BAC Information

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BAC

Clone NameB6Ng01-346L20
Chromosome10 (Build37)
Map Location 72,335,632 - 72,483,746
singlet/doubletdoublet
Overlap genenone
Upstream gene1700049L16Rik, LOC100040505, Zwint
Downstream geneLOC432471, LOC544705, LOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346L20.bB6Ng01-346L20.g
ACCGA128554GA128555
length1,1271,131
definitionB6Ng01-346L20.b B6Ng01-346L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,335,632 - 72,336,768)(72,482,610 - 72,483,746)
sequence
gaattccaattgtacccaacaagatttaatacagagattgtcctgtgtct
gtttgtccatctgtctgtctctttgtctgtctctctgtctcactgtctct
ctccatctctctctttctatctgtctctgtccatttcatctgtctgtctg
tctatctgtctgtctcttttttctgtgtgctctttgtctcatgtactttt
ttagtacctctctagacactccttgaataataatgaggctttgtggttct
tcagtttgtcacttctcttattacaaaggtctgtgtgtagcatcactgtt
agtgcttgtgggaggagtgatccacagctctgttcagatgtccatcatgc
agggagcctggctcataaagctgtcagatcacatgtgtccatccaccttt
ccttcatccttgctaatggttaaagatcagctagccattgcccataactg
ggttggaatgagacattctcatattttactttacatattttataacatcc
acgttaaagttttattatgtgatatttgaatgtgcattcccatctctgtc
tcatattaatttatccatttaaacatatttacatgccctccacttcttta
aataagttgatattaccatgttttaaatagattccattttggtgcaacaa
ataaaatatctgaaaaaatggatatccaacaaactgacatcaactctagc
catgggttgctgtaaattcaggctttttattcaccaagtacatttttatt
tataaaagggcttcaataacatcatcatcgaggtatatgagggattctaa
cgtggctcttccaacactttctaaagtgtatctgtggtactcacctgcag
ctccaagtcaggtcaagtatggagacctttatttagattggagacctctg
tgccatgtctctgtccatgttcagctgttagataccctccagtatctctt
ataagcaatctgggtaagaaagagtgaagtttgactccaagctgattgca
atgggggcaaggagagatgttcatgtattgctggtagttagctgtttctg
gacttctgtctttgtttgagaaggctttatgtaaacaacacattcatgtg
agatggccccttttgtgcacggtaaac
gaattcaagcatggttggaatatagaggagacagtgcaatatgcatagtt
attaaactttaaagacacaaatgttaattgtaagtgctgagtactggttt
ctttcctgtatttttgtcgtttttttttttttttttttttaatatttcct
ttagactttgtaattcaatgttgcatttcttctctacttctggaacaaag
gagaaatggtgaccacaggagactgtaactgtaacaataactcttttcct
taagtatttgttactggacacagcaagtattaactattttcaccagggtg
aattaggagatctctcttcaaatattaaacactgggaatgcttaatatta
tttaatattattaaattatttacttttgaacattatgtttaacatattca
tttgtcaagtaagaataagcagacagtatcaaaaatatcagaatgttttt
gtatatactttaaaaactctctgaactgtagggtaacaacaactatgtat
tctgaacaaacattactatttcacactcccccaccccctccccacccacc
aaacaccttagatgctagtttagggatcatgtatcatttgtctcgaaatt
ccttttccccagtacatctgtgtcaagtgtaaaacagggagattgtcact
agaggtgagaaaaaaaatgatggaaatgtcagctccagctccacatcgca
acagacagtgaatcagaccactaagccaactggagattctgatctccact
gactcttggaacatgactcagctgagaagcatgggggcattgcagccagg
acagtgggaagagactttgtgagacagaccttgtagtggctcactgtata
ctgagcgcttctggagtctgaggaaaaagcatcccaaattcaagactagc
aagtctgaaaatagggagaaaatagtgccagagtgtgaccattgcattgc
tgtgtgccttgagtacacagccatagaggacgtatgaacacactccacct
ttctcatagtgacgtcaaactgacttcatgtttgcccgttattccccacc
tcgcagctctatgggtaggaaacaatcaggctacattaattttattattt
gcctgtagtaccttagtactgcataggtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72335632_72336768
seq2: B6Ng01-346L20.b_44_1170

seq1  GAATTCCAATTGTACCCAACAAGATTTAATACAGAGATTGTCCTGTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTGTACCCAACAAGATTTAATACAGAGATTGTCCTGTGTCT  50

seq1  GTTTGTCCATCTGTCTGTCTCTTTGTCTGTCTCTCTGTCTCACTGTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCCATCTGTCTGTCTCTTTGTCTGTCTCTCTGTCTCACTGTCTCT  100

seq1  CTCCATCTCTCTCTTTCTATCTGTCTCTGTCCATTTCATCTGTCTGTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCTCTCTTTCTATCTGTCTCTGTCCATTTCATCTGTCTGTCTG  150

seq1  TCTATCTGTCTGTCTCTTTTTTCTGTGTGCTCTTTGTCTCATGTACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTGTCTGTCTCTTTTTTCTGTGTGCTCTTTGTCTCATGTACTTTT  200

