BAC Information

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BAC

Clone NameB6Ng01-340K02
Chromosome10 (Build37)
Map Location 23,502,311 - 23,630,633
singlet/doubletdoublet
Overlap geneRps12, 1110021L09Rik, Vnn3, Vnn1
Upstream geneTcf21, Eya4
Downstream geneTaar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340K02.bB6Ng01-340K02.g
ACCGA124269GA124270
length5571,100
definitionB6Ng01-340K02.b B6Ng01-340K02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,630,074 - 23,630,633)(23,502,311 - 23,503,428)
sequence
aaataggttctcaggaggaacttttggttatatttcttggaaattttcac
ttctctacagattataggaagtagggagaccttaaatggctttcccaata
tcctataactctcctactgtgagataaactaagaagcagttatctgtgtt
cagcagtagataattgaaacgacactgtggtgtttgcacgggttattcac
cagtgtgtccacctggcatgcaggaagctctatccttagatcttcacaaa
actgtccttggtagttcatggctgtaatttattgcttgggaagcgagaca
ggaaaatcagaaattcaacttattcttggctacatataaaatttgaggct
agtctaggctccatatggggtgggggggttacagttactatggtctcaca
caccctcttaaataatagaaattttactaaaatggactgagtaaatgaaa
gttaagtgaagggagctattattagttgctttaattcatttcattcacat
tttgttccgaaaaaaaaaaaacttgtaagaaaaatggagaataagactct
cccagtg
gaattcactgtgtagaccaggctggccttgaactcagaaatccgcctgcc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccacgcccggctc
aaacagaacttttatgttcagttttaaatgtcaatgaggggggttgagct
gaaatggaaaataaaaggacaaatactaggtttgtaatggattttcacgt
cactcgcaataaccatggttcaagaaaaaattattgcagtgtaaaaatag
tttccctgaattcactttttttctttttaacttttttttttttttactat
tcctgggtcttaaaataacttttaaaattatttgttcagactcctagagt
gattggatatgtttctttgccctgttccctagagtggagttggagaaaag
agaaattgagacagcttggcaccatactagcctgaaagagacccaggctg
tgactgacttgttgccaggacatgaaaaagggtggaaagcaattcagcct
tagaataaaggccatgaacaaattaacccaatcccaagcacctctcatct
taagcaccacaccagactgcaatggctgatgctgatcagagctaatgtga
ttaaatctcccagcacacccagcccttgcccattcccctagcagggcttc
tctagaaccttctgcaatttatataacatacagaatagggacggacataa
taccgaggataagggagatcctagtgaaacaccttccaccactacacaga
acccttcatcagctctggagtgtggattctgcaacaaaggctaaaacatt
aaaacattctgacagtaagccctcaacactcttgattcttttggacaaag
atgtggctggggaagtagttgactgctctgtatgcaagcagaacttgagt
ttgaatcctcagtacccactttaaaagtgggagtgcctgccacatctgtg
tgagtcatacaggagtatgacttggggattactgagtagcctagtccaga
ttcacaagtctcaagataacgtagcatccttttgcctctattgcacacac
caatatactaaccgcataaccactgttagaaaacattgatatgtggtaac

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_23630074_23630633
seq2: B6Ng01-340K02.b_46_608 (reverse)

seq1  CACT-GGAGAGTCTTATTCT-CATTTTTCTTAC-AGTTTTTTTTTTTTCA  47
      |||| ||||||||||||||| |||||||||||| ||||||||||||||| 
seq2  CACTGGGAGAGTCTTATTCTCCATTTTTCTTACAAGTTTTTTTTTTTTCG  50

seq1  GAACAAAATGTGAATGAAATGAATTAAAGCAACTAATAATAGCTCCCTTC  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATGTGAATGAAATGAATTAAAGCAACTAATAATAGCTCCCTTC  100

seq1  ACTTAACTTTCATTTACTCAGTCCATTTTAGTAAAATTTCTATTATTTAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTTTCATTTACTCAGTCCATTTTAGTAAAATTTCTATTATTTAA  150

seq1  GAGGGTGTGTGAGACCATAGTAACTGTAACCCCCCCACCCCATATGGAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTGTGAGACCATAGTAACTGTAACCCCCCCACCCCATATGGAGC  200

seq1  CTAGACTAGCCTCAAATTTTATATGTAGCCAAGAATAAGTTGAATTTCTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTAGCCTCAAATTTTATATGTAGCCAAGAATAAGTTGAATTTCTG  250

seq1  ATTTTCCTGTCTCGCTTCCCAAGCAATAAATTACAGCCATGAACTACCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGTCTCGCTTCCCAAGCAATAAATTACAGCCATGAACTACCAA  300

seq1  GGACAGTTTTGTGAAGATCTAAGGATAGAGCTTCCTGCATGCCAGGTGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTTGTGAAGATCTAAGGATAGAGCTTCCTGCATGCCAGGTGGA  350

seq1  CACACTGGTGAATAACCCGTGCAAACACCACAGTGTCGTTTCAATTATCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGGTGAATAACCCGTGCAAACACCACAGTGTCGTTTCAATTATCT  400

seq1  ACTGCTGAACACAGATAACTGCTTCTTAGTTTATCTCACAGTAGGAGAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAACACAGATAACTGCTTCTTAGTTTATCTCACAGTAGGAGAGT  450

seq1  TATAGGATATTGGGAAAGCCATTTAAGGTCTCCCTACTTCCTATAATCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGATATTGGGAAAGCCATTTAAGGTCTCCCTACTTCCTATAATCTG  500

