BAC Information

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BAC

Clone NameB6Ng01-347L04
Chromosome10 (Build37)
Map Location 100,314,812 - 100,431,678
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347L04.bB6Ng01-347L04.g
ACCGA129227GA129228
length1,1851,193
definitionB6Ng01-347L04.b B6Ng01-347L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,314,812 - 100,316,009)(100,430,465 - 100,431,678)
sequence
gaattctcaactgaggaataccgaatggctcagaagcacctaaaaaaaaa
tgttcaacatccttaaacatcaggaaaatgcaaatcaaaacagtcctgag
attccacctcacaccagtcagaatagctaagatcacaaattcagttgaca
gcagatgctggcgaggatgtagagaaatcggaacactccttcattgctga
tgggactgcaagcatgtacaaccacgctggaaatcagtttggcggttcct
cagaaaattggacatagttctactggaagatccagcaatacctttcctgg
gcatatacccagaagatgctccaacttttaattaggatccatcctccact
gtgttcatagcagccttatttatgatagccagaagctggaaagaacccaa
atgtctctcaacagaggaatggatacagaaaatgtggtacatttacacaa
tggagtactacacaactattagaaacaatgaatttatgaaattcttagag
tcttgtgattgtatctctcaaattctgagattggaggcatgtgccatgag
atccatttttttttaatggtaaaattgttctcgacattacatatactaga
aatgcattaaatagtattcaaatatacaaaagtagcacaggatagttact
gtttttgtatattctttctagttgatgtgcctgcgcaaaaaagcatatgt
aataaatgtcagtttctatttctatataatgaaatggccacagtcaaggg
taacttgtagaatagtgaacttttctaaaattatatccacaattataatg
ttaattgttggtaattattaacttctggaaagattgtttctagaattgtc
tgccctagtattgttatctagttcctaatagtagcaatcatttaaaggaa
cttaaaaaaaacattttcttgcaaatacttatatactgctactggtattg
aataatttgtcttttgctcagtggaagttcttatgcatttaaaaaaggca
ggatatataataatttgcacactgtaactgggaattttcagaggaaataa
gacatttcatgcttttcaaatcatagtattcaatgatgtacatcatcact
tcaataaatcttgctgggctctgcttctatggcagaatactatgctgaac
ctgaatgagctagtaggctgtgctttagtcctatt
gaattctacatctaccaaaaagccagatattcacactgaagctaaaatta
tctttagtaaacatgtctcctaaaatcagaaactactattgaaactgaaa
ggtgttagattttagatcagtaaaagtgttggtctcctggtattcaggta
aattgatggttatcattcatatataggaaatgttttaaaatattaacatt
atgtgaaattaagtaataatttatgaatgccagtggccaaaattgccatt
ccatatctgtatttgttaaatttttggcttctaacaacagattacatgtc
tgctgcactgtcataggaagataaattcaagtgaggattgtgatacagtc
aagaattctcagcaaacaaagctttgttgaaattttaaagtaatattctg
agattgctgaaaggaacccataatagtcaggattataacagatgcaacaa
ttgcaacggtgatgaatatgataaatacattatcattcaacaaggtaaag
ttcgatctgaagaaaaatttatagcaaaatggcaagggaatgtatatata
ctatacttatatgtatatataagagaactcagatctcgtggagacagtat
agtccacctatcagacaacaaaactgttgctggctttaaagataacactg
ctctgggctagctagtgagctgcctgttgtatggactgcacagaaccagc
aacaatcaaacacccctattttgctcagggtgttgtgcgggctacgtgga
gtcttacagaagaagaaaaatgtagctgtgtgactctctgaagaaatggt
gttgtgtcttctgagcttgtatctgcttgagaaggaaaatttcagacatc
ttgaaaagtattatatacaaatcctgtttctgggagacggcaagaaggtt
atgatctctatgctaatgtcacaaggtccatagggataacactctgagct
tgtgggtggtacagtgctccaatagaggtactgtctgctatgtctcactt
cctgtcagtcaatctgatacagatattgctttctgtcctatacaaatatg
aaatgtactgcaaatcatataaataaaaatattttctatacatttagatc
aatcattatggtaatattctaagcaacaggctaaaacattcaggaagcta
gcggattcagttgcattccatataattgatccacatttgggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100314812_100316009
seq2: B6Ng01-347L04.b_47_1231

