BAC Information

Click to search

BAC

Clone NameB6Ng01-341G19
Chromosome10 (Build37)
Map Location 11,521,851 - 11,635,927
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm1, Shprh, Fbxo30, Epm2a, EG666732, LOC100039343
Downstream geneUtrn, LOC665172
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341G19.bB6Ng01-341G19.g
ACCGA124808GA124809
length1,194978
definitionB6Ng01-341G19.b B6Ng01-341G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,521,851 - 11,522,712)(11,634,956 - 11,635,927)
sequence
gaattcagtaagaaggttatctattcagtaacattcaaatttacttcttg
tagagacagtgaaactaattaggcattacaaagaatggagccggaatagc
tcagggctggtctgcagagtgtttacttgagacaataaccagccttaccc
agacaagggaattcacaatggcctagtgaatagatgggtttagcatgaaa
gagttagggaaaccccctgagacaggtttcttcactaggcccaaagaaac
agcataaatcaggcatttactaagaacccctggtggtgcgcttaacaata
gactagcattacacctggctttcttcttagtggcagcggcctggtcccgc
cttcttttgatgtatacattccttatgtattgtgtcactgtaactcggtg
catgtatctctcctggtttcttgttattcttctgtataaaaagttagatg
ctcgactctaaaaattacattcagcttctacacaatctcctgtgttgtgt
ctgactgtcatttattcgctgactccttgtccatctgcaaccagagaccc
gttctatgcagacaagggaccaagggggtctgcagcaatagttaccagta
ataagagatagttactactaataagagatagttactactaataagagatg
gttaccacaaataagagatagttgccactaataagagatagttaccacca
ataagagatagttaccactaataagagatagatatttaccactaataaga
aacagttaccactaataagagatagttaccactaattctcaataagccac
taccccacaacattcattcatcacttggtgcttagatacctatgggccat
ataaattctccagctcatctataaaaacatatttatataaaatgatagtc
aacacatagatttaaagcaggaagacactaattaatgtttaaataataaa
agcacatttcatagaagttgtatggtgtcatggaatggtattatgttgta
tacaaagaagatctttcatcttaattttgggaagattttctggaggagca
aagacaatgcatgtgctacatcttgccacatttactgaaagttctgttga
catttttctgatcagtcctcaatgaaagatctgtaagctgtcacttgtgt
cctgtcacctagaaccttgtctgacacggcctagtaaattattg

gaattcaactctcagggtaatcccggtgagcaggcacagctgaagacaaa
tgccatagatgtttgccagcgtgggtaagataatgttactgagcataata
aaatcaaggcattgaattaattatttaaaatataaaataaaggttcagta
tatagctcggtggtagaaagtgcgccaaattctctatatgctatcgttac
ctccctttatatttctgcaatcaatatttttaacttttagaagagaagtt
aaccaaaatgaggagaaaaattgaagcaagaagtgtatataagaaaagca
caactgtggaaacacccagcagaagaatcttaccacccagccaaatgaga
acctttcagcatgtgttctactagtttcttcttttgaaccctgggttcaa
ccccaagcaggacaaaaaacaaacaaagcacgtgcttctcatgagtgtca
atgtaacattttgacagagtataattaatgtatcaatatttataagttct
aacaggattgtatatctttttatatgaatggtaccttaaagttatcttat
accattttattcgtttgctatatgcttctgtaggaggacagattgccaat
taaagcctaattaggtgattaaaaaaatggagatcaacatttagagatac
caatcacccaattaaacctaaagaaataagatggagaaaaaagtcaattg
atacaaagaaaagatgttttttctgtgttagaaataatagctgggagaag
ctaaggaggagggggaccctaaaggaagaccaacagtctcaagtgacctg
gactccgagatctctcagacactgagccaccaaccagggcagcatacacc
agctgatatgaggcccctacacatatacagcagaggactgtcatggtctg
gctccagtcagagaagatgcacctaaccctcaagagactgaagggcccca
gggtggtgggggaggtattggtggtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_11521851_11522712
seq2: B6Ng01-341G19.b_385_1239

seq1  CCTGGTCCCGCCTTCTTTTGATGTATACATTCCTTATGTATTGTGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCCCGCCTTCTTTTGATGTATACATTCCTTATGTATTGTGTCACT  50

seq1  GTAACTCGGTGCATGTATCTCTCCTGGTTTCTTGTTATTCTTCTGTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCGGTGCATGTATCTCTCCTGGTTTCTTGTTATTCTTCTGTATAA  100

seq1  AAAGTTAGATGCTCGACTCTAAAAATTACATTCAGCTTCTACACAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAGATGCTCGACTCTAAAAATTACATTCAGCTTCTACACAATCTC  150

seq1  CTGTGTTGTGTCTGACTGTCATTTATTCGCTGACTCCTTGTCCATCTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTGTCTGACTGTCATTTATTCGCTGACTCCTTGTCCATCTGCA  200

seq1  ACCAGAGACCCGTTCTATGCAGACAAGGGACCAAGGGGGTCTGCAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGACCCGTTCTATGCAGACAAGGGACCAAGGGGGTCTGCAGCAAT  250

seq1  AGTTACCAGTAATAAGAGATAGTTACTACTAATAAGAGATAGTTACTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCAGTAATAAGAGATAGTTACTACTAATAAGAGATAGTTACTACT  300

seq1  AATAAGAGATGGTTACCACAAATAAGAGATAGTTGCCACTAATAAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGATGGTTACCACAAATAAGAGATAGTTGCCACTAATAAGAGAT  350

seq1  AGTTACCACCAATAAGAGATAGTTACCACTAATAAGAGATAGATATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCACCAATAAGAGATAGTTACCACTAATAAGAGATAGATATTTAC  400

seq1  CACTAATAAGAAACAGTTACCACTAATAAGAGATAGTTACCACTAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAAGAAACAGTTACCACTAATAAGAGATAGTTACCACTAATTCT  450

seq1  CAATAAGCCACTACCCCACAACATTCATTCATCACTTGGTGCTTAGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGCCACTACCCCACAACATTCATTCATCACTTGGTGCTTAGATAC  500

seq1  CTATGGGCCATATAAATTCTCCAGCTCATCTATAAAAACATATTTATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTATGGGCCATATAAATTCTCCAGCTCATCTATAAAAACATATTTATAT-  549

seq1  AAAATGATAGTCAACACATAGATTTAAAGCAGGGAAGACACTAATTAATG  600
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAAATGATAGTCAACACATAGATTTAAAGCA-GGAAGACACTAATTAATG  598

seq1  TTTAAATAATAAAAGCACATTTCATAGAAGTTGTATGGTGTCATGGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAATAAAAGCACATTTCATAGAAGTTGTATGGTGTCATGGAATG  648

seq1  GTTATTATGTTGTATACAAAGAAGATCCTTTCATCTTAATTTTTGGGAGA  700
      | |||||||||||||||||||||||| |||||||||||||||| || |||
seq2  G-TATTATGTTGTATACAAAGAAGAT-CTTTCATCTTAATTTTGGGAAGA  696

seq1  -TATCTGGAGGAAGCAAAGACAAATGCATGTGCTACATC-TGCCACATTT  748
       | |||||||| ||||||||| ||||||||||||||||| ||||||||||
seq2  TTTTCTGGAGG-AGCAAAGAC-AATGCATGTGCTACATCTTGCCACATTT  744

seq1  AACTGAAAGTTCTGTTGACATTTTTCTGAATCAAGTCCTC-ATG-AAGAT  796
       ||||||||||||||||||||||||||| ||| ||||||| ||| |||||
seq2  -ACTGAAAGTTCTGTTGACATTTTTCTG-ATC-AGTCCTCAATGAAAGAT  791

seq1  TTGTAGCCTGGTCACTTTGTGTCTTGTCA-CTAGGACACCTGTCTGGACA  845
       ||||  || ||||| ||||||| ||||| |||| || | ||||| ||||
seq2  CTGTAAGCT-GTCAC-TTGTGTCCTGTCACCTAGAAC-CTTGTCT-GACA  837

seq1  -GCTAAAGTAAATTATTG  862
       |    ||||||||||||
seq2  CGGCCTAGTAAATTATTG  855


seq1: chr10_11634956_11635927
seq2: B6Ng01-341G19.g_70_1047 (reverse)

seq1  ACCACCACC-ATACCTCCCC--ACACCCTGGGG-CCTTCAGTCTCTTGAG  46
      | ||||||| ||||||||||   |||||||||| ||||||||||||||||
seq2  AACACCACCAATACCTCCCCCACCACCCTGGGGCCCTTCAGTCTCTTGAG  50

seq1  GGTTAGGTGCATCTTCTCTGACTGGAGCCAGACC-TGACAGTCCTCTGCT  95
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTTAGGTGCATCTTCTCTGACTGGAGCCAGACCATGACAGTCCTCTGCT  100

seq1  GTATATGTGTAGGGGCCTCATATCAGCTGGTGTATGCTG-CCTGGTTGGT  144
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTATATGTGTAGGGGCCTCATATCAGCTGGTGTATGCTGCCCTGGTTGGT  150

seq1  GGCTCAGTGTCTGAGAGATCTCGGAGTCCAGGTCACTTGAGACTGTTGGT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGTCTGAGAGATCTCGGAGTCCAGGTCACTTGAGACTGTTGGT  200

seq1  CTTCCTTTAGGGTCCCCCTCCTCCTTAGCTTCTCCCAGCTATTATTTCTA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTAGGGTCCCCCTCCTCCTTAGCTTCTCCCAGCTATTATTTCTA  250

seq1  ACACAGAAAAAACATCTTTTCTTTGTATCAATTGACTTTTTTCTCCATCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAAAACATCTTTTCTTTGTATCAATTGACTTTTTTCTCCATCT  300

seq1  TATTTCTTTAGGTTTAATTGGGTGATTGGTATCTCTAAATGTTGATCTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTAGGTTTAATTGGGTGATTGGTATCTCTAAATGTTGATCTCC  350

seq1  ATTTTTTTAATCACCTAATTAGGCTTTAATTGGCAATCTGTCCTCCTACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAATCACCTAATTAGGCTTTAATTGGCAATCTGTCCTCCTACA  400

seq1  GAAGCATATAGCAAACGAATAAAATGGTATAAGATAACTTTAAGGTACCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATATAGCAAACGAATAAAATGGTATAAGATAACTTTAAGGTACCA  450

seq1  TTCATATAAAAAGATATACAATCCTGTTAGAACTTATAAATATTGATACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAAAAAGATATACAATCCTGTTAGAACTTATAAATATTGATACA  500

seq1  TTAATTATACTCTGTCAAAATGTTACATTGACACTCATGAGAAGCACGTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATACTCTGTCAAAATGTTACATTGACACTCATGAGAAGCACGTG  550

seq1  CTTTGTTTGTTTTTTGTCCTGCTTGGGGTTGAACCCAGGGTTCAAAAGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTGTTTTTTGTCCTGCTTGGGGTTGAACCCAGGGTTCAAAAGAA  600

seq1  GAAACTAGTAGAACACATGCTGAAAGGTTCTCATTTGGCTGGGTGGTAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGTAGAACACATGCTGAAAGGTTCTCATTTGGCTGGGTGGTAAG  650

seq1  ATTCTTCTGCTGGGTGTTTCCACAGTTGTGCTTTTCTTATATACACTTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCTGCTGGGTGTTTCCACAGTTGTGCTTTTCTTATATACACTTCT  700

seq1  TGCTTCAATTTTTCTCCTCATTTTGGTTAACTTCTCTTCTAAAAGTTAAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAATTTTTCTCCTCATTTTGGTTAACTTCTCTTCTAAAAGTTAAA  750

seq1  AATATTGATTGCAGAAATATAAAGGGAGGTAACGATAGCATATAGAGAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGATTGCAGAAATATAAAGGGAGGTAACGATAGCATATAGAGAAT  800

seq1  TTGGCGCACTTTCTACCACCGAGCTATATACTGAACCTTTATTTTATATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGCACTTTCTACCACCGAGCTATATACTGAACCTTTATTTTATATT  850

seq1  TTAAATAATTAATTCAATGCCTTGATTTTATTATGCTCAGTAACATTATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATTAATTCAATGCCTTGATTTTATTATGCTCAGTAACATTATC  900

seq1  TTACCCACGCTGGCAAACATCTATGGCATTTGTCTTCAGCTGTGCCTGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCACGCTGGCAAACATCTATGGCATTTGTCTTCAGCTGTGCCTGCT  950

seq1  CACCGGGATTACCCTGAGAGTTGAATTC  972
      ||||||||||||||||||||||||||||
seq2  CACCGGGATTACCCTGAGAGTTGAATTC  978


| Home | SequenceCutter | Blast | Download |