||||||||||||||| | ||||||||||||||||||||
seq2  ATAAA-TCTGAACTACAAAATAAAGTCTTTTATTCTCAGACGTTTAAGTA  143

seq1  CAAATTCAGAGTTTAATATTATGTTACATCACAACTGTTTTTTTTTTTTT  197
      | |||||||||||||||||||||||||||||||||||  |||||||||||
seq2  C-AATTCAGAGTTTAATATTATGTTACATCACAACTG--TTTTTTTTTTT  190

seq1  TTTTTTGGCACCATGACTGACAGGTGCCTAGGATGTTCTGTAGTTTGTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCACCATGACTGACAGGTGCCTAGGATGTTCTGTAGTTTGTTT  240

seq1  TGTTTATGTGGGATTTTTTTTGTTGTTGTTTTTTGTTCTTTGCTGATAAG  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGTGGGA-TTTTTTTGTTGTTGTTTTTTGTTCTTTGCTGATAAG  289

seq1  AATGTAAAGGTAGTGTAGCCCCTGGAAGCCACTAATTCTTACTCACTAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGGTAGTGTAGCCCCTGGAAGCCACTAATTCTTACTCACTAAT  339

seq1  TCACTGCCATTTTAAAAAAGTTACCCACATTTTCATAACTATAAAAACAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCCATTTTAAAAAAGTTACCCACATTTTCATAACTATAAAAACAC  389

seq1  TTGCAGTGATTTAATTTTACCCTTTTATGTAGTTCAAAGAAGAATTCCTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGATTTAATTTTACCCTTTTATGTAGTTCAAAGAAGAATTCCTC  439

seq1  AATGATATTTCGTTTCCGAAAATAGAAAAAAAAAATAGAGAGAATCCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATTTCGTTTCCGAAAATAGAAAAAAAAAATAGAGAGAATCCATG  489

seq1  GGGAGCCTTAAACATCTCTTCTAACAGAAATCAAAAGTTACAGACTTGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTTAAACATCTCTTCTAACAGAAATCAAAAGTTACAGACTTGTT  539

seq1  CCTAAGTCGTCAAAATGATTATCTAGGGCTTTGCTTGGAAGGCCTCCATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTCGTCAAAATGATTATCTAGGGCTTTGCTTGGAAGGCCTCCATA  589

seq1  GGATGCTGTGGTCAGAGATAACTTTAGGAAAATTAAATATGGAGACAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGTGGTCAGAGATAACTTTAGGAAAATTAAATATGGAGACAAGT  639

seq1  CTTTTGTGTCTATTTTATCTCCACATGACTGGCTCCATAGAACTAATAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTCTATTTTATCTCCACATGACTGGCTCCATAGAACTAATAAG  689

seq1  GCACCACTCCGAAATAAGAAAAAATGTTTCAGGAAAGCAAAAGCCAACGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACTCCGAAATAAGAAAAAATGTTTCAGGAAAGCAAAAGCCAACGT  739

seq1  GTCTTTAGCAGCACAGTGTAGGTCACTGTAATGAGCCTCTGGTTCTGTGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTAGCAGCACAGTGTAGGTCACTGTAATGAGCCTCTGGTTCTGTGG  789

seq1  TTAAACCCCTCCGCATTTGACAGGTCTACATTCATGCATATGGCTCAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCCTCCGCATTTGACAGGTCTACATTCATGCATATGGCTCAAAG  839

seq1  AGAACAGCATAATGTAGGCATCTCTGTAGTTCATGTTATCATGTACATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCATAATGTAGGCATCTCTGTAGTTCATGTTATCATGTACATTT  889

seq1  TTTGTGTGTGTTGTAAAGCTTTTTATACTGCTATTCTGTAGAACATAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTTGTAAAGCTTTTTATACTGCTATTCTGTAGAACATAAAA  939

seq1  CAAAAGCCCTTAGTTGAAATGCTATTTTTGACTTTCCAGATTTATAAAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCCCTTAGTTGAAATGCTATTTTTGACTTTCCAGATTTATAAAGC  989

seq1  AAATTATTCTGAAAACTGTTAGAGGCTCTACAAAGACAGAGTTCAAAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTCTGAAAACTGTTAGAGGCTCTACAAAGACAGAGTTCAAAATG  1039

seq1  AATGTACCCTTAATCAAGAATTGATTTGAAAGATAACCACTGTCTTCAGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACCCTTAATCAAGAATTGATTTGAAAGATAACCACTGTCTTCAGA  1089

seq1  AAAACCCAGAAATCTACAATGATTTTATTAAAAAAATCCCATGAATATGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAGAAATCTACAATGATTTTATTAAAAAAATCCCATGAATATGA  1139

seq1  TGTTTTGTAGGTTTTTTTCTCAAAATTTGCATGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTAGGTTTTTTTCTCAAAATTTGCATGAATTC  1177


seq1: chr10_64309170_64310366
seq2: B6Ng01-340E07.g_65_1242

seq1  GAATTCAACAAATTCGCTTCTAAATTGGAATAATTTTTTTTAGTCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAAATTCGCTTCTAAATTGGAATAATTTTTTTTAGTCCTTCC  50

seq1  ATACTTTGTCTTAAAATACATTCTGGTTTTCCTAATTTATTTAATTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGTCTTAAAATACATTCTGGTTTTCCTAATTTATTTAATTTTTT  100

