BAC Information

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BAC

Clone NameB6Ng01-343M18
Chromosome10 (Build37)
Map Location 3,971,021 - 4,077,027
singlet/doubletdoublet
Overlap geneLOC100041224
Upstream geneCnksr3, Oprm1, A130090K04Rik, LOC237252
Downstream geneRgs17, Mtrf1l, Fbxo5, LOC666395, Vip, Myct1, Syne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343M18.bB6Ng01-343M18.g
ACCGA126477GA126478
length1,1771,139
definitionB6Ng01-343M18.b B6Ng01-343M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,971,021 - 3,972,199)(4,075,891 - 4,077,027)
sequence
gaattctttgggggatttaattctactggttgcttagctacttcagctct
caacggcctccaaagtattagttgttagagttatttagttttctttattg
tttgagtagatgaaacgcttcacatccttccccatcctcagccatacatt
aactatcttgtctatacactacaggggcaccactttcttctcctgtgtca
ttcgcttgcgttttctctctttttgccttggtgagactttgtataaattt
atcaatttcattattatcttttgaaaagtaattttggcttcattcatttc
ttctatattccactgattttgtcttcctatacatttcccttccattcttt
tgtcctgaagtgattcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttttaagattttagagttgtaagcaatatgttgactttaatttcttctgc
tcctattataaaactgaggagagttaagagaaaggcaaacccacgggatg
caggtagaaccatgggatgcagtcagggccatgggaagcagaatgtctag
ttattcaaatgaggctgaaagtcatctataagaacattggcttttaaaaa
attacccaatcagtcacaaagcatggtttcccaaggtctcagctaacagc
cagtccttcgttttactttcctgttcttcctccccttggaaaatgttggt
ggctgcccactacctgcccctgccagcatgacatcaccaatgtgtaggct
ttcttaagactacattcacactttcacccaacccttggccaatgaaaatc
cttgctccctaatatttaaagtaaccttctatatctagttctatcttgat
ttccagtttacctgcaggacattggccttttccctgagtatattgatccc
ttgtgcttgacgttacttggcaactcatttttgagacctatagaaatttt
tcctcttatagagttgctgctctgtttctctaaagaaattttgcttgctt
gcttacctttcctctaggttcctgctcattgttcttcagacatgactcag
aaaggccctggatcagcctaaaccactaaccacttgaattctaagaaaga
tttccattgccctcaacctcacaatga

gaattcccttctaagcctgcagaaccactacaattgacccacaaaattga
tacagcctctatagattggtgagtgtaataacattaaagaatcatagtca
tcacagatgatatgtgaaaagcttctgataaaactcaattcatttttatg
gtttcacaaaacccagcgaaacagaaggaaaatgcatggacatcattgaa
gccctataggaaaaactcaacatgatactcagagatgagggacttagaga
ttttgcctgacaaggatgcttgctcttatagattacattcagcatcatga
ggggagttctagacagagaaagcacacaagaagaagacattcaatttata
aatgaagaaaactatctcaacttgtagatggtgtggttatatatagttct
tgtttctctatgtactcataagaaaaatgtgaatatttttgcctatagtt
gaatgataaaaaaataaataaattctgagccacaggggaaaaactaacat
attcaggtttgcagttagaattatgaagattccttccacatatttatctc
ttggtgaacatgctatagcacagaacacaagtttgaacaagttcaaactg
tatcatctcactggagaagcaatctcttggctccaaaaacccagtcatca
actttgtcagtttcagttatatggctttgcatataagctttgcctcagac
agggcaagcttaaggaagacagtgctgttgaaagcttcagtcctgttaca
gcctacatgccaagacacatgtttccaaaaggttatagctgaaaatatac
ttaaagatccctgaagcttggggctggagagatggctcagcaattaaaga
gcacttaatattcatacagaggtcttgcattcagctgccagtacccacat
catctggctcacatccattccagggaacaagatgctctctgaccatcaca
ggcaccgggaacttgtgttgtacacacaaactcatacagttaagcacaga
tatacacaggttttctaatattaaaaattcaaaggttataatgttgtcta
agcagagtggaagaagtagaagaaaaagcgagagaagagaactgggcagc
agaaagaacacaggcccaccattcacaggcagctgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3971021_3972199
seq2: B6Ng01-343M18.b_49_1225

seq1  GAATTCTTTGGGGGATTTAATTCTACTGGTTGCTTAGCTACTTCAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGGGATTTAATTCTACTGGTTGCTTAGCTACTTCAGCTCT  50

seq1  CAACGGCCTCCAAAGTATTAGTTGTTAGAGTTATTTAGTTTTCTTTATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGGCCTCCAAAGTATTAGTTGTTAGAGTTATTTAGTTTTCTTTATTG  100

seq1  TTTGAGTAGATGAAACGCTTCACATCCTTCCCCATCCTCAGCCATACATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAGATGAAACGCTTCACATCCTTCCCCATCCTCAGCCATACATT  150

