BAC Information

Click to search

BAC

Clone NameB6Ng01-349N13
Chromosome10 (Build37)
Map Location 88,396,223 - 88,540,096
singlet/doubletdoublet
Overlap geneTmem16d
Upstream geneTyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8
Downstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349N13.bB6