BAC Information

Click to search

BAC

Clone NameB6Ng01-348F07
Chromosome10 (Build37)
Map Location 17,254,569 - 17,376,522
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348F07.bB6Ng01-348F07.g
ACCGA129654GA129655
length1,136221
definitionB6Ng01-348F07.b B6Ng01-348F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,375,367 - 17,376,522)(17,254,569 - 17,254,790)
sequence
gaattcttaggtgccactggctgatctaagccttggcatgtggatcggat
cattcagcctgcgtaatagcctctagttctggggctcttgcgatctaccg
attttgagtaaagagcctaacagtctacgtaataactcacacgaggtaaa
atgtatttcaaacccagacagtctgagtccagagtgcgtgctatgagtca
cactttcctgccttcccaaggagtagcagctagcttccactgtcttccca
ctttgtgtgtggcttatctctgcgttgtctcctccaggctccagaacact
gctaggaatgagtattattctaataccacataattctgatagcgactctc
agaaggtgcaaacggaggtaagggtaggttaaggaacctgcccaagactg
cagagcccacaaagtagccaagtcggaatgcactttgtgttatttacccc
tattacagacattcccaaattactctgtaattaaccacttaggtgctttc
atcttctgctcttccgtcggcagcttgaaggcccagatgatgtcattttc
cacttttccttcccttttatcgggtcacaaaatgcaagttcaatcaatgt
ggggtggagagagcccaacggacatttggactgctgctgtctctgggtcc
cttttctagggcaactggtacatgcctgctttatttcatgttttccgtag
cgaatcgcttttgtgtgcagtgttacgaggcgaagaaaagtgctgtctct
gcaaagtttctttttgagtaaaaatagtttctgttcccaaaggtaaaata
attgctaccctgacagactgtaactgagcctcgttccctttagctgttgt
tagcttcaggtccagatggaaggtttactgaagagacccttaatctgttc
ggagacaaacaccatgtttctcaggctacaatgagctcaagtcacactgg
tttgaaagaggacattttctgctagtgagactcacgtgtttggtatcttt
acacccctcccctctgtcagtttctttctctttcactctctctctccttc
tgtcttgttctgctctctgctatagcagtgtactgaacgctgatgttaca
aacacacacccaatattgcactcgattttgagattt
tataattgtctctgcatcagagatgtattagtgtgggtaaggtcactgtt
atctactttgatattgtgaatgtgtagcttgtctttctcaggcatggtcc
ataatgtgaaatgacttgtgtagactaagggtcaagtgtgtgtgtatgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgtctgtaaactttct
gcatgtgtgtatgttctatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17375367_17376522
seq2: B6Ng01-348F07.b_45_1180 (reverse)

seq1  AAATCTTCAAAAATCGAGTGC-ATATTGGGTTGTGTG-TGGTAACATCAG  48
      ||||||   |||||||||||| |||||||| |||||| | ||||||||||
seq2  AAATCT--CAAAATCGAGTGCAATATTGGG-TGTGTGTTTGTAACATCAG  47

seq1  CGTTCAGTACAACCTGGCTATTAGGCAAGAAGAGCAGGAACAAGGAACAA  98
      |||||||||||  || |||||   |||   |||||| |||||||  ||| 
seq2  CGTTCAGTACA--CT-GCTAT--AGCA--GAGAGCA-GAACAAG--ACA-  86

seq1  GGAAGGGAGAGAGAGAGGTGGAAAGAAGAAAGGAAACTGACAGAGGGGGA  148
       ||| ||||||||||||   ||||| ||||| |||||||||||| |||||
seq2  -GAA-GGAGAGAGAGAG--TGAAAG-AGAAA-GAAACTGACAGA-GGGGA  129

seq1  GGGGTGTAAAGATACCAAACACGTGAGTCTCACTAGCAGAAAATGTCCTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTAAAGATACCAAACACGTGAGTCTCACTAGCAGAAAATGTCCTC  179

seq1  TTTCAAACCAGTGTGACTTGAGCTCATTGTAGCCCTGAGAAACATGGTGT  248
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCAAACCAGTGTGACTTGAGCTCATTGTAG-CCTGAGAAACATGGTGT  228

seq1  TTGTCTCCGAACAGATTAAGGGTCTCTTCAGTAAACCTTCCATCTGGACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCGAACAGATTAAGGGTCTCTTCAGTAAACCTTCCATCTGGACC  278

seq1  TGAAGCTAACAACAGCTAAAGGGAACGAGGCTCAGTTACAGTCTGTCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTAACAACAGCTAAAGGGAACGAGGCTCAGTTACAGTCTGTCAGG  328