seq1  GAATTCTCAACTGAGGAATACCGAATGGCTCAGAAGCACCTAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAATACCGAATGGCTCAGAAGCACCTAAAAAAAAA  50

seq1  TGTTCAACATCCTTAAACATCAGGAAAATGCAAATCAAAACAGTCCTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACATCCTTAAACATCAGGAAAATGCAAATCAAAACAGTCCTGAG  100

seq1  ATTCCACCTCACACCAGTCAGAATAGCTAAGATCACAAATTCAGTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACCTCACACCAGTCAGAATAGCTAAGATCACAAATTCAGTTGACA  150

seq1  GCAGATGCTGGCGAGGATGTAGAGAAATCGGAACACTCCTTCATTGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTGGCGAGGATGTAGAGAAATCGGAACACTCCTTCATTGCTGA  200

seq1  TGGGACTGCAAGCATGTACAACCACGCTGGAAATCAGTTTGGCGGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGCAAGCATGTACAACCACGCTGGAAATCAGTTTGGCGGTTCCT  250

seq1  CAGAAAATTGGACATAGTTCTACTGGAAGATCCAGCAATACCTTTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTGGACATAGTTCTACTGGAAGATCCAGCAATACCTTTCCTGG  300

seq1  GCATATACCCAGAAGATGCTCCAACTTTTAATTAGGATCCATCCTCCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACCCAGAAGATGCTCCAACTTTTAATTAGGATCCATCCTCCACT  350

seq1  GTGTTCATAGCAGCCTTATTTATGATAGCCAGAAGCTGGAAAGAACCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATAGCAGCCTTATTTATGATAGCCAGAAGCTGGAAAGAACCCAA  400

seq1  ATGTCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAA  450

seq1  TGGAGTACTACACAACTATTAGAAACAATGAATTTATGAAATTCTTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACTACACAACTATTAGAAACAATGAATTTATGAAATTCTTAGAG  500

seq1  TCTTGTGATTGTATCTCTCAAATTCTGAGATTGGAGGCATGTGCCATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGATTGTATCTCTCAAATTCTGAGATTGGAGGCATGTGCCATGAG  550

seq1  ATCCATTTTTTTTTAATGGTAAAATTGTTCTCGACATTACATATACTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTTTTTTTAATGGTAAAATTGTTCTCGACATTACATATACTAGA  600

seq1  AATGCATTAAATAGTATTCAAATATACAAAAGTAGCACAGGATAGTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATTAAATAGTATTCAAATATACAAAAGTAGCACAGGATAGTTACT  650

seq1  GTTTTTGTATATTCTTTCTAGTTGATGTGCCTGCGCAAAAAAGCATATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTATATTCTTTCTAGTTGATGTGCCTGCGCAAAAAAGCATATGT  700

seq1  AATAAATGTCAGTTTCTATTTCTATATAATGAAATGGCCACAGTCAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTCAGTTTCTATTTCTATATAATGAAATGGCCACAGTCAAGGG  750

seq1  TAACTTGTAGAATAGTGAACTTTTCTAAAATTATATCCACAATTATAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTAGAATAGTGAACTTTTCTAAAATTATATCCACAATTATAATG  800

seq1  TTAATTGTTGGTAATTATTAACTTCTGGAAAGATTGTTTCTAGAATTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTTGGTAATTATTAACTTCTGGAAAGATTGTTTCTAGAATTGTC  850