seq1  CTAGACTTATCTATAATTTCTATAATGTCTACTATTAAGAACTTACATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTTATCTATAATTTCTATAATGTCTACTATTAAGAACTTACATCA  150

seq1  GGAAAGATTTTGGACTAGGCTACTATGATAGGAAACCAAAGCTAGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATTTTGGACTAGGCTACTATGATAGGAAACCAAAGCTAGAATAA  200

seq1  AGTTTGTGCTCCATTTTGCAAAACAAACAAGCAAACAAACAAATAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGCTCCATTTTGCAAAACAAACAAGCAAACAAACAAATAAACAA  250

seq1  ATGGACTGAAGATTTTTCACAGATGAAATTATAAGATTTTATTATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTGAAGATTTTTCACAGATGAAATTATAAGATTTTATTATCATTT  300

seq1  CCAGTGCTAATCAGTTTGACTACCAACAATAGTCAACTTATGGTAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTAATCAGTTTGACTACCAACAATAGTCAACTTATGGTAAATTT  350

seq1  CTTTCCATGATGAAATGTTCCTTTGAAAGTTAGGCTCCTCCTCTTCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGATGAAATGTTCCTTTGAAAGTTAGGCTCCTCCTCTTCTGAA  400

seq1  AAACTGGGGAAATTGGAGAGAATGTGGCATAGCTTTCAAATGAATGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGGGAAATTGGAGAGAATGTGGCATAGCTTTCAAATGAATGGTTC  450

seq1  CCACCTTTCAGAGAAAGACATTAATATGCTATAAAATGGACAAGCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCAGAGAAAGACATTAATATGCTATAAAATGGACAAGCTTTTA  500

seq1  AGAATATTTGTTTCTCAAAGAGGCAAAGAAATAATTTACAATCATAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATTTGTTTCTCAAAGAGGCAAAGAAATAATTTACAATCATAAATG  550

seq1  TAATAGAGTAGAGAGTCCCATTGGGAATGATTGAAAGTTTATTCATGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAGTAGAGAGTCCCATTGGGAATGATTGAAAGTTTATTCATGCTC  600

seq1  AGGGAAGCATAAGTACATTCTAGTCATGTCCTTAGTTCAGGTTCTGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCATAAGTACATTCTAGTCATGTCCTTAGTTCAGGTTCTGACAT  650

seq1  GGTCTCCTGCATCAGGTCCTGGCATTGTATCTGTATCCACTTTTATTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCTGCATCAGGTCCTGGCATTGTATCTGTATCCACTTTTATTGCC  700

seq1  TCTCATTCTCTATCTTAAACTCAAGTGATATTTCTAAAGGCACTTGATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCTATCTTAAACTCAAGTGATATTTCTAAAGGCACTTGATAT  750

seq1  TTACCACCATACATTGAAAATAAGACTCTGGGTCTGAGTGCCATTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACCATACATTGAAAATAAGACTCTGGGTCTGAGTGCCATTTCTTG  800

seq1  TGATGTTCATATTAAATTCAGCCTACCTCTGCCATGTGTAAGGTACCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTCATATTAAATTCAGCCTACCTCTGCCATGTGTAAGGTACCTCT  850

seq1  AGATTTGTTGCTTGCTTCTATCTTCCACATCTCAGGTCAACTGGTTCCCT  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGATTTGTTGCTTGCTTCTATCTTCCACATCTCA-GTCAACTGGTTCCCT  899

seq1  CTAGCCCCACCTCTTTCTATATCAGCTGC-TATTAGGCGTTTGACTTCCT  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAGCCCCACCTCTTTCTATATCAGCTGCTTATTAGGCGTTTGACTTCCT  949

seq1  CTCAAGCATTTATCTACCTGTGAAGGTCATAGTCACATCAGTACC-TTTT  998
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTC-AGCATTTATCTACCTGTGAAGGTCATAGTCACATCAGTACCTTTTT  998

seq1  TTTTTTCTTCCTCACCAGTAAATACTTATTCTTCCATAGAATTCTACATT  1048
      ||||||||||||||||||| |||||||| |||| ||||||||||||||||
seq2  TTTTTTCTTCCTCACCAGT-AATACTTA-TCTT-CATAGAATTCTACATT  1045

seq1  GGCTCAGAATTTCATATCTAAACAGCCTCACTCAATCATGCACCAGTGAT  1098
      ||||||| ||||||||||| |||||||||||||| ||||||| |||||||
seq2  GGCTCAG-ATTTCATATCT-AACAGCCTCACTCATTCATGCA-CAGTGAT  1092

seq1  ACAAATATCTTCATAGCATAGCATTCATTGTTAGCATGGAATTTCTCATT  1148
      |||||||||||| |||||||||| ||| || |||||||     |||||||
seq2  ACAAATATCTTC-TAGCATAGCA-TCAATGGTAGCATG----ATCTCATT  1136

seq1  CTGGCTTTTGAACTCTAAATTAGAGTTTACTCTATTAACCTATTAATAC  1197
      | |||  |||||||||  ||||||| |||| ||| ||||||| ||||||
seq2  C-GGC--TTGAACTCT-GATTAGAG-TTAC-CTAATAACCTA-TAATAC  1178


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