BAC Information

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BAC

Clone NameB6Ng01-340P05
Chromosome10 (Build37)
Map Location 87,589,017 - 87,714,262
singlet/doubletdoublet
Overlap gene4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Upstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch
Downstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340P05.bB6Ng01-340P05.g
ACCGA124488GA124489
length1,033615
definitionB6Ng01-340P05.b B6Ng01-340P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,589,017 - 87,590,050)(87,713,650 - 87,714,262)
sequence
gaattcactagcaggctcaaatatgaaaagaaaattttctttaccaatac
ccgtacctgtacagaaaagtattcgttatttctttattgcagttgttcta
gacctttttcttagatatatatgcagaaacagcatatagactcatgtaat
cacaacactgcatcccattctttaggcaaaaggaacagctagacaaactg
gaaacaaattggacagttaatatgttctttcttactgactgaacttaata
acaagcaaatactaactacagtggctactggaaactgacccttacaaagt
gatataaaaggatacctcgcaacaaggcctttctggtgagatttcaccct
ctttccctgtataagcctgccaggaaataatagccaaggacacagtctta
gaaccttacagcaggagccatcttgccactggacccaagtctacatccta
ttgtgatgccaggcacagagctacagttaaatgcttaagtttttgagagc
tattagataatgactttgacataatgaaataaccaaatatcaaaatgaat
gaaataaatgtttagaaaacaatgaaatttagtgagtattgatattaact
gacttctgggagcattaacaaatttaccaagaattatgtaagtcatataa
aaagatattaagtatatgaaataatcttaagagtttctgcagaattataa
tgatcaagatagaaaagtgtatacaaaaagacagatacacaggtcagcag
aatttgaaaagaatccaaaagcagatagacaaagacacagcaacaaaagt
acaaaactgccaaagtatcattactgggactgggccaacagatctccact
ttcatgtggcagcacatgaacctcaacccaaagctcacaccttttatgta
cattagctcaaatggatcataaacctaaatttacaatatagctatacagc
ttttagaacaaagcatagagaaaatccttaaattctgagcattggcagtg
agttagatttgacaccaaagcattattcaagaa
gaattcagttgttcttcaacaagatcagaatggggaagctgtttctaaag
tcaattttagaagatggactggaaaacagagccaatgagccaatattagc
ctattctagaactttctggtctttgggatataaattctagaattagatca
ggaccaggtaatgatattttggcagatgcaacacacgaagcatttcctct
gaagacaattcagacatctacataagacatgggcacatagttgcctggag
ggtctactcaaaaagaggccagtatgttcatgtgggcttcttggtggttc
aatgagcattttagaaatgatatggaagtatattggccatggcatgatgg
ttaaagaagagttcatgttttggaagagagaacaggaataaataatattc
atggtatatgcaaagttcactgaatgagaacaggaggaataacctcattc
attcaatatctctggcatatcttgaactacaaagccctattctgttagct
taactgaaaaggccaaggttggctttgaagcctcctcctaaattttgtgg
ttgcaaaactatctcttaggctagggattattcaacaagactagttcctt
cttcctgagggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87589017_87590050
seq2: B6Ng01-340P05.b_45_1077

seq1  GAATTCACTAGCAGGCTCAAATATGAAAAGAAAATTTTCTTTACCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGCAGGCTCAAATATGAAAAGAAAATTTTCTTTACCAATAC  50

seq1  CCGTACCTGTACAGAAAAGTATTCGTTATTTCTTTATTGCAGTTGTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTACCTGTACAGAAAAGTATTCGTTATTTCTTTATTGCAGTTGTTCTA  100

seq1  GACCTTTTTCTTAGATATATATGCAGAAACAGCATATAGACTCATGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTTTCTTAGATATATATGCAGAAACAGCATATAGACTCATGTAAT  150

seq1  CACAACACTGCATCCCATTCTTTAGGCAAAAGGAACAGCTAGACAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTGCATCCCATTCTTTAGGCAAAAGGAACAGCTAGACAAACTG  200

seq1  GAAACAAATTGGACAGTTAATATGTTCTTTCTTACTGACTGAACTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATTGGACAGTTAATATGTTCTTTCTTACTGACTGAACTTAATA  250

seq1  ACAAGCAAATACTAACTACAGTGGCTACTGGAAACTGACCCTTACAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAATACTAACTACAGTGGCTACTGGAAACTGACCCTTACAAAGT  300

seq1  GATATAAAAGGATACCTCGCAACAAGGCCTTTCTGGTGAGATTTCACCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAAAGGATACCTCGCAACAAGGCCTTTCTGGTGAGATTTCACCCT  350

seq1  CTTTCCCTGTATAAGCCTGCCAGGAAATAATAGCCAAGGACACAGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTGTATAAGCCTGCCAGGAAATAATAGCCAAGGACACAGTCTTA  400

seq1  GAACCTTACAGCAGGAGCCATCTTGCCACTGGACCCAAGTCTACATCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTACAGCAGGAGCCATCTTGCCACTGGACCCAAGTCTACATCCTA  450

seq1  TTGTGATGCCAGGCACAGAGCTACAGTTAAATGCTTAAGTTTTTGAGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATGCCAGGCACAGAGCTACAGTTAAATGCTTAAGTTTTTGAGAGC  500