seq1  AACTATCTTGTCTATACACTACAGGGGCACCACTTTCTTCTCCTGTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCTTGTCTATACACTACAGGGGCACCACTTTCTTCTCCTGTGTCA  200

seq1  TTCGCTTGCGTTTTCTCTCTTTTTGCCTTGGTGAGACTTTGTATAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTTGCGTTTTCTCTCTTTTTGCCTTGGTGAGACTTTGTATAAATTT  250

seq1  ATCAATTTCATTATTATCTTTTGAAAAGTAATTTTGGCTTCATTCATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCATTATTATCTTTTGAAAAGTAATTTTGGCTTCATTCATTTC  300

seq1  TTCTATATTCCACTGATTTTGTCTTCCTATACATTTCCCTTCCATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATTCCACTGATTTTGTCTTCCTATACATTTCCCTTCCATTCTTT  350

seq1  TGTCCTGAAGTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAAGTGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  400

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  450

seq1  TTTTAAGATTTTAGAGTTGTAAGCAATATGTTGACTTTAATTTCTTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTTTAGAGTTGTAAGCAATATGTTGACTTTAATTTCTTCTGC  500

seq1  TCCTATTATAAAACTGAGGAGAGTTAAGAGAAAGGCAAACCCACGGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTATAAAACTGAGGAGAGTTAAGAGAAAGGCAAACCCACGGGATG  550

seq1  CAGGTAGAACCATGGGATGCAGTCAGGGCCATGGGAAGCAGAATGTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAACCATGGGATGCAGTCAGGGCCATGGGAAGCAGAATGTCTAG  600

seq1  TTATTCAAATGAGGCTGAAAGTCATCTATAAGAACATTGGCTTTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAATGAGGCTGAAAGTCATCTATAAGAACATTGGCTTTTAAAAA  650

seq1  ATTACCCAATCAGTCACAAAGCATGGTTTCCCAAGGTCTCAGCTAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCAATCAGTCACAAAGCATGGTTTCCCAAGGTCTCAGCTAACAGC  700

seq1  CAGTCCTTCGTTTTACTTTCCTGTTCTTCCTCCCCTTGGAAAATGTTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTTCGTTTTACTTTCCTGTTCTTCCTCCCCTTGGAAAATGTTGGT  750

seq1  GGCTGCCCACTACCTGCCCCTGCCAGCATGACATCACCAATGTGTAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCACTACCTGCCCCTGCCAGCATGACATCACCAATGTGTAGGCT  800

seq1  TTCTTAAGACTACATTCACACTTTCACCCAACCCTTGGCCAATGAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGACTACATTCACACTTTCACCCAACCCTTGGCCAATGAAAATC  850

seq1  CTTGCTCCCTAATATTTAAAGTAACCTTCTATATCTAG-TCTATCTTGAT  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTGCTCCCTAATATTTAAAGTAACCTTCTATATCTAGTTCTATCTTGAT  900

seq1  TTCCAGTTTACCTGCAGGACATTGGCCTTTTCCCTGAGTATATTGATCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTTACCTGCAGGACATTGGCCTTTTCCCTGAGTATATTGATCCC  950

seq1  TTGTGCTTGACGTTACTTGGCAACTCATTTTTGAGACCTATAGAAATTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTTGACGTTACTTGGCAACTCATTTTTGAGACCTATAGAAATTTT  1000

seq1  TCCTCTTATAGGAAGTTGCTGCTCTGTTTCTCTAAAAGAAATTTTGCTTG  1049
      |||||||||||  |||||||||||||||||||| ||||||||||||||||
seq2  TCCTCTTATAG--AGTTGCTGCTCTGTTTCTCT-AAAGAAATTTTGCTTG  1047

seq1  CTTGCTTACCTTTCCTCTAGGGTCCTTGCTCATTGTTCTTCAGGACCATG  1099
      ||||||||||||||||||||| ||| |||||||||||||||||   ||||
seq2  CTTGCTTACCTTTCCTCTAGGTTCC-TGCTCATTGTTCTTCAG--ACATG  1094

seq1  ACTCAG-AAGCCCCTGGATCAGCTAAACCCACTAAACCCACT--GATCCT  1146
      |||||| ||| ||||||||||||  || |||||||  |||||   || ||
seq2  ACTCAGAAAGGCCCTGGATCAGCCTAAACCACTAA--CCACTTGAATTCT  1142

seq1  AAGAAAGA-TTCCATTGCACTCAACCT-ACAATGA  1179
      |||||||| ||||||||| |||||||| |||||||
seq2  AAGAAAGATTTCCATTGCCCTCAACCTCACAATGA  1177


seq1: chr10_4075891_4077027
seq2: B6Ng01-343M18.g_71_1209 (reverse)

seq1  TCAGCAGCTG-CTGTGGATGTTGGGGCCCTGTGT--CTTCTGCTGCCCAG  47
      |||||||||| ||||| ||| ||||  |||||||   |||||||||||||
seq2  TCAGCAGCTGCCTGTGAATGGTGGG--CCTGTGTTCTTTCTGCTGCCCAG  48

