BAC Information

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BAC

Clone NameB6Ng01-344I09
Chromosome10 (Build37)
Map Location 117,985,770 - 118,112,280
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng
Downstream geneLOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344I09.bB6Ng01-344I09.g
ACCGA126986GA126987
length4001,127
definitionB6Ng01-344I09.b B6Ng01-344I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,111,898 - 118,112,280)(117,985,770 - 117,986,898)
sequence
gaattcactaatattattaataaagttgcattaaaaaatctcaccagtgg
gagtgattaaatcatccccagtcctgggacatgtaagatcagctcatcct
tggcagaaacgagccacccatttggactcatcattttccccagagctcat
tagatttccgtgaagcctttatgaattagacaactaaggtttatttttct
ctttcaacttttctctcaacttcccatcgtgatttatcttcagaaatctc
cttgatatgtttttggcttttagagttctgttctttctctttttttaata
ttgagaaacagggaattatatatatatatatatatatatatatatatata
tatatatatatatatacatatatatatatatatatatatatatatatata

gaattctttgtgtggtactaatatttgtattttgtgtctgggtagatgta
ctttgcattttaaaaaaagtttatcaactctttttgactttgcttatgat
cttttctgttatacagaaaacaaatctatttgtgtttagtcagatctatg
ttttcataaaacgtctctgggtcatgagacattgctaagaatttgctcct
tacacacaggaatttattcatgctttctcccgggagttttaatttttatc
tgtatatctcagttacattctggatcatgcttacatatggcatgatgtgt
gctctgatcttattttgttctaatggatactgaattacccctgagccatc
ccttgatttatttttctcctagtacatttgtgatgccacttttattatgt
tctgttctacgcttccaaatgtactggaatctagttctgtgctttctgat
ccactcacagagtctccgtatccagccttccaccagcaccatactgtttt
aaagctttttttttccctgagacagggtttctctgtgtagccctagctgt
cctggaactcactctgtagaccaggctggccttgaactcagaaatctgcc
tgcctcctaagtgctgggatgaaaggcatgcgccaccactgcccagcttc
atactgttttaatcacaaggactttatagagtattttaatgtctggtata
gccagtctttcctatgttctttctagtattttattggctatttggggatt
tttggttgtttgtttctccacatgttttggacatgagtgtgtttacttct
atataaagactgattcatattttattgagatgtagtcagatttatgcact
gaacagagtcaacattcatgagatgaagccatgcttcataatgccttgaa
acacctttgtgtcagtccagattcactctgacatttctcatggctgtttt
tgtctcacgtagttttccagagttattgtacttttaaatatgatcctaag
tatttcgtcttcttcacctgtattgtaaataagtttttctgttacggctt
ttctaatgaatgtgtggtgtgtgtggtgtgtagccacgtatgttaaatac
taaatactatcctgatgtaaatatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_118111898_118112280
seq2: B6Ng01-344I09.b_44_424 (reverse)

seq1  ATATATATATATATGTATATATATATATATATATATATATATATATATAT  50
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  ATATATATATATATG--TATATATATATATATATATATATATATATATAT  48

seq1  ATATATATATATATATAATTCCCTGTTTCTCAATATTAAAAAAAGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATAATTCCCTGTTTCTCAATATTAAAAAAAGAGAAA  98

seq1  GAACAGAACTCTAAAAGCCAAAAACATATCAAGGAGATTTCTGAAGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACTCTAAAAGCCAAAAACATATCAAGGAGATTTCTGAAGATAA  148

seq1  ATCACGATGGGAAGTTGAGAGAAAAGTTGAAAGAGAAAAATAAACCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGATGGGAAGTTGAGAGAAAAGTTGAAAGAGAAAAATAAACCTTAG  198

seq1  TTGTCTAATTCATAAAGGCTTCACGGAAATCTAATGAGCTCTGGGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAATTCATAAAGGCTTCACGGAAATCTAATGAGCTCTGGGGAAAA  248

seq1  TGATGAGTCCAAATGGGTGGCTCGTTTCTGCCAAGGATGAGCTGATCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGTCCAAATGGGTGGCTCGTTTCTGCCAAGGATGAGCTGATCTTA  298

seq1  CATGTCCCAGGACTGGGGATGATTTAATCACTCCCACTGGTGAGATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCCAGGACTGGGGATGATTTAATCACTCCCACTGGTGAGATTTTT  348

seq1  TAATGCAACTTTATTAATAATATTAGTGAATTC  383
      |||||||||||||||||||||||||||||||||
seq2  TAATGCAACTTTATTAATAATATTAGTGAATTC  381

seq1: chr10_117985770_117986898
seq2: B6Ng01-344I09.g_64_1190

seq1  GAATTCTTTGTGTGGTACTAATATTTGTATTTTGTGTCTGGGTAGATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGTGGTACTAATATTTGTATTTTGTGTCTGGGTAGATGTA  50

seq1  CTTTGCATTTTAAAAAAAGTTTATCAACTCTTTTTGACTTTGCTTATGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATTTTAAAAAAAGTTTATCAACTCTTTTTGACTTTGCTTATGAT  100

seq1  CTTTTCTGTTATACAGAAAACAAATCTATTTGTGTTTAGTCAGATCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGTTATACAGAAAACAAATCTATTTGTGTTTAGTCAGATCTATG  150

seq1  TTTTCATAAAACGTCTCTGGGTCATGAGACATTGCTAAGAATTTGCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAAAACGTCTCTGGGTCATGAGACATTGCTAAGAATTTGCTCCT  200

seq1  TACACACAGGAATTTATTCATGCTTTCTCCCGGGAGTTTTAATTTTTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGGAATTTATTCATGCTTTCTCCCGGGAGTTTTAATTTTTATC  250

seq1  TGTATATCTCAGTTACATTCTGGATCATGCTTACATATGGCATGATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCTCAGTTACATTCTGGATCATGCTTACATATGGCATGATGTGT  300

seq1  GCTCTGATCTTATTTTGTTCTAATGGATACTGAATTACCCCTGAGCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATCTTATTTTGTTCTAATGGATACTGAATTACCCCTGAGCCATC  350

seq1  CCTTGATTTATTTTTCTCCTAGTACATTTGTGATGCCACTTTTATTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTTATTTTTCTCCTAGTACATTTGTGATGCCACTTTTATTATGT  400

seq1  TCTGTTCTACGCTTCCAAATGTACTGGAATCTAGTTCTGTGCTTTCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTACGCTTCCAAATGTACTGGAATCTAGTTCTGTGCTTTCTGAT  450

seq1  CCACTCACAGAGTCTCCGTATCCAGCCTTCCACCAGCACCATACTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACAGAGTCTCCGTATCCAGCCTTCCACCAGCACCATACTGTTTT  500

seq1  AAAGCTTTTTTTTTCCCTGAGACAGGGTTTCTCTGTGTAGCCCTAGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTTTTTTTCCCTGAGACAGGGTTTCTCTGTGTAGCCCTAGCTGT  550

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCC  600

seq1  TGCCTCCTAAGTGCTGGGATGAAAGGCATGCGCCACCACTGCCCAGCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTAAGTGCTGGGATGAAAGGCATGCGCCACCACTGCCCAGCTTC  650

seq1  ATACTGTTTTAATCACAAGGACTTTATAGAGTATTTTAATGTCTGGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTTTAATCACAAGGACTTTATAGAGTATTTTAATGTCTGGTATA  700

seq1  GCCAGTCTTTCCTATGTTCTTTCTAGTATTTTATTGGCTATTTGGGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCTTTCCTATGTTCTTTCTAGTATTTTATTGGCTATTTGGGGATT  750

seq1  TTTGGTTGTTTGTTTCTCCACATGTTTTGGACATGAGTGTGTTTACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGTTTGTTTCTCCACATGTTTTGGACATGAGTGTGTTTACTTCT  800

seq1  ATATAAAGACTGATTCATATTTTATTGAGATGTAGTCAGATTTATGCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGACTGATTCATATTTTATTGAGATGTAGTCAGATTTATGCACT  850

seq1  GAACAGAGTCAACATTCATGAGATGAAGCCATGCTTCATAATGCCTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGTCAACATTCATGAGATGAAGCCATGCTTCATAATGCCTTGAA  900

seq1  ACACCTTTGTGTCAGTCCAGATTCACTCTGACATTTCTCATGGCTGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTGTGTCAGTCCAGATTCACTCTGACATTTCTCATGGCTGTTTT  950

seq1  TGTCTCACGTAGTTTTCCAGAGTTTATGTACTTTTAAATATGATCCTAAG  1000
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  TGTCTCACGTAGTTTTCCAGAGTTATTGTACTTTTAAATATGATCCTAAG  1000

seq1  TATTTCGTCTTCTTCACTGTTATTGTAAATAAGGGTTTTTCTGTTACCGG  1050
      |||||||||||||||||   ||||||||||||  |||||||||||| |||
seq2  TATTTCGTCTTCTTCACCTGTATTGTAAATAA--GTTTTTCTGTTA-CGG  1047

seq1  GTTTTCTAATGAATTGTGT-GTGTGTGT-GTGTGTAAGCACGTATG-TAA  1097
       |||||||||||| ||||| |||||||| |||||||  |||||||| |||
seq2  CTTTTCTAATGAA-TGTGTGGTGTGTGTGGTGTGTAGCCACGTATGTTAA  1096

seq1  ATACTAAATACTAATCCTGTATGT-AATATTTT  1129
      |||||||||||| |||||| |||| ||||||||
seq2  ATACTAAATACT-ATCCTG-ATGTAAATATTTT  1127