BAC Information

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BAC

Clone NameB6Ng01-340I11
Chromosome10 (Build37)
Map Location 109,639,248 - 109,750,477
singlet/doubletdoublet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340I11.bB6Ng01-340I11.g
ACCGA124208GA124209
length1,0721,173
definitionB6Ng01-340I11.b B6Ng01-340I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,749,400 - 109,750,477)(109,639,248 - 109,640,416)
sequence
gaattcactgctgtgatggcttgtatatgctcagcccagggagtggtgct
attagaaggtatggctctgttgtagtagatgtggccttgttggagtagat
gtgtcactgtgggtatgggatttttaagacccccatccttgctgcctgga
agccagtattctgctagtaaccttcagatgaagatgtagaactctcaact
cttcttgcaccatgtctgcctggatgctgccatgctcccaccttgatgat
aatggactgaaccttagaatctgtaagcctgtaccaatttaatgttgtgc
atataagagttgctttggtcatggtaactgtacactgcattaaaacccta
actgaaactactggctaatgtaaaacctaagtgtagcttcccttgaccca
caaaaaaaatcccatctagtgctctactcctttatgaaactaggatggct
agagaatttaatgcagcaagtatttaattttaatagcccctcagaaacat
ttgaaaccagacagctactgtgaaccacaggccacattcttatgctcatt
tgagtcaatttctttcttcatatagtgcttctcaggggctctaagttgag
gactccccagaagccaatggtagtgactcattctcagttggctcttagtg
tgtggaggttgctagtgaagatggcattatttccaaaccaaatgcttcct
ttgggttctgccttagttagggtttcattgctgtgaagagacaccatgac
caaggcaactctaaaaaaggacaacatttaattggggctggcttacagtt
tcagagactcagtccattaacatcatggcaggaagcatggcagcatgcag
gcagacagtgctatagaagaagttgagaggtctgcatcgtgatctgactg
gagccaggagaaaccaactcttctgcattgggcaaagcccaccaccatag
tgaggcacttcttcacaaggccatgcctcctagtagtgccactttctatg
ggccagaatattcaaaccaccacaggttctaaatgtattttgatcaaatc
ctgatcctctagttgagaccca

gaattctctatccaggaagagcttaggaaacacacggttctgttgatctt
atcatttggctgcaagaaaataagtgtctgtgacagatgaattgcactac
aatattaagggataccatagtgttttaacatcatttacaaaatgatggaa
aatactctgcacgaattcttctaagtgttctataattcttttttacctca
atgccttttccaggatactcatttgttggctgaacccctcaccgtctttg
gaacaacatttagctcatcgtgagatcacagaaagcatttgcaaagagtc
gagatgtccatttcaaaatcaaaaattatcaaataatttttatgggtaac
taatcaccgtgtaatatttctatacacttgcatgatgctaaactaatccc
tgcataagtgtctggtttttccttgttaacaaagctaacacaaacagttc
aaatactaacttaggaactagactgtcatgtctctaacgaaaaatattaa
gtttcactaaatttataccaggagaagaaaccactacccttggtctccag
agtaatgctcatctcctattctaagcatatgtacttgattataaaaaata
aatatgaaaagcccttctctggctgttcttgtccactggtctaacttggg
gctttgccttttatgacatatttttcattatctttttacatttattcaag
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagaaatcagaatacaaata
aaaagagtttggttctctttccaccacgtgagttccagagatgaactcaa
gtttccacgattcgccataactgcctttacccactgatcctcaccatagg
cccctaacgttttttcgtttcgtttcatttcgtttcgtttcgtttttttc
tacatgtcattctgaccagtagctcgggcccaacagaaactcgcgcaatg
gtgggactgttctgtgcatagccactgtgcatccactagccctgtggtgg
tggttcactacataaaataagacttatgaaattgaaaaatcaaatcctag
tcaatttacgttaattaaatctggatggactcatcacagatggaatgtgg
acttctcctctgaaatacggcatcagcttattttcaagctctgaatttcc
agagtctaattttctcactggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109749400_109750477
seq2: B6Ng01-340I11.b_45_1116 (reverse)

seq1  TGGGTTCTCAACTTAAGAGATCAGGATTTGAATCAAAATACATTTAGAAC  50
      |||| ||||||||  || |||||||||||| |||||||||||||||||||
seq2  TGGG-TCTCAACTAGAG-GATCAGGATTTG-ATCAAAATACATTTAGAAC  47

seq1  CTGTGGTGGTTTGAATATTCTTGGCCCATAGAAAGTGGCACTACTAGGAG  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGTGGTGGTTTGAATATTC-TGGCCCATAGAAAGTGGCACTACTAGGAG  96

seq1  GCATGGCCTTGTTGGAAGAAGTGCCTCACTATGGTGGTGGGCTTTGCCCA  150
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCTTGT--GAAGAAGTGCCTCACTATGGTGGTGGGCTTTGCCCA  144