seq1  TGCCCTAGTATTGTTATCTAGTTCCTAATAGTAGCAATCATTTAAAGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAGTATTGTTATCTAGTTCCTAATAGTAGCAATCATTTAAAGGAA  900

seq1  CTTAAAAAAAACATTTTCTTGCAAATACTTATATACTGCTACTGGTATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAAAACATTTTCTTGCAAATACTTATATACTGCTACTGGTATTG  950

seq1  AATAATTTGTCTTTTGCTCAGTGGAAGTTCTTATGCATTTAAAAAAGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGTCTTTTGCTCAGTGGAAGTTCTTATGCATTTAAAAAAGGCA  1000

seq1  GGAATATATAATAATTTGCACACTGTAACTGGGAATTTTCAGAGGAAATA  1050
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GG-ATATATAATAATTTGCACACTGTAACTGGGAATTTTCAGAGGAAAT-  1048

seq1  AAGACATTTCAATGCCTTTCAAATCATAGTATTCAAATGATGTTACATCA  1100
      |||||||||| |||| |||||||||||||||||| ||||||| |||||||
seq2  AAGACATTTC-ATGCTTTTCAAATCATAGTATTC-AATGATG-TACATCA  1095

seq1  TTCACTTC-ATAAATCTTTGCTGGGCTCCTGCTTCTATGGCAG-ATACTA  1148
       ||||||| ||||||| |||||||||| ||||||||||||||| ||||||
seq2  -TCACTTCAATAAATC-TTGCTGGGCT-CTGCTTCTATGGCAGAATACTA  1142

seq1  TGCTGACACTGAAGTGAGCTAGTAAGGCCTGTGCTTTTAAGGTTCCTATT  1198
      ||||||  ||||| ||||||||||  | |||||||||  ||  |||||||
seq2  TGCTGAACCTGAA-TGAGCTAGTA--GGCTGTGCTTT--AG--TCCTATT  1185

seq1: chr10_100430465_100431678
seq2: B6Ng01-347L04.g_67_1259 (reverse)

seq1  TCCCCAAATGTGCATCATATTAATATAT-GAATGCCAAATTGATTCACGC  49
      |||||||||||| ||||    | ||||| ||||||  || ||| || |||
seq2  TCCCCAAATGTGGATCA----ATTATATGGAATGC--AACTGAATC-CGC  43

seq1  TAAGCTTTCCCTGATTGTTTTTAGGCTGTTTGGCTTAGAATATTACCATA  99
      | |||||  ||||| || |||||| |||||  ||||||||||||||||||
seq2  T-AGCTT--CCTGAATG-TTTTAGCCTGTT--GCTTAGAATATTACCATA  87

seq1  ATGATATGATCTAAAATGTTATAG-AAATA-TTTTATTTATATGATTTTC  147
      ||||| |||||| ||||| ||||| ||||| |||||||||||||| ||| 
seq2  ATGAT-TGATCT-AAATG-TATAGAAAATATTTTTATTTATATGA-TTTG  133

seq1  CAGTTACATTTCATATTTGTATTAGGAACAGAAAGCAATATCTTGGTATC  197
      ||| ||||||||||||||||| |||| ||||||||||||||||  |||||
seq2  CAG-TACATTTCATATTTGTA-TAGG-ACAGAAAGCAATATCT--GTATC  178

seq1  AGATTGACTGACAGGAAGTTGGAGACATAGCAGACAGTACCTCTATTGGA  247
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  AGATTGACTGACAGGAAGT--GAGACATAGCAGACAGTACCTCTATTGGA  226

seq1  GCACTGTACCACCCACAAGCTCAGAGTGTTATCCCTATGGACCTTGTGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTACCACCCACAAGCTCAGAGTGTTATCCCTATGGACCTTGTGAC  276

seq1  ATTAGCATAGAGATCATAACCTTCTTGCCGTCTCCCAGAAACAGGATTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCATAGAGATCATAACCTTCTTGCCGTCTCCCAGAAACAGGATTTG  326