seq1  GTAGCAATTATTTTACCTTTGGGAACAGAAACTATTTTTACTCAAAAAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAATTATTTTACCTTTGGGAACAGAAACTATTTTTACTCAAAAAGA  378

seq1  AACTTTGCAGAGACAGCACTTTTCTTCGCCTCGTAACACTGCACACAAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCAGAGACAGCACTTTTCTTCGCCTCGTAACACTGCACACAAAA  428

seq1  GCGATTCGCTACGGAAAACATGAAATAAAGCAGGCATGTACCAGTTGCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTCGCTACGGAAAACATGAAATAAAGCAGGCATGTACCAGTTGCCC  478

seq1  TAGAAAAGGGACCCAGAGACAGCAGCAGTCCAAATGTCCGTTGGGCTCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGGGACCCAGAGACAGCAGCAGTCCAAATGTCCGTTGGGCTCTC  528

seq1  TCCACCCCACATTGATTGAACTTGCATTTTGTGACCCGATAAAAGGGAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCACATTGATTGAACTTGCATTTTGTGACCCGATAAAAGGGAAG  578

seq1  GAAAAGTGGAAAATGACATCATCTGGGCCTTCAAGCTGCCGACGGAAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGAAAATGACATCATCTGGGCCTTCAAGCTGCCGACGGAAGAG  628

seq1  CAGAAGATGAAAGCACCTAAGTGGTTAATTACAGAGTAATTTGGGAATGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGAAAGCACCTAAGTGGTTAATTACAGAGTAATTTGGGAATGT  678

seq1  CTGTAATAGGGGTAAATAACACAAAGTGCATTCCGACTTGGCTACTTTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATAGGGGTAAATAACACAAAGTGCATTCCGACTTGGCTACTTTGT  728

seq1  GGGCTCTGCAGTCTTGGGCAGGTTCCTTAACCTACCCTTACCTCCGTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGCAGTCTTGGGCAGGTTCCTTAACCTACCCTTACCTCCGTTTG  778

seq1  CACCTTCTGAGAGTCGCTATCAGAATTATGTGGTATTAGAATAATACTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTGAGAGTCGCTATCAGAATTATGTGGTATTAGAATAATACTCA  828

seq1  TTCCTAGCAGTGTTCTGGAGCCTGGAGGAGACAACGCAGAGATAAGCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGCAGTGTTCTGGAGCCTGGAGGAGACAACGCAGAGATAAGCCAC  878

seq1  ACACAAAGTGGGAAGACAGTGGAAGCTAGCTGCTACTCCTTGGGAAGGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAGTGGGAAGACAGTGGAAGCTAGCTGCTACTCCTTGGGAAGGCA  928

seq1  GGAAAGTGTGACTCATAGCACGCACTCTGGACTCAGACTGTCTGGGTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTGTGACTCATAGCACGCACTCTGGACTCAGACTGTCTGGGTTTG  978

seq1  AAATACATTTTACCTCGTGTGAGTTATTACGTAGACTGTTAGGCTCTTTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATTTTACCTCGTGTGAGTTATTACGTAGACTGTTAGGCTCTTTA  1028

seq1  CTCAAAATCGGTAGATCGCAAGAGCCCCAGAACTAGAGGCTATTACGCAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATCGGTAGATCGCAAGAGCCCCAGAACTAGAGGCTATTACGCAG  1078

seq1  GCTGAATGATCCGATCCACATGCCAAGGCTTAGATCAGCCAGTGGCACCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATGATCCGATCCACATGCCAAGGCTTAGATCAGCCAGTGGCACCT  1128

seq1  AAGAATTC  1156
      ||||||||
seq2  AAGAATTC  1136

seq1: chr10_17254569_17254790
seq2: B6Ng01-348F07.g_72_292

seq1  TATAATTGTCTCTGCATCAGAGATGTATTAGTGTGGGTAAGGTCACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGTCTCTGCATCAGAGATGTATTAGTGTGGGTAAGGTCACTGTT  50

seq1  ATCTACTTTGATATTGTGAATGTGTAGCTTGTCTTTCTCAGGCATGGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTTGATATTGTGAATGTGTAGCTTGTCTTTCTCAGGCATGGTCC  100

seq1  ATAATGTGAAATGACTTGTGTAGACTAAGGGTCAAGTGTGTGTGTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGAAATGACTTGTGTAGACTAAGGGTCAAGTGTGTGTGTATGTG  150

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTCTGTCTGTCTGTC  200
      |||||||||||||||||||||||||||||||||| ||||||    || ||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTCTGT-AAACTTTC  199

seq1  TGCATGTGTGTATGTTCTATAT  222
      ||||||||||||||||||||||
seq2  TGCATGTGTGTATGTTCTATAT  221