seq1  ATGCAGAAGAGTTGGTTTCTCCTGGCTCCAGTCAGATCACGATGCAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAGAGTTGGTTTCTCCTGGCTCCAGTCAGATCACGATGCAGACC  194

seq1  TCTCAACTTCTTCTATAGCACTGTCTGCCTGCATGCTGCCATGCTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTTCTTCTATAGCACTGTCTGCCTGCATGCTGCCATGCTTCCTG  244

seq1  CCATGATGTTAATGGACTGAGTCTCTGAAACTGTAAGCCAGCCCCAATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGTTAATGGACTGAGTCTCTGAAACTGTAAGCCAGCCCCAATTA  294

seq1  AATGTTGTCCTTTTTTAGAGTTGCCTTGGTCATGGTGTCTCTTCACAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGTCCTTTTTTAGAGTTGCCTTGGTCATGGTGTCTCTTCACAGCA  344

seq1  ATGAAACCCTAACTAAGGCAGAACCCAAAGGAAGCATTTGGTTTGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCCTAACTAAGGCAGAACCCAAAGGAAGCATTTGGTTTGGAAAT  394

seq1  AATGCCATCTTCACTAGCAACCTCCACACACTAAGAGCCAACTGAGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCTTCACTAGCAACCTCCACACACTAAGAGCCAACTGAGAATG  444

seq1  AGTCACTACCATTGGCTTCTGGGGAGTCCTCAACTTAGAGCCCCTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTACCATTGGCTTCTGGGGAGTCCTCAACTTAGAGCCCCTGAGAA  494

seq1  GCACTATATGAAGAAAGAAATTGACTCAAATGAGCATAAGAATGTGGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATATGAAGAAAGAAATTGACTCAAATGAGCATAAGAATGTGGCCT  544

seq1  GTGGTTCACAGTAGCTGTCTGGTTTCAAATGTTTCTGAGGGGCTATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCACAGTAGCTGTCTGGTTTCAAATGTTTCTGAGGGGCTATTAAA  594

seq1  ATTAAATACTTGCTGCATTAAATTCTCTAGCCATCCTAGTTTCATAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATACTTGCTGCATTAAATTCTCTAGCCATCCTAGTTTCATAAAGG  644

seq1  AGTAGAGCACTAGATGGGATTTTTTTTGTGGGTCAAGGGAAGCTACACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAGCACTAGATGGGATTTTTTTTGTGGGTCAAGGGAAGCTACACTT  694

seq1  AGGTTTTACATTAGCCAGTAGTTTCAGTTAGGGTTTTAATGCAGTGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTACATTAGCCAGTAGTTTCAGTTAGGGTTTTAATGCAGTGTACA  744

seq1  GTTACCATGACCAAAGCAACTCTTATATGCACAACATTAAATTGGTACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCATGACCAAAGCAACTCTTATATGCACAACATTAAATTGGTACAG  794

seq1  GCTTACAGATTCTAAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACAGATTCTAAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGC  844

seq1  AGCATCCAGGCAGACATGGTGCAAGAAGAGTTGAGAGTTCTACATCTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCAGGCAGACATGGTGCAAGAAGAGTTGAGAGTTCTACATCTTCA  894

seq1  TCTGAAGGTTACTAGCAGAATACTGGCTTCCAGGCAGCAAGGATGGGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGTTACTAGCAGAATACTGGCTTCCAGGCAGCAAGGATGGGGGT  944

seq1  CTTAAAAATCCCATACCCACAGTGACACATCTACTCCAACAAGGCCACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAATCCCATACCCACAGTGACACATCTACTCCAACAAGGCCACAT  994

seq1  CTACTACAACAGAGCCATACCTTCTAATAGCACCACTCCCTGGGCTGAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTACAACAGAGCCATACCTTCTAATAGCACCACTCCCTGGGCTGAGC  1044

seq1  ATATACAAGCCATCACAGCAGTGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  ATATACAAGCCATCACAGCAGTGAATTC  1072


seq1: chr10_109639248_109640416
seq2: B6Ng01-340I11.g_66_1238

seq1  GAATTCTCTATCCAGGAAGAGCTTAGGAAACACACGGTTCTGTTGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATCCAGGAAGAGCTTAGGAAACACACGGTTCTGTTGATCTT  50

seq1  ATCATTTGGCTGCAAGAAAATAAGTGTCTGTGACAGATGAATTGCACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTGGCTGCAAGAAAATAAGTGTCTGTGACAGATGAATTGCACTAC  100

seq1  AATATTAAGGGATACCATAGTGTTTTAACATCATTTACAAAATGATGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGGGATACCATAGTGTTTTAACATCATTTACAAAATGATGGAA  150