seq1  TATTAGATAATGACTTTGACATAATGAAATAACCAAATATCAAAATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATAATGACTTTGACATAATGAAATAACCAAATATCAAAATGAAT  550

seq1  GAAATAAATGTTTAGAAAACAATGAAATTTAGTGAGTATTGATATTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAATGTTTAGAAAACAATGAAATTTAGTGAGTATTGATATTAACT  600

seq1  GACTTCTGGGAGCATTAACAAATTTACCAAGAATTATGTAAGTCATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGGGAGCATTAACAAATTTACCAAGAATTATGTAAGTCATATAA  650

seq1  AAAGATATTAAGTATATGAAATAATCTTAAGAGTTTCTGCAGAATTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATTAAGTATATGAAATAATCTTAAGAGTTTCTGCAGAATTATAA  700

seq1  TGATCAAGATAGAAAAGTGTATACAAAAAGACAGATACACAGGTCAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGATAGAAAAGTGTATACAAAAAGACAGATACACAGGTCAGCAG  750

seq1  AATTTGAAAAGAATCCAAAAGCAGATAGACAAAGACACAGCAACAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAAAAGAATCCAAAAGCAGATAGACAAAGACACAGCAACAAAAGT  800

seq1  ACAAAACTGCCAAAGTATCATTACTGGGACTGGGCCAACAGATCTCCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGCCAAAGTATCATTACTGGGACTGGGCCAACAGATCTCCACT  850

seq1  TTCATGTGGCAGCACATGAACCTCAACCCAAAGCTCACACCTTTTATGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGGCAGCACATGAACCTCAACCCAAAGCTCACACCTTTTATGTA  900

seq1  CATTAGCTCAAATGGATCATAAACCTAAATTTACAATATAGCTATACAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTCAAATGGATCATAAACCTAAATTTACAATATAGCTATACAGC  950

seq1  TTTTAGAACAAAGCATAGGAGAAAATCCTTAAA-TCTGAGCATTGGGCAG  999
      ||||||||||||||||| ||||||||||||||| |||||||||| |||||
seq2  TTTTAGAACAAAGCATA-GAGAAAATCCTTAAATTCTGAGCATT-GGCAG  998

seq1  TGAAGTTAGATTTGACACCAAAGCA-TAATCAAGAA  1034
      || |||||||||||||||||||||| || |||||||
seq2  TG-AGTTAGATTTGACACCAAAGCATTATTCAAGAA  1033

seq1: chr10_87713650_87714262
seq2: B6Ng01-340P05.g_67_681 (reverse)

seq1  AGAGCCCTCAGG-AGAAGGAACTAGTCTTGTTGAATAATCCCTAGCCTAA  49
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCTCAGGAAGAAGGAACTAGTCTTGTTGAATAATCCCTAGCCTAA  50

seq1  GAGATAG-TTTGCAACCACAAAATTTAGGAGGAGGCTTCAAAGCCAACCT  98
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGTTTTGCAACCACAAAATTTAGGAGGAGGCTTCAAAGCCAACCT  100

seq1  TGGCCTTTTCAGTTAAGCTAACAGAATAGGGCTTTGTAGTTCAAGATATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTTCAGTTAAGCTAACAGAATAGGGCTTTGTAGTTCAAGATATG  150

seq1  CCAGAGATATTGAATGAATGAGGTTATTCCTCCTGTTCTCATTCAGTGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATATTGAATGAATGAGGTTATTCCTCCTGTTCTCATTCAGTGAA  200

seq1  CTTTGCATATACCATGAATATTATTTATTCCTGTTCTCTCTTCCAAAACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATATACCATGAATATTATTTATTCCTGTTCTCTCTTCCAAAACA  250

seq1  TGAACTCTTCTTTAACCATCATGCCATGGCCAATATACTTCCATATCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTTCTTTAACCATCATGCCATGGCCAATATACTTCCATATCATT  300

seq1  TCTAAAATGCTCATTGAACCACCAAGAAGCCCACATGAACATACTGGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATGCTCATTGAACCACCAAGAAGCCCACATGAACATACTGGCCT  350

seq1  CTTTTTGAGTAGACCCTCCAGGCAACTATGTGCCCATGTCTTATGTAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGAGTAGACCCTCCAGGCAACTATGTGCCCATGTCTTATGTAGAT  400

seq1  GTCTGAATTGTCTTCAGAGGAAATGCTTCGTGTGTTGCATCTGCCAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAATTGTCTTCAGAGGAAATGCTTCGTGTGTTGCATCTGCCAAAAT  450

seq1  ATCATTACCTGGTCCTGATCTAATTCTAGAATTTATATCCCAAAGACCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACCTGGTCCTGATCTAATTCTAGAATTTATATCCCAAAGACCAG  500

seq1  AAAGTTCTAGAATAGGCTAATATTGGCTCATTGGCTCTGTTTTCCAGTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCTAGAATAGGCTAATATTGGCTCATTGGCTCTGTTTTCCAGTCC  550

seq1  ATCTTCTAAAATTGACTTTAGAAACAGCTTCCCCATTCTGATCTTGTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTAAAATTGACTTTAGAAACAGCTTCCCCATTCTGATCTTGTTGA  600

seq1  AGAACAACTGAATTC  613
      |||||||||||||||
seq2  AGAACAACTGAATTC  615