BAC Information

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BAC

Clone NameB6Ng01-347H22
Chromosome10 (Build37)
Map Location 125,460,693 - 125,461,892
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994, Lrig3
Downstream geneLOC100043547, LOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347H22.bB6Ng01-347H22.g
ACCGA129081GA129082
length1,2061,180
definitionB6Ng01-347H22.b B6Ng01-347H22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgagttgggtccaaaactgagctgacattctttataataaacc
ttggtgttctacattgtccccctcctggaattagacaactttccatcttt
ataggcaaccggcttactttcaacgccgttcactttagtctcttatcaag
acagccatagagttaatatggctaaatacaaacttaataagcacatggcc
tggcttattccccggtattaagcaagtggctattaatatatgtctttctt
ttgatcaaaacccttcatatacataaatgttccacaaaggaaagactaga
taactgtcttagagtttcatagctgtgaagagacaccatgaccaaagaaa
ctcatataaaagtaaacgtttgattggggctggcttacagtttcagacgt
tctgtccattatcatcacagtgggaagcatggcagcgtgcaggcagacat
ggtgctggaggagccaacagtcctacaacttgttccaagggcaaacgggg
aagggtcttggctgcactgagcagagcttcagctctaggagctctcacct
acacagagacacacttccttccacgcggccacaccgcccagtggtgccat
ttctcatgggccaagcacattcaaaccaccaccactacctctctttagtg
ccctgtcatagattcctgtgcttctaccactccgtcctgccttgcacacc
atagaccagcttgcttgttcctataacaccagtgtatttgcagtttgtct
taagcattgagtgctgtcccctgacatgaacacctttcttaggacataga
taaaatgagtgaattcttgcagtcatctaatgtaacattttattccctac
cactgatattgcaacatttgttactttgtagcatgccacacaccagtcat
ttggcttagtttacttcacaataccctgaatgatagaggtaagttttatt
ttattttggtcattacatttctgcagtgtacagtacgcattaaaaagtac
tcagcatactttaaatgaagattaggcaacttcatacattttagatcata
agtttctttttttatcacctgatgaggtgttttccagaacatttccacct
cttgtgtggtccccttccctgggttctcttacttgcaatccttgtaatat
acagctctacacacaggaacccgatttcatctaagtggcaagggacctct
caaccc
gaattcagaacgttgggttagaaaagccactgagttttgagagttcagtg
agctgttctgtaggagatcagagtataagaatgttgagagcagtatagag
gattcaggcccggattgtgatgtttcagaggaaagcaaagactccattag
acctttggtgtaatgagtctgtggttatggtcagctggggctggagaatc
agctgtgattaacaaaagtccagacccactgaaataaaaccttagtttgt
tcagacaattcatgctgatagctagagctaagaaattggtggtgattaag
ggaagaccagcatcattgaggtgacatcttgtagggagtatttttgtcag
agctagcactatattccagagttagtcaaggttgtacctcatgctggcat
ctgaacttggtagtgtaagagtcacctaggaagtactaggtttgaagacg
tgaaggggtcatgaaacgcagctgaggcttggcactgcgagaggcgacga
caggctactgcagatggtagaccctcaacagaagttgaaactccagggct
aaaggggtatggagaaagacagagacctagagaggctactagcgatggtg
caacccagttgcagcagaaaccctagcattttggagatgtcagtaacagg
ggataaccaccaagaacagcagcagaggggagcctgtctgagcttagaag
aaaaattgtgtgttgcaaaaggacaatcagagaagaggtctcttcaagcc
tccttggagaagatcagaagactgtgagtgcactccagacactcgatgtt
gagttatttactgttggagtttggttttgctttgctcacattgtgaccat
gcccaggttcttccctcttgaagaaggtgtttaaattaattgtgcttttt
acagtagctcactgctgggaggctttgggcttttagagggattttggatt
ttgaaaagaaatgatattttaaagagactgattttgatgctttatatgta
agactgtggggtttttttagtagttgtttcatgtgagatctggggatgac
taaaaggaccagtgtgcttaccctggcaatgtgctggtgtcaagtgaagg
ggtccagtatgcctggatagctaggtcactgatcagctaatgcatctgga
agaggactctgcataggaactgccgtctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_125460693_125461892
seq2: B6Ng01-347H22.b_49_1254 (reverse)

seq1  GGGTTGAGA--ACCACTG-CAC-TAGATGAAAATTGGGT--CTGTGTGTA  44
      |||||||||   ||  || ||| |||||| |||| ||||  |||||||||
seq2  GGGTTGAGAGGTCCCTTGCCACTTAGATG-AAATCGGGTTCCTGTGTGTA  49

seq1  GAGGTTGTATATTTACAGAGA-TGCAGGTAAGAGAAACCAGGGGAAGGGG  93
      || | |||||| |||||  || |||| ||||||||| ||| |||||||||
seq2  GA-GCTGTATA-TTACAAGGATTGCAAGTAAGAGAACCCA-GGGAAGGGG  96