seq1  AATACTCTGCACGAATTCTTCTAAGTGTTCTATAATTCTTTTTTACCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTGCACGAATTCTTCTAAGTGTTCTATAATTCTTTTTTACCTCA  200

seq1  ATGCCTTTTCCAGGATACTCATTTGTTGGCTGAACCCCTCACCGTCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTCCAGGATACTCATTTGTTGGCTGAACCCCTCACCGTCTTTG  250

seq1  GAACAACATTTAGCTCATCGTGAGATCACAGAAAGCATTTGCAAAGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACATTTAGCTCATCGTGAGATCACAGAAAGCATTTGCAAAGAGTC  300

seq1  GAGATGTCCATTTCAAAATCAAAAATTATCAAATAATTTTTATGGGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCCATTTCAAAATCAAAAATTATCAAATAATTTTTATGGGTAAC  350

seq1  TAATCACCGTGTAATATTTCTATACACTTGCATGATGCTAAACTAATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCACCGTGTAATATTTCTATACACTTGCATGATGCTAAACTAATCCC  400

seq1  TGCATAAGTGTCTGGTTTTTCCTTGTTAACAAAGCTAACACAAACAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGTGTCTGGTTTTTCCTTGTTAACAAAGCTAACACAAACAGTTC  450

seq1  AAATACTAACTTAGGAACTAGACTGTCATGTCTCTAACGAAAAATATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTAACTTAGGAACTAGACTGTCATGTCTCTAACGAAAAATATTAA  500

seq1  GTTTCACTAAATTTATACCAGGAGAAGAAACCACTACCCTTGGTCTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCACTAAATTTATACCAGGAGAAGAAACCACTACCCTTGGTCTCCAG  550

seq1  AGTAATGCTCATCTCCTATTCTAAGCATATGTACTTGATTATAAAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGCTCATCTCCTATTCTAAGCATATGTACTTGATTATAAAAAATA  600

seq1  AATATGAAAAGCCCTTCTCTGGCTGTTCTTGTCCACTGGTCTAACTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAAAGCCCTTCTCTGGCTGTTCTTGTCCACTGGTCTAACTTGGG  650

seq1  GCTTTGCCTTTTATGACATATTTTTCATTATCTTTTTACATTTATTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCTTTTATGACATATTTTTCATTATCTTTTTACATTTATTCAAG  700

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAAATCAGAATACAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAAATCAGAATACAAATA  750

seq1  AAAAGAG-TTGGTTCTCTTTCCACCACGTGAGTTCCAGAGATGAACTCAA  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTTTGGTTCTCTTTCCACCACGTGAGTTCCAGAGATGAACTCAA  800

seq1  GTTTCCACGATTCGCCATAACTGCCTTTACCCACTGATCCTCACCATAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACGATTCGCCATAACTGCCTTTACCCACTGATCCTCACCATAGG  850

seq1  CCCCTAACGTTTTTTCGTTTCGTTTCATTTCGTTTCGTTTCGTTTTTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAACGTTTTTTCGTTTCGTTTCATTTCGTTTCGTTTCGTTTTTTTC  900

seq1  TACATGTCATTCTGACCAGTAGCTC-GGCCCAACAG-AACTCGCGCAATG  947
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  TACATGTCATTCTGACCAGTAGCTCGGGCCCAACAGAAACTCGCGCAATG  950

seq1  GTGGGACTGTTCTGTGCATTAGCCACTGTGCATCCACTAGCCCTGT-GTG  996
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  GTGGGACTGTTCTGTGCA-TAGCCACTGTGCATCCACTAGCCCTGTGGTG  999

seq1  GTGGTTCACCACATAAAATAAGACTAATGAAATTGAAAAATCAAATTCTT  1046
      ||||||||| ||||||||||||||| ||||||||||||||||||| || |
seq2  GTGGTTCACTACATAAAATAAGACTTATGAAATTGAAAAATCAAA-TCCT  1048

seq1  AGT-AATTTAGTTTAATTAAAATTTGAATGGA-TAAATAAAGATAGGAAA  1094
      ||| ||||||  |||||| |||| || ||||| | |  | ||||  | ||
seq2  AGTCAATTTACGTTAATT-AAATCTGGATGGACTCATCACAGAT--GGAA  1095

seq1  TGT-GACATC-ACTCAGAAAAACAGCAATCAGCTATTTTTCAAGCTCTG-  1141
      ||| ||| ||  ||| |||| || || |||||||  ||||||||||||| 
seq2  TGTGGACTTCTCCTCTGAAATACGGC-ATCAGCTTATTTTCAAGCTCTGA  1144

seq1  ATTTCCAGAGTCTAAATTTCT-ACTGGTT  1169
      ||||||||||||||| ||||| |||||||
seq2  ATTTCCAGAGTCTAATTTTCTCACTGGTT  1173


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