BAC Information

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BAC

Clone NameB6Ng01-344P08
Chromosome10 (Build37)
Map Location 65,853,271 - 65,939,136
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665206, LOC216036, 1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344P08.bB6Ng01-344P08.g
ACCGA127309GA127310
length1,1521,118
definitionB6Ng01-344P08.b B6Ng01-344P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,937,993 - 65,939,136)(65,853,271 - 65,854,237)
sequence
gaattcaagtctcgagacgcgccgatccgtgcttttttattagtatgtga
ataaatgtataaggaattttattatactcatttgatcatgggtaaatgac
catgaaaaacccacacaacgcagaatactagccataggtctcctgggaag
aaaggtagtgacttcctaagagtgtgtaaagaccaacaggtgctaagatt
ttgtgttgacccattaaatttttattggcttcatagcttttcagagtttc
ctgtgtctgcccttgccactgcctaaaagctgcaggctggaaataatcaa
ggtttcatgcatatgctaagtggataagaggattaaagtaagaacaaaca
agatactagatagttccaggctagctcttgcattgccggttgtttaatgc
aacccacagatcagcattcttttgttgttaagggcaaataccaaataagc
agaggacagtttctgctttgttgtggcccttggagacttgggagagaccc
tcatactacagtattcccaccagctctaggtaactgagtggttgcaaatt
gactctattttgaccttcactgtgccattgtagaataacagtggcatcat
gaggaatgctgctgctactccttctgatgctcctgcagatgtggatgctg
gagcaatgtagctgtagatgcaaagcagaaaatacagacaaagcctccca
ggctattatatccaggctataccagggaagtggatgaagtgggtcaacat
taatcctaatatgggtgtaaatgtttgacgtatttttaatggcctttata
gctgggccacatgtttctattatagtagccactggtatatcatagaaacc
ttggctctttaaccttcctgtagcattgcaagatgcagctgttagggtcc
aggaagcagatggtggccaaatgctttccaggagatttttttcaatttcc
aaatataacttcctcaatagaattaaaagaagccccataaactgctttaa
cacagcttttgtcaaggactgggcatgctttcctgtgtacacataggtca
ataagcagagagtgagtgtgtaactccttgaaaataacaataagtaatgt
tttccctttagtaattcttttcctgtttcaggggagtcgtgagagagtgg
gg

gaattcttcagtgaaaagaaaatagacagttaagaatacaaaaattgata
acagctatcacttttgataacagacatcacaacaggtggttgagatagca
ataaatggactttaaggtttaaaagcaccattttagagaagaaaaggaac
atttcacagtgagaaaaaagattaaagttttaccaacaataaaattatcc
tgaacttgacactacccaataatatgtttacaaaactataaagcagaata
taaagccaacatggtgattcatagtgatgatttcaacactggggaggctg
agacagacagatcaaaagctcaaaattagcctgagctatagagctagacc
ctgtctcaaaaaaaaaaaaaaaaaaaaaagaaaaaaaagaaaaagaaaaa
gaaaaaagaaaagagaaaagaaatgagggcactgtgagacacaactaaaa
agaagttgaccctaaggcaacttgagcaaaacatcaacatgtattaaatg
ttaagttaataacaacagaatttatagccctttgagaaaattttgtcaga
actagacatagtgaggaataatgggattcttaacaaatgtcaaagcattg
tgatatacacaatgtgtatcctgacacaattcatttaaaaccatttctta
aagaaaagtaaatatatcatactctttttttttttttttctgtgccaagc
tttcttgaagtaccataaaattctctaggtctatgcacagtgtctcagtc
agggactgtattcctgcacaaaacatcatgaccaagaagcaagttggggg
aggaaagggtttattcggcttaagggagggtcagggactggaactcaagc
aggtcaggaagcaggagctgatgccggaggccattgaaagggatgttctt
tactggcttgcttcccctggcttgctcagcctgctttctttcagaaccta
agaagtaccagcccaggagatgacaccacccacaggggccctccccaccc
tgggatcacttatggagaaatgccttacaggctggatcctcatggaggta
tttctcaagggaagctcctttccctgtggaataactcagcttggggtcaa
ggttgacccacaatcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65937993_65939136
seq2: B6Ng01-344P08.b_49_1200 (reverse)

seq1  CCCCACTC-----CAACT-CCCTAAAACAGG-AAAGATTTACTAAAAGG-  42
      ||||||||     | ||| |||| ||||||| ||||| |||||||| || 
seq2  CCCCACTCTCTCACGACTCCCCTGAAACAGGAAAAGAATTACTAAAGGGA  50

seq1  AAACATGACTTATTGTTATTTTCCAGGAGTTAACACAACCTCACTCTGCT  92
      |||||| |||||||||||||||| ||||||| |||||  | | |||||||
seq2  AAACATTACTTATTGTTATTTTCAAGGAGTT-ACACACTCACTCTCTGCT  99

seq1  TATGGACCTATGTGTACACAGGAAAGCATGCCCCAGTCCTTGACAAGAGC  142
      ||| |||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TATTGACCTATGTGTACACAGGAAAGCATG-CCCAGTCCTTGACAAAAGC  148

seq1  TGTGTTAAAGCAGTTTATGGGGCTTCTTTTAATTCTA-TGA-GAAGTTAT  190
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TGTGTTAAAGCAGTTTATGGGGCTTCTTTTAATTCTATTGAGGAAGTTAT  198

seq1  ATTTGGAAATTGAAAAAAATCTCCTGGAAAGCATTTGGCCACCATCTGCT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAATTGAAAAAAATCTCCTGGAAAGCATTTGGCCACCATCTGCT  248

seq1  TCCTGGACCCTAACAGCTGCATCTTGCAATGCTACAGGAAGGTTAAAGAG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGACCCTAACAGCTGCATCTTGCAATGCTACAGGAAGGTTAAAGAG  298

seq1  CCAAGGTTTCTATGATATACCAGTGGCTACTATAATAGAAACATGTGGCC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGTTTCTATGATATACCAGTGGCTACTATAATAGAAACATGTGGCC  348

seq1  CAGCTATAAAGGCCATTAAAAATACGTCAAACATTTACACCCATATTAGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATAAAGGCCATTAAAAATACGTCAAACATTTACACCCATATTAGG  398

seq1  ATTAATGTTGACCCACTTCATCCACTTCCCTGGTATAGCCTGGATATAAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTGACCCACTTCATCCACTTCCCTGGTATAGCCTGGATATAAT  448

seq1  AGCCTGGGAGGCTTTGTCTGTATTTTCTGCTTTGCATCTACAGCTACATT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGAGGCTTTGTCTGTATTTTCTGCTTTGCATCTACAGCTACATT  498

seq1  GCTCCAGCATCCACATCTGCAGGAGCATCAGAAGGAGTAGCAGCAGCATT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGCATCCACATCTGCAGGAGCATCAGAAGGAGTAGCAGCAGCATT  548

seq1  CCTCATGATGCCACTGTTATTCTACAATGGCACAGTGAAGGTCAAAATAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGATGCCACTGTTATTCTACAATGGCACAGTGAAGGTCAAAATAG  598

seq1  AGTCAATTTGCAACCACTCAGTTACCTAGAGCTGGTGGGAATACTGTAGT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATTTGCAACCACTCAGTTACCTAGAGCTGGTGGGAATACTGTAGT  648

seq1  ATGAGGGTCTCTCCCAAGTCTCCAAGGGCCACAACAAAGCAGAAACTGTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGTCTCTCCCAAGTCTCCAAGGGCCACAACAAAGCAGAAACTGTC  698

seq1  CTCTGCTTATTTGGTATTTGCCCTTAACAACAAAAGAATGCTGATCTGTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTATTTGGTATTTGCCCTTAACAACAAAAGAATGCTGATCTGTG  748

seq1  GGTTGCATTAAACAACCGGCAATGCAAGAGCTAGCCTGGAACTATCTAGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCATTAAACAACCGGCAATGCAAGAGCTAGCCTGGAACTATCTAGT  798

seq1  ATCTTGTTTGTTCTTACTTTAATCCTCTTATCCACTTAGCATATGCATGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTTTGTTCTTACTTTAATCCTCTTATCCACTTAGCATATGCATGA  848

seq1  AACCTTGATTATTTCCAGCCTGCAGCTTTTAGGCAGTGGCAAGGGCAGAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGATTATTTCCAGCCTGCAGCTTTTAGGCAGTGGCAAGGGCAGAC  898

seq1  ACAGGAAACTCTGAAAAGCTATGAAGCCAATAAAAATTTAATGGGTCAAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAACTCTGAAAAGCTATGAAGCCAATAAAAATTTAATGGGTCAAC  948

seq1  ACAAAATCTTAGCACCTGTTGGTCTTTACACACTCTTAGGAAGTCACTAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTTAGCACCTGTTGGTCTTTACACACTCTTAGGAAGTCACTAC  998

seq1  CTTTCTTCCCAGGAGACCTATGGCTAGTATTCTGCGTTGTGTGGGTTTTT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCCCAGGAGACCTATGGCTAGTATTCTGCGTTGTGTGGGTTTTT  1048

seq1  CATGGTCATTTACCCATGATCAAATGAGTATAATAAAATTCCTTATACAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCATTTACCCATGATCAAATGAGTATAATAAAATTCCTTATACAT  1098

seq1  TTATTCACATACTAATAAAAAAGCACGGATCGGCGCGTCTCGAGACTTGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACATACTAATAAAAAAGCACGGATCGGCGCGTCTCGAGACTTGA  1148

seq1  ATTC  1144
      ||||
seq2  ATTC  1152


seq1: chr10_65853271_65854237
seq2: B6Ng01-344P08.g_205_1182

seq1  GAAAAGGAACATTTCACAGTGAGAAAAAAGATTAAAGTTTTACCAACAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAACATTTCACAGTGAGAAAAAAGATTAAAGTTTTACCAACAAT  50

seq1  AAAATTATCCTGAACTTGACACTACCCAATAATATGTTTACAAAACTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATCCTGAACTTGACACTACCCAATAATATGTTTACAAAACTATA  100

seq1  AAGCAGAATATAAAGCCAACATGGTGATTCATAGTGATGATTTCAACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAATATAAAGCCAACATGGTGATTCATAGTGATGATTTCAACACT  150

seq1  GGGGAGGCTGAGACAGACAGATCAAAAGCTCAAAATTAGCCTGAGCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCTGAGACAGACAGATCAAAAGCTCAAAATTAGCCTGAGCTATA  200

seq1  GAGCTAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGA  250

seq1  AAAAGAAAAAGAAAAAAGAAAAGAGAAAAGAAATGAGGGCACTGTGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAAGAAAAAAGAAAAGAGAAAAGAAATGAGGGCACTGTGAGAC  300

seq1  ACAACTAAAAAGAAGTTGACCCTAAGGCAACTTGAGCAAAACATCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAAAAGAAGTTGACCCTAAGGCAACTTGAGCAAAACATCAACAT  350

seq1  GTATTAAATGTTAAGTTAATAACAACAGAATTTATAGCCCTTTGAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAATGTTAAGTTAATAACAACAGAATTTATAGCCCTTTGAGAAAA  400

seq1  TTTTGTCAGAACTAGACATAGTGAGGAATAATGGGATTCTTAACAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAGAACTAGACATAGTGAGGAATAATGGGATTCTTAACAAATGT  450

seq1  CAAAGCATTGTGATATACACAATGTGTATCCTGACACAATTCATTTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTGTGATATACACAATGTGTATCCTGACACAATTCATTTAAAA  500

seq1  CCATTTCTTAAAGAAAAGTAAATATATCATACTCTTTTTTTTTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTAAAGAAAAGTAAATATATCATACTCTTTTTTTTTTTTTTTC  550

seq1  TGTGCCAAGCTTTCTTGAAGTACCATAAAATTCTCTAGGTCTATGCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAAGCTTTCTTGAAGTACCATAAAATTCTCTAGGTCTATGCACAG  600

seq1  TGTCTCAGTCAGGGACTGTATTCCTGCACAAAACATCATGACCAAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGTCAGGGACTGTATTCCTGCACAAAACATCATGACCAAGAAGC  650

seq1  AAGTT-GGGGAGGAAAGGGTTTATTCGGCTTAAGG--AGGTCA-GGACTG  696
      ||||| |||||||||||||||||||||||||||||   ||||| ||||||
seq2  AAGTTGGGGGAGGAAAGGGTTTATTCGGCTTAAGGGAGGGTCAGGGACTG  700

seq1  GAACTCAAGCAGGTCAGGAAGCAGGAGCTGATG-CGGAGGCCAT--GAAG  743
      ||||||||||||||||||||||||||||||||| ||||||||||   |||
seq2  GAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCCGGAGGCCATTGAAAG  750

seq1  GGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTTTCTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTTTCTT  800

seq1  TCAGAACCTAAG-AGTACCAGCCCA-GAGATGACACCACCCACAAGGGGC  841
      |||||||||||| |||||||||||| ||||||||||||||||| ||||||
seq2  TCAGAACCTAAGAAGTACCAGCCCAGGAGATGACACCACCCAC-AGGGGC  849

seq1  CCT-CCCACCCT-GGATCACTAATTGAGAAAATGCCTTACA-GCTGGAT-  887
      ||| |||||||| |||||||| || ||| |||||||||||| ||||||| 
seq2  CCTCCCCACCCTGGGATCACTTATGGAG-AAATGCCTTACAGGCTGGATC  898

seq1  CTCATGGAGGTATTTCTTCAAGGGAAGCTCCTTTCTCTGTG--ATAACTC  935
      |||||||||||||||| |||||||||||||||||| |||||  |||||| 
seq2  CTCATGGAGGTATTTC-TCAAGGGAAGCTCCTTTCCCTGTGGAATAACT-  946

seq1  CAGCTT-GTGTCAA-GTTGACACACAAAATCAGC  967
      |||||| | ||||| |||||| |||  |||||||
seq2  CAGCTTGGGGTCAAGGTTGACCCAC--AATCAGC  978


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