seq1  TATATAATACTTTTCAAGATGTCTGAAATTTTCCTTCTCAAGCAGATACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATACTTTTCAAGATGTCTGAAATTTTCCTTCTCAAGCAGATACA  376

seq1  AGCTCAGAAGACACAACACCATTTCTTCAGAGAGTCACACAGCTACATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGAAGACACAACACCATTTCTTCAGAGAGTCACACAGCTACATTT  426

seq1  TTCTTCTTCTGTAAGACTCCACGTAGCCCGCACAACACCCTGAGCAAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTGTAAGACTCCACGTAGCCCGCACAACACCCTGAGCAAAAT  476

seq1  AGGGGTGTTTGATTGTTGCTGGTTCTGTGCAGTCCATACAACAGGCAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGTTTGATTGTTGCTGGTTCTGTGCAGTCCATACAACAGGCAGCT  526

seq1  CACTAGCTAGCCCAGAGCAGTGTTATCTTTAAAGCCAGCAACAGTTTTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCTAGCCCAGAGCAGTGTTATCTTTAAAGCCAGCAACAGTTTTGT  576

seq1  TGTCTGATAGGTGGACTATACTGTCTCCACGAGATCTGAGTTCTCTTATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATAGGTGGACTATACTGTCTCCACGAGATCTGAGTTCTCTTATA  626

seq1  TATACATATAAGTATAGTATATATACATTCCCTTGCCATTTTGCTATAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATAAGTATAGTATATATACATTCCCTTGCCATTTTGCTATAAA  676

seq1  TTTTTCTTCAGATCGAACTTTACCTTGTTGAATGATAATGTATTTATCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCAGATCGAACTTTACCTTGTTGAATGATAATGTATTTATCAT  726

seq1  ATTCATCACCGTTGCAATTGTTGCATCTGTTATAATCCTGACTATTATGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCACCGTTGCAATTGTTGCATCTGTTATAATCCTGACTATTATGG  776

seq1  GTTCCTTTCAGCAATCTCAGAATATTACTTTAAAATTTCAACAAAGCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTCAGCAATCTCAGAATATTACTTTAAAATTTCAACAAAGCTTT  826

seq1  GTTTGCTGAGAATTCTTGACTGTATCACAATCCTCACTTGAATTTATCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTGAGAATTCTTGACTGTATCACAATCCTCACTTGAATTTATCTT  876

seq1  CCTATGACAGTGCAGCAGACATGTAATCTGTTGTTAGAAGCCAAAAATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGACAGTGCAGCAGACATGTAATCTGTTGTTAGAAGCCAAAAATTT  926

seq1  AACAAATACAGATATGGAATGGCAATTTTGGCCACTGGCATTCATAAATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATACAGATATGGAATGGCAATTTTGGCCACTGGCATTCATAAATT  976

seq1  ATTACTTAATTTCACATAATGTTAATATTTTAAAACATTTCCTATATATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTAATTTCACATAATGTTAATATTTTAAAACATTTCCTATATATG  1026

seq1  AATGATAACCATCAATTTACCTGAATACCAGGAGACCAACACTTTTACTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACCATCAATTTACCTGAATACCAGGAGACCAACACTTTTACTG  1076

seq1  ATCTAAAATCTAACACCTTTCAGTTTCAATAGTAGTTTCTGATTTTAGGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAATCTAACACCTTTCAGTTTCAATAGTAGTTTCTGATTTTAGGA  1126

seq1  GACATGTTTACTAAAGATAATTTTAGCTTCAGTGTGAATATCTGGCTTTT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTTACTAAAGATAATTTTAGCTTCAGTGTGAATATCTGGCTTTT  1176

seq1  TGGTAGATGTAGAATTC  1214
      |||||||||||||||||
seq2  TGGTAGATGTAGAATTC  1193