seq1  TTCTCTCTCT-TCGCTTTTTCTCTAACTTCTTCCACTCTGCTTAGACAAC  96
      |||||| ||| |||||||||||   |||||||||||||||||||||||||
seq2  TTCTCT-TCTCTCGCTTTTTCTTCTACTTCTTCCACTCTGCTTAGACAAC  97

seq1  ATTATAA-CTTTGAATTTTTAATAATTAAGAAAACTGTGTATATCTGTGC  145
      ||||||| ||||||||||||||| ||||  ||| ||||||||||||||||
seq2  ATTATAACCTTTGAATTTTTAAT-ATTAGAAAACCTGTGTATATCTGTGC  146

seq1  TTAACTGTATGAGTTTGTGTGTACAACACAAGTT-CCGGTGCCTGTGATG  194
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAACTGTATGAGTTTGTGTGTACAACACAAGTTCCCGGTGCCTGTGATG  196

seq1  GTCAGAGAGCATCTTGTTCCCTGGAATGGATGTGAGCCAGATGATGTGGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGCATCTTGTTCCCTGGAATGGATGTGAGCCAGATGATGTGGG  246

seq1  TACTGGCAGCTGAATGCAAGACCTCTGTATGAATATTAAGTGCTCTTTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCAGCTGAATGCAAGACCTCTGTATGAATATTAAGTGCTCTTTAA  296

seq1  TTGCTGAGCCATCTCTCCAGCCCCAAGCTTCAGGGATCTTTAAGTATATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGCCATCTCTCCAGCCCCAAGCTTCAGGGATCTTTAAGTATATT  346

seq1  TTCAGCTATAACCTTTTGGAAACATGTGTCTTGGCATGTAGGCTGTAACA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTATAACCTTTTGGAAACATGTGTCTTGGCATGTAGGCTGTAACA  396

seq1  GGACTGAAGCTTTCAACAGCACTGTCTTCCTTAAGCTTGCCCTGTCTGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAGCTTTCAACAGCACTGTCTTCCTTAAGCTTGCCCTGTCTGAG  446

seq1  GCAAAGCTTATATGCAAAGCCATATAACTGAAACTGACAAAGTTGATGAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTATATGCAAAGCCATATAACTGAAACTGACAAAGTTGATGAC  496

seq1  TGGGTTTTTGGAGCCAAGAGATTGCTTCTCCAGTGAGATGATACAGTTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTTGGAGCCAAGAGATTGCTTCTCCAGTGAGATGATACAGTTTG  546

seq1  AACTTGTTCAAACTTGTGTTCTGTGCTATAGCATGTTCACCAAGAGATAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTTCAAACTTGTGTTCTGTGCTATAGCATGTTCACCAAGAGATAA  596

seq1  ATATGTGGAAGGAATCTTCATAATTCTAACTGCAAACCTGAATATGTTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGAAGGAATCTTCATAATTCTAACTGCAAACCTGAATATGTTAG  646

seq1  TTTTTCCCCTGTGGCTCAGAATTTATTTATTTTTTTATCATTCAACTATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCCTGTGGCTCAGAATTTATTTATTTTTTTATCATTCAACTATA  696

seq1  GGCAAAAATATTCACATTTTTCTTATGAGTACATAGAGAAACAAGAACTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAATATTCACATTTTTCTTATGAGTACATAGAGAAACAAGAACTA  746

seq1  TATATAACCACACCATCTACAAGTTGAGATAGTTTTCTTCATTTATAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACCACACCATCTACAAGTTGAGATAGTTTTCTTCATTTATAAAT  796

seq1  TGAATGTCTTCTTCTTGTGTGCTTTCTCTGTCTAGAACTCCCCTCATGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCTTCTTCTTGTGTGCTTTCTCTGTCTAGAACTCCCCTCATGAT  846

seq1  GCTGAATGTAATCTATAAGAGCAAGCATCCTTGTCAGGCAAAATCTCTAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGTAATCTATAAGAGCAAGCATCCTTGTCAGGCAAAATCTCTAA  896

seq1  GTCCCTCATCTCTGAGTATCATGTTGAGTTTTTCCTATAGGGCTTCAATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCATCTCTGAGTATCATGTTGAGTTTTTCCTATAGGGCTTCAATG  946

seq1  ATGTCCATGCATTTTCCTTCTGTTTCGCTGGGTTTTGTGAAACCATAAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATGCATTTTCCTTCTGTTTCGCTGGGTTTTGTGAAACCATAAAA  996

seq1  ATGAATTGAGTTTTATCAGAAGCTTTTCACATATCATCTGTGATGACTAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTGAGTTTTATCAGAAGCTTTTCACATATCATCTGTGATGACTAT  1046

seq1  GATTCTTTAATGTTATTACACTCACCAATCTATAGAGGCTGTATCAATTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTAATGTTATTACACTCACCAATCTATAGAGGCTGTATCAATTT  1096

seq1  TGTGGGTCAATTGTAGTGGTTCTGCAGGCTTAGAAGGGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTCAATTGTAGTGGTTCTGCAGGCTTAGAAGGGAATTC  1139


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