seq1  TAGAGAAGTGAAAATTTCCAAGAAATATAACCAAAAGTTCCTCCTGAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGTGAAAATTTCCAAGAAATATAACCAAAAGTTCCTCCTGAGAA  550

seq1  CCTATTTGAATTC  560
      |||||||||||||
seq2  CCTATTTGAATTC  563

seq1: chr10_23502311_23503428
seq2: B6Ng01-340K02.g_65_1164

seq1  GAATTCACTGTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTC  100

seq1  AAACAGAACTTTTATGTTCAGTTTTAAATGTCAATGAGGGGGGTTGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAACTTTTATGTTCAGTTTTAAATGTCAATGAGGGGGGTTGAGCT  150

seq1  GAAATGGAAAATAAAAGGACAAATACTAGGTTTGTAATGGATTTTCACGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAAAATAAAAGGACAAATACTAGGTTTGTAATGGATTTTCACGT  200

seq1  CACTCGCAATAACCATGGTTCAAGAAAAAATTATTGCAGTGTAAAAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCAATAACCATGGTTCAAGAAAAAATTATTGCAGTGTAAAAATAG  250

seq1  TTTCCCTGAATTCACTTTTTTTCTTTTTAACTTTTTTTTTTTTTTACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGAATTCACTTTTTTTCTTTTTAACTTTTTTTTTTTTTTACTAT  300

seq1  TCCTGGGTCTTAAAATAACTTTTAAAATTATTTGTTCAGACTCCTAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTCTTAAAATAACTTTTAAAATTATTTGTTCAGACTCCTAGAGT  350

seq1  GATTGGATATGTTTCTTTGCCCTGTTCCCTAGAGTGGAGTTGGAGAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGATATGTTTCTTTGCCCTGTTCCCTAGAGTGGAGTTGGAGAAAAG  400

seq1  AGAAATTGAGACAGCTTGGCACCATACTAGCCTGAAAGAGACCCAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGAGACAGCTTGGCACCATACTAGCCTGAAAGAGACCCAGGCTG  450

seq1  TGACTGACTTGTTGCCAGGACATGAAAAAGGGTGGAAAGCAATTCAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACTTGTTGCCAGGACATGAAAAAGGGTGGAAAGCAATTCAGCCT  500

seq1  TAGAATAAAGGCCATGAACAAATTAACCCAATCCCAAGCACCTCTCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAAAGGCCATGAACAAATTAACCCAATCCCAAGCACCTCTCATCT  550

seq1  TAAGCACCACACCAGACTGCAATGGCTGATGCTGATCAGAGCTAATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCACCACACCAGACTGCAATGGCTGATGCTGATCAGAGCTAATGTGA  600

seq1  TTAAATCTCCCAGCACACCCAGCCCTTGCCCATTCCCCTAGCAGGGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTCCCAGCACACCCAGCCCTTGCCCATTCCCCTAGCAGGGCTTC  650

seq1  TCTAGAACCTTCTGCAATTTATATAACATACAGAATAGGGACGGACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACCTTCTGCAATTTATATAACATACAGAATAGGGACGGACATAA  700

seq1  TACCGAGGATAAGGGAGATCCTAGTGAAACACCTTCCACCACTACACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGAGGATAAGGGAGATCCTAGTGAAACACCTTCCACCACTACACAGA  750

seq1  ACCCTTCATCAGCTCTGGAGTGTGGATTCTGCAACAAAGGCTAAAACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCATCAGCTCTGGAGTGTGGATTCTGCAACAAAGGCTAAAACATT  800

seq1  AAAACATTCTGACAGTAAGCCCTCAACACTCTTGATTCTTTTGGACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTCTGACAGTAAGCCCTCAACACTCTTGATTCTTTTGGACAAAG  850

seq1  ATGTGGCTGGGGAAGTAGTTGACTGCTCTGTATGCAAGCAGAACTTGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCTGGGGAAGTAGTTGACTGCTCTGTATGCAAGCAGAACTTGAGT  900

seq1  TTGAATCCTCAGTACCCACTTTAAAAAGTGGGAGTGCCTG-CACATCTGT  949
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  TTGAATCCTCAGTACCCACTTT-AAAAGTGGGAGTGCCTGCCACATCTGT  949

seq1  GTGAGTCATACAGGAGTATGAC-TGGGGATTACTGGAGGTAGCCTAGTTC  998
      |||||||||||||||||||||| ||||||||||||   ||||||||| ||
seq2  GTGAGTCATACAGGAGTATGACTTGGGGATTACTG--AGTAGCCTAG-TC  996

seq1  CAGATTCAACAAGTCTCAAAGGAATAAACAGAAAAAGCATCCTTTTGGCC  1048
      ||||||| |||||||||||    |||     |   ||||||||||| |||
seq2  CAGATTC-ACAAGTCTCAA---GATA-----ACGTAGCATCCTTTT-GCC  1036

seq1  TCCTAATGCACACACCCATATACATACACCGCATACACAACTGTAGAAAA  1098
      | ||| |||||||||| |||||| || |||||||| || |||||   |||
seq2  T-CTATTGCACACACCAATATAC-TA-ACCGCATA-ACCACTGTTAGAAA  1082

seq1  ACATATGGATATGTGGTAAC  1118
      ||  || |||||||||||||
seq2  AC--ATTGATATGTGGTAAC  1100