seq1  TTAGTACCTCTCTAGACACTCCTTGAATAATAATGAGGCTTTGTGGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACCTCTCTAGACACTCCTTGAATAATAATGAGGCTTTGTGGTTCT  250

seq1  TCAGTTTGTCACTTCTCTTATTACAAAGGTCTGTGTGTAGCATCACTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGTCACTTCTCTTATTACAAAGGTCTGTGTGTAGCATCACTGTT  300

seq1  AGTGCTTGTGGGAGGAGTGATCCACAGCTCTGTTCAGATGTCCATCATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGTGGGAGGAGTGATCCACAGCTCTGTTCAGATGTCCATCATGC  350

seq1  AGGGAGCCTGGCTCATAAAGCTGTCAGATCACATGTGTCCATCCACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCCTGGCTCATAAAGCTGTCAGATCACATGTGTCCATCCACCTTT  400

seq1  CCTTCATCCTTGCTAATGGTTAAAGATCAGCTAGCCATTGCCCATAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATCCTTGCTAATGGTTAAAGATCAGCTAGCCATTGCCCATAACTG  450

seq1  GGTTGGAATGAGACATTCTCATATTTTACTTTACATATTTTATAACATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGAATGAGACATTCTCATATTTTACTTTACATATTTTATAACATCC  500

seq1  ACGTTAAAGTTTTATTATGTGATATTTGAATGTGCATTCCCATCTCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAAAGTTTTATTATGTGATATTTGAATGTGCATTCCCATCTCTGTC  550

seq1  TCATATTAATTTATCCATTTAAACATATTTACATGCCCTCCACTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTAATTTATCCATTTAAACATATTTACATGCCCTCCACTTCTTTA  600

seq1  AATAAGTTGATATTACCATGTTTTAAATAGATTCCATTTTGGTGCAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTTGATATTACCATGTTTTAAATAGATTCCATTTTGGTGCAACAA  650

seq1  ATAAAATATCTGAAAAAATGGATATCCAACAAACTGACATCAACTCTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATCTGAAAAAATGGATATCCAACAAACTGACATCAACTCTAGC  700

seq1  CATGGGTTGCTGTAAATTCAGGCTTTTTATTCACCAAGTACATTTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTGCTGTAAATTCAGGCTTTTTATTCACCAAGTACATTTTTATT  750

seq1  TATAAAAGGGCTTCAATAACATCATCATCGAGGTATATGAGGGATTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGGGCTTCAATAACATCATCATCGAGGTATATGAGGGATTCTAA  800

seq1  CGTGGCTCTTCCAACACTTTCTAAAGTGTATCTGTGGTACTCACCTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGCTCTTCCAACACTTTCTAAAGTGTATCTGTGGTACTCACCTGCAG  850

seq1  CTCCAAGTCAGGTCAAGTATGGAGACCTTTATTTAGATTGGAGACCTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTCAGGTCAAGTATGGAGACCTTTATTTAGATTGGAGACCTCTG  900

seq1  TGCCATGTCTCTGTCCATGTTCAGCTGTTAGATACCCTCCAGTATCTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGTCTCTGTCCATGTTCAGCTGTTAGATACCCTCCAGTATCTCTT  950

seq1  ATAAGCAATCTGGGTAAGAAAGAAGTGAAGTTTGGACTCCAAGCTGATTG  1000
      |||||||||||||||||||||| |||||||||| ||||||||||||||| 
seq2  ATAAGCAATCTGGGTAAGAAAG-AGTGAAGTTT-GACTCCAAGCTGATT-  997

seq1  GCAATGGGGGCAAGGAGAGATGTTCCATGTATTGCTGGGAAGTTAGCTGT  1050
      |||||||||||||||||||||||| ||||||||||| || ||||||||||
seq2  GCAATGGGGGCAAGGAGAGATGTT-CATGTATTGCT-GGTAGTTAGCTGT  1045

seq1  TTCTGGAACTTTCTGTTCTTTGGTTTGAGAAGGCTTTATGTAAACAACAC  1100
      |||||||   ||||| ||||| ||||||||||||||||||||||||||||
seq2  TTCTGGA--CTTCTG-TCTTT-GTTTGAGAAGGCTTTATGTAAACAACAC  1091

seq1  ATTTCAATGTGAAGATG--CCCCTTTGTGCACCGTAAAC  1137
      |||   ||||| |||||  ||| ||||||||| ||||||
seq2  ATT--CATGTG-AGATGGCCCCTTTTGTGCACGGTAAAC  1127

seq1: chr10_72482610_72483746
seq2: B6Ng01-346L20.g_68_1198 (reverse)

seq1  AAAACCTATGCAAGTATTTAGGGTACTACAGCAAAATAATAAAAATAATG  50
      ||||||||||| ||||  || ||||||||||  ||||||||||| |||||
seq2  AAAACCTATGC-AGTA-CTAAGGTACTACAGGCAAATAATAAAATTAATG  48

seq1  TAAGCTCGAATTGTTTCCTA-CCATAGAGCTTGCCGAGTGGTGAATAAC-  98
      ||  ||   ||||||||||| ||||||||| |||   |||| ||||||| 
seq2  TAGCCT--GATTGTTTCCTACCCATAGAGC-TGCGAGGTGGGGAATAACG  95

seq1  GGCAAACATGAAGTCAAGTTTGACCGTCACTATGAG-AAGGT-GAGTGTG  146
      ||||||||||||||| ||||||| |||||||||||| ||||| |||||||
seq2  GGCAAACATGAAGTC-AGTTTGA-CGTCACTATGAGAAAGGTGGAGTGTG  143

seq1  TTCATACCGTTCTCTTATGGCTGTGTACTCAAGGCACACAGCAATGCAAT  196
      |||||| ||| ||| |||||||||||||||||||||||||||||||||||
seq2  TTCATA-CGTCCTC-TATGGCTGTGTACTCAAGGCACACAGCAATGCAAT  191

seq1  GGTCACACCTCTGGCACTATTTTCTCCCTATTTTCAGACTTGCTAGTCTT  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACA-CTCTGGCACTATTTTCTCCCTATTTTCAGACTTGCTAGTCTT  240

seq1  GAATTTGGGATGCTTTTTTCCTCAGACTCCAGAAGCGCTCAGTATACAGT  296
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATTTGGGATGC-TTTTTCCTCAGACTCCAGAAGCGCTCAGTATACAGT  289

seq1  GAGCCACTACAAGGTCTGTCTCACAAAGTCTCTT-CCACTGTCCTGGCTG  345
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGCCACTACAAGGTCTGTCTCACAAAGTCTCTTCCCACTGTCCTGGCTG  339

seq1  CAATGCCCCCATGCTTCTCAGCTGAGTCATGTTCCAAGAGTCAGTGGAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCCCATGCTTCTCAGCTGAGTCATGTTCCAAGAGTCAGTGGAGA  389

seq1  TCAGAATCTCCAGTTGGCTTAGTGGTCTGATTCACTGTCTGTTGCGATGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCTCCAGTTGGCTTAGTGGTCTGATTCACTGTCTGTTGCGATGT  439

seq1  GGAGCTGGAGCTGACATTTCCATCATTTTTTTTCTCACCTCTAGTGACAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGCTGACATTTCCATCATTTTTTTTCTCACCTCTAGTGACAA  489

seq1  TCTCCCTGTTTTACACTTGACACAGATGTACTGGGGAAAAGGAATTTCGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGTTTTACACTTGACACAGATGTACTGGGGAAAAGGAATTTCGA  539

seq1  GACAAATGATACATGATCCCTAAACTAGCATCTAAGGTGTTTGGTGGGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGATACATGATCCCTAAACTAGCATCTAAGGTGTTTGGTGGGTG  589

seq1  GGGAGGGGGTGGGGGAGTGTGAAATAGTAATGTTTGTTCAGAATACATAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGTGGGGGAGTGTGAAATAGTAATGTTTGTTCAGAATACATAG  639

seq1  TTGTTGTTACCCTACAGTTCAGAGAGTTTTTAAAGTATATACAAAAACAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTACCCTACAGTTCAGAGAGTTTTTAAAGTATATACAAAAACAT  689

seq1  TCTGATATTTTTGATACTGTCTGCTTATTCTTACTTGACAAATGAATATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATATTTTTGATACTGTCTGCTTATTCTTACTTGACAAATGAATATG  739

seq1  TTAAACATAATGTTCAAAAGTAAATAATTTAATAATATTAAATAATATTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATAATGTTCAAAAGTAAATAATTTAATAATATTAAATAATATTA  789

seq1  AGCATTCCCAGTGTTTAATATTTGAAGAGAGATCTCCTAATTCACCCTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCCAGTGTTTAATATTTGAAGAGAGATCTCCTAATTCACCCTGG  839

seq1  TGAAAATAGTTAATACTTGCTGTGTCCAGTAACAAATACTTAAGGAAAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAGTTAATACTTGCTGTGTCCAGTAACAAATACTTAAGGAAAAG  889

seq1  AGTTATTGTTACAGTTACAGTCTCCTGTGGTCACCATTTCTCCTTTGTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGTTACAGTTACAGTCTCCTGTGGTCACCATTTCTCCTTTGTTC  939

seq1  CAGAAGTAGAGAAGAAATGCAACATTGAATTACAAAGTCTAAAGGAAATA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTAGAGAAGAAATGCAACATTGAATTACAAAGTCTAAAGGAAATA  989

seq1  TTAAAAAAAAAAAAAAAAAAAAACGACAAAAATACAGGAAAGAAACCAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAAAAAAAAACGACAAAAATACAGGAAAGAAACCAGT  1039

seq1  ACTCAGCACTTACAATTAACATTTGTGTCTTTAAAGTTTAATAACTATGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCACTTACAATTAACATTTGTGTCTTTAAAGTTTAATAACTATGC  1089

seq1  ATATTGCACTGTCTCCTCTATATTCCAACCATGCTTGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCACTGTCTCCTCTATATTCCAACCATGCTTGAATTC  1131