BAC Information

Click to search

BAC

Clone NameB6Ng01-346J02
Chromosome10 (Build37)
Map Location 62,958,514 - 62,959,087
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneSrgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346J02.g
ACCGA128430
length569
definitionB6Ng01-346J02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgagactattagatagatagaaatgatatcctttaagggtgttttgttt
tgtttttattttttgtctggagcaactggaaagagagttgtcattaacta
gggtgagggtagacacaacgatagcagagtctgagaacacggagctgcac
actgaagcacctgtgttcaaagctggatacataagagcagagtttggaaa
ctcggtctgggatgaaaatataaatgctaggactaggaacaagtatacac
aaatctttcatcccagcacacagaaggcagaggcaggtggatctctgtga
gttcaaggccagcttggtctacatagcaaattctaggtcagtcaggacta
caaagtgggactttgtctcaaaaggagagaggaaatagagagacagacag
agagacagagaatataaatgtcagaattgccaacagatcgggctagtgag
atggttcagtctaagaatccacataatagggatggagagatggctcatca
gttaagagcacttgactgctcttccagcggtcctgggtttaattcccatc
aaccacatgatggctcaca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_62958514_62959087
seq2: B6Ng01-346J02.g_69_643 (reverse)

seq1  TGTGAGCCATCATGTGGTTGATGGGAATTAAACCCAGGACCGCTGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCATCATGTGGTTGATGGGAATTAAACCCAGGACCGCTGGAAGA  50

seq1  GCAGTC-AGTGCTCTTAACTGATGAGCCATCTCTCCATCCCTATTATGTG  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCAAGTGCTCTTAACTGATGAGCCATCTCTCCATCCCTATTATGTG  100

seq1  GATTCTTAGACTGAACCATCTCACTAGCCCGATCTGTTGGCAATTCTGAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTAGACTGAACCATCTCACTAGCCCGATCTGTTGGCAATTCTGAC  150

seq1  ATTTATATTCTCTGTCTCTCTGTCTGTCTCTCTCTTTCCTCTCTCCTTTT  199
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTTATATTCTCTGTCTCTCTGTCTGTCTCTCTATTTCCTCTCTCCTTTT  200

seq1  GAGACAAAGTCCCACTTTGTAGTCCTGACTGACCTAGAATTTGCTATGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAGTCCCACTTTGTAGTCCTGACTGACCTAGAATTTGCTATGTA  250

seq1  GACCAAGCTGGCCTTGAACTCACAGAGATCCACCTGCCTCTGCCTTCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGCTGGCCTTGAACTCACAGAGATCCACCTGCCTCTGCCTTCTGT  300

seq1  GTGCTGGGATGAAAGATTTGTGTATACTTGTTCCTAGTCCTAGCATTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATGAAAGATTTGTGTATACTTGTTCCTAGTCCTAGCATTTAT  350

seq1  ATTTTCATCCCAGACCGAGTTTCCAAACTCTGCTCTTATGTATCCAGCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATCCCAGACCGAGTTTCCAAACTCTGCTCTTATGTATCCAGCTT  400

seq1  TGAACACAGGTGCTTCAGTGTGCAGCTCCGTGTTCTCAGACTCTGCTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACAGGTGCTTCAGTGTGCAGCTCCGTGTTCTCAGACTCTGCTATC  450

seq1  GTTGTGTCTACCCTCACCCTAGTTAATGACAACTCTCTTTCCAGTTGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCTACCCTCACCCTAGTTAATGACAACTCTCTTTCCAGTTGCTC  500

seq1  CAGACAAAAAATAAAAACAAAACAAAACACCCTTAAAGGATATCATTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAAAATAAAAACAAAACAAAACACCCTTAAAGGATATCATTTCT  550

seq1  ATCTATCTTATAGTCTCAGGAATTC  574
      |||||||| ||||||||||||||||
seq2  ATCTATCTAATAGTCTCAGGAATTC  575