seq1  A-CACAC-AGA-GTGG-AATGTTCTGGAAAACACCTCATCAGGGTGAT-A  138
      | ||||| ||| |||| |||||||||||||||||||||||| |||||| |
seq2  ACCACACAAGAGGTGGAAATGTTCTGGAAAACACCTCATCA-GGTGATAA  145

seq1  AAAAAGAAACTTTATGATCTAAAATGTATGAAGTTGCCTAATCTTCATTT  188
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAC-TTATGATCTAAAATGTATGAAGTTGCCTAATCTTCATTT  194

seq1  AAAGTATGCTGAGTACTTTTTAATGCGTACTGTACCACCTGCAGAAATGT  238
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  AAAGTATGCTGAGTACTTTTTAATGCGTACTGTAC--ACTGCAGAAATGT  242

seq1  AATGACCAAA--TAAATAAAACTTACCTCTATCATTCAGGGTATTGTGAA  286
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  AATGACCAAAATAAAATAAAACTTACCTCTATCATTCAGGGTATTGTGAA  292

seq1  GTAAACTAAGCCAAATGACTGGTGTGTGGCATGCTACAAAGTAACAAATG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTAAGCCAAATGACTGGTGTGTGGCATGCTACAAAGTAACAAATG  342

seq1  TTGCAATATCAGTGGTAGGGAATAAAATGTTACATTAGATGACTGCAAGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATATCAGTGGTAGGGAATAAAATGTTACATTAGATGACTGCAAGA  392

seq1  ATTCACTCATTTTATCTATGTCCTAAGAAAGGTGTTCATGTCAGGGGACA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCATTTTATCTATGTCCTAAGAAAGGTGTTCATGTCAGGGGACA  442

seq1  GCACTCAATGCTTAAGACAAACTGCAAATACACTGGTGTTATAGGAACAA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAATGCTTAAGACAAACTGCAAATACACTGGTGTTATAGGAACAA  492

seq1  GCAAGCTGGTCTATGGTGTGCAAGGCAGGACGGAGTGGTAGAAGCACAGG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTGGTCTATGGTGTGCAAGGCAGGACGGAGTGGTAGAAGCACAGG  542

seq1  AATCTATGACAGGGCACTAAAGAGAGGTAGTGGTGGTGGTTTGAATGTGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGACAGGGCACTAAAGAGAGGTAGTGGTGGTGGTTTGAATGTGC  592

seq1  TTGGCCCATGAGAAATGGCACCACTGGGCGGTGTGGCCGCGTGGAAGGAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCCATGAGAAATGGCACCACTGGGCGGTGTGGCCGCGTGGAAGGAA  642

seq1  GTGTGTCTCTGTGTAGGTGAGAGCTCCTAGAGCTGAAGCTCTGCTCAGTG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTCTGTGTAGGTGAGAGCTCCTAGAGCTGAAGCTCTGCTCAGTG  692

seq1  CAGCCAAGACCCTTCCCCGTTTGCCCTTGGAACAAGTTGTAGGACTGTTG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGACCCTTCCCCGTTTGCCCTTGGAACAAGTTGTAGGACTGTTG  742

seq1  GCTCCTCCAGCACCATGTCTGCCTGCACGCTGCCATGCTTCCCACTGTGA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCCAGCACCATGTCTGCCTGCACGCTGCCATGCTTCCCACTGTGA  792

seq1  TGATAATGGACAGAACGTCTGAAACTGTAAGCCAGCCCCAATCAAACGTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGGACAGAACGTCTGAAACTGTAAGCCAGCCCCAATCAAACGTT  842

seq1  TACTTTTATATGAGTTTCTTTGGTCATGGTGTCTCTTCACAGCTATGAAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTATATGAGTTTCTTTGGTCATGGTGTCTCTTCACAGCTATGAAA  892

seq1  CTCTAAGACAGTTATCTAGTCTTTCCTTTGTGGAACATTTATGTATATGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGACAGTTATCTAGTCTTTCCTTTGTGGAACATTTATGTATATGA  942

seq1  AGGGTTTTGATCAAAAGAAAGACATATATTAATAGCCACTTGCTTAATAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTGATCAAAAGAAAGACATATATTAATAGCCACTTGCTTAATAC  992

seq1  CGGGGAATAAGCCAGGCCATGTGCTTATTAAGTTTGTATTTAGCCATATT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAATAAGCCAGGCCATGTGCTTATTAAGTTTGTATTTAGCCATATT  1042

seq1  AACTCTATGGCTGTCTTGATAAGAGACTAAAGTGAACGGCGTTGAAAGTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTATGGCTGTCTTGATAAGAGACTAAAGTGAACGGCGTTGAAAGTA  1092

seq1  AGCCGGTTGCCTATAAAGATGGAAAGTTGTCTAATTCCAGGAGGGGGACA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGTTGCCTATAAAGATGGAAAGTTGTCTAATTCCAGGAGGGGGACA  1142

seq1  ATGTAGAACACCAAGGTTTATTATAAAGAATGTCAGCTCAGTTTTGGACC  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAACACCAAGGTTTATTATAAAGAATGTCAGCTCAGTTTTGGACC  1192

seq1  CAACTCAGGAATTC  1200
      ||||||||||||||
seq2  CAACTCAGGAATTC  1206