BAC Information

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BAC

Clone NameB6Ng01-342H16
Chromosome10 (Build37)
Map Location 5,962,902 - 6,016,882
singlet/doubletdoublet
Overlap geneZbtb2, Akap12
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1
Downstream geneMthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H16.bB6Ng01-342H16.g
ACCGA125550GA125551
length794894
definitionB6Ng01-342H16.b B6Ng01-342H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,962,902 - 5,963,693)(6,015,992 - 6,016,882)
sequence
gaattccatatggctgaaacaattttcactaatgatgctgatcttatttt
tccagtgtgttagcattgggaaactttcataattcattgagctgatattt
tccaaatgaccactagataatgattaaaaaaaaaaaggcatatgagtgca
tggcttagcaggtagagggcacattccacattcggccatgtctgataacc
tgagtcccaccctagaactcacgtatgggggagggggaagcctgcactgt
catctaacctccaaatactcacaaagaggcacaggcaggcaggcatgctt
ttgcacacacacagggcatgtgattttaaagcaagaggcgagctatttaa
ggtgataaagagccatcaaagagggcggagggaggcaggtgaaggtggta
agggagcaaacattattagcacaaggtggtcggtgacatagctgtgaaaa
tgccatggaacccgttagtctttagaaactcattccagttaaagtacagg
agtctgagttgagacctggaggtggtgtaaaaggggaggttgtgttgtca
cttctgctggtgtaatcctttgttggttttgtttcagttgaccgctgcat
agcttttagaattgtcactagtgtctcaagcttgacttctctgaaatgca
gcatgtcccagtagtccagtaaagtgctgctgcattgttctcgcctctcc
ttctgtaattactacggaagaggagttgggaaaggaaaaaagatgtattt
cctacctctgacctcaatttcctaaaatacattgatatccagat

gaattcaaggccagcctggtatgtcagaacagacaagcaggaaaccagca
aacccaaagtggtaggaagtcagtgtgtattcaccttgcagttgttggtg
gtcccttgcagtgtgcattgtgcaagactgtgcacattacgcatggaggc
cacagatgctcagccaccaggtaataatagccctgtaccccaaaggatct
tggcaacccttttctgctcccaaacagcagtgtgccctagaccacaacgt
ccacagttgatactagcagggactgactgcccccagaccgagatctctca
gtgagtcacaggcttaggggaagccttccctttccatgtgtgatccgcct
cccctctctctggttttctttagctgtgctatgtctgtgtgtcatttttt
ccccattgtgacaaaatgttattatcttagctttttgtggattggggttg
agatttttaagttttcttctatgtgtatgggtgtttggtctgcatatata
cctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgcg
cgtgtgcacgtgtgtatacatgcgcgtgcctgatgtcttcagaggacatt
tatcaggtcctctggaactgaagttatagacagttgtgcacagcctcata
gggtgtgagaactgaacctgggtccagcccccacaaactccattttaatc
actgctatttccttacacagaaccacttactacagtgtaagacccactat
acttgtttcagcctgttgttagttggtgggcacactaaagttgtttttta
aagacacagctttacacttttgttcttaacgtcagtacgaatgggtccag
ggttctcctctgattggtgttctcatgctcttgggtgcatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_5962902_5963693
seq2: B6Ng01-342H16.b_47_840

seq1  GAATTCCATATGGCTGAAACAATTTTCACTAATGATGCTGATCTTATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATGGCTGAAACAATTTTCACTAATGATGCTGATCTTATTTT  50

seq1  TCCAGTGTGTTAGCATTGGGAAACTTTCATAATTCATTGAGCTGATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTGTTAGCATTGGGAAACTTTCATAATTCATTGAGCTGATATTT  100

seq1  TCCAAATGACCACTAGATAATGATTAAAAAAAAAAAGGCATATGAGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGACCACTAGATAATGATTAAAAAAAAAAAGGCATATGAGTGCA  150

seq1  TGGCTTAGCAGGTAGAGGGCACATTCCACATTCGGCCATGTCTGATAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGCAGGTAGAGGGCACATTCCACATTCGGCCATGTCTGATAACC  200

seq1  TGAGTCCCACCCTAGAACTCACGTATGGGGGAGGGGGAAGCCTGCACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCACCCTAGAACTCACGTATGGGGGAGGGGGAAGCCTGCACTGT  250

seq1  CATCTAACCTCCAAATACTCACAAAGAGGCACAGGCAGGCAGGCATGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAACCTCCAAATACTCACAAAGAGGCACAGGCAGGCAGGCATGCTT  300

seq1  TTGCACACACACAGGGCATGTGATTTTAAAGCAAGAGGCGAGCTATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACACACAGGGCATGTGATTTTAAAGCAAGAGGCGAGCTATTTAA  350

seq1  GGTGATAAAGAGCCATCAAAGAGGGCGGAGGGAGGCAGGTGAAGGTGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAAAGAGCCATCAAAGAGGGCGGAGGGAGGCAGGTGAAGGTGGTA  400

seq1  AGGGAGCAAACATTATTAGCACAAGGTGGTCGGTGACATAGCTGTGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCAAACATTATTAGCACAAGGTGGTCGGTGACATAGCTGTGAAAA  450

seq1  TGCCATGGAACCCGTTAGTCTTTAGAAACTCATTCCAGTTAAAGTACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGGAACCCGTTAGTCTTTAGAAACTCATTCCAGTTAAAGTACAGG  500

seq1  AGTCTGAGTTGAGACCTGGAGGTGGTGTAAAAGGGGAGGTTGTGTTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGTTGAGACCTGGAGGTGGTGTAAAAGGGGAGGTTGTGTTGTCA  550

seq1  CTTCTGCTGGTGTAATCCTTTGTTGGTTTTGTTTCAGTTGACCGCTGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGGTGTAATCCTTTGTTGGTTTTGTTTCAGTTGACCGCTGCAT  600

seq1  AGCTTTTAGAATTGTCACTAGTGTCTCAAGCTTGACTTCTCTGAAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTAGAATTGTCACTAGTGTCTCAAGCTTGACTTCTCTGAAATGCA  650

seq1  GCATGTCCCAGTAGTCCAGT-AAGTGCTGCTGCATTGTTCTCGCCTCTCC  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCATGTCCCAGTAGTCCAGTAAAGTGCTGCTGCATTGTTCTCGCCTCTCC  700

seq1  TTCTGTAATTACTACGGAAGAGGAGTTGGGAAAGGAAAAAAGATGTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATTACTACGGAAGAGGAGTTGGGAAAGGAAAAAAGATGTATTT  750

seq1  CCTACCTCTGACCTCAATTT-CTAAAATACATTGAAATCCAGAT  792
      |||||||||||||||||||| |||||||||||||| ||||||||
seq2  CCTACCTCTGACCTCAATTTCCTAAAATACATTGATATCCAGAT  794


seq1: chr10_6015992_6016882
seq2: B6Ng01-342H16.g_65_958 (reverse)

seq1  AAATATGCACCCAAGAGCATGAGAACACACAATCAGAGGAGAA-CCTGGA  49
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  AAATATGCACCCAAGAGCATGAGAACAC-CAATCAGAGGAGAACCCTGGA  49

seq1  -CCATTCGTACTGACGTTAGGAAC-AAAGTGTAAAGCTGTGTCTTT-AAA  96
       |||||||||||||||||| |||| ||||||||||||||||||||| |||
seq2  CCCATTCGTACTGACGTTAAGAACAAAAGTGTAAAGCTGTGTCTTTAAAA  99

seq1  AACAACTTTAGTGTGCCCACCAACTAACAACAGGCTGAAACAAGTATAGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTTAGTGTGCCCACCAACTAACAACAGGCTGAAACAAGTATAGT  149

seq1  GGGTCTTACACTGTAGTAAGTGGTTCTGTGTAAGGAAATAGCAGTGATTA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTACACTGTAGTAAGTGGTTCTGTGTAAGGAAATAGCAGTGATTA  199

seq1  AAATGGAGTTTGTGGGGGCTGGACCCAGGTTCAGTTCTCACACCCTATGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGTTTGTGGGGGCTGGACCCAGGTTCAGTTCTCACACCCTATGA  249

seq1  GGCTGTGCACAACTGTCTATAACTTCAGTTCCAGAGGACCTGATAAATGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGCACAACTGTCTATAACTTCAGTTCCAGAGGACCTGATAAATGT  299

seq1  CCTCTGAAGACATCAGGCACGCGCATGTATACACACGTGCACACGCGCGC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAGACATCAGGCACGCGCATGTATACACACGTGCACACGCGCGC  349

seq1  GCGCGCGCGCACACACACACACACACACACACACACACACAGAGGTATAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGCGCGCACACACACACACACACACACACACACACACAGAGGTATAT  399

seq1  ATGCAGACCAAACACCCATACACATAGAAGAAAACTTAAAAATCTCAACC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACCAAACACCCATACACATAGAAGAAAACTTAAAAATCTCAACC  449

seq1  CCAATCCACAAAAAGCTAAGATAATAACATTTTGTCACAATGGGGAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCACAAAAAGCTAAGATAATAACATTTTGTCACAATGGGGAAAAA  499

seq1  ATGACACACAGACATAGCACAGCTAAAGAAAACCAGAGAGAGGGGAGGCG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACACACAGACATAGCACAGCTAAAGAAAACCAGAGAGAGGGGAGGCG  549

seq1  GATCACACATGGAAAGGGAAGGCTTCCCCTAAGCCTGTGACTCACTGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACACATGGAAAGGGAAGGCTTCCCCTAAGCCTGTGACTCACTGAGA  599

seq1  GATCTCGGTCTGGGGGCAGTCAGTCCCTGCTAGTATCAACTGTGGACGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCGGTCTGGGGGCAGTCAGTCCCTGCTAGTATCAACTGTGGACGTT  649

seq1  GTGGTCTAGGGCACACTGCTGTTTGGGAGCAGAAAAGGGTTGCCAAGATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTAGGGCACACTGCTGTTTGGGAGCAGAAAAGGGTTGCCAAGATC  699

seq1  CTTTGGGGTACAGGGCTATTATTACCTGGTGGCTGAGCATCTGTGGCCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGGTACAGGGCTATTATTACCTGGTGGCTGAGCATCTGTGGCCTC  749

seq1  CATGCGTAATGTGCACAGTCTTGCACAATGCACACTGCAAGGGACCACCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGTAATGTGCACAGTCTTGCACAATGCACACTGCAAGGGACCACCA  799

seq1  ACAACTGCAAGGTGAATACACACTGACTTCCTACCACTTTGGGTTTGCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGCAAGGTGAATACACACTGACTTCCTACCACTTTGGGTTTGCTG  849

seq1  GTTTCCTGCTTGTCTGTTCTGACATACCAGGCTGGCCTTGAATTC  891
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTGCTTGTCTGTTCTGACATACCAGGCTGGCCTTGAATTC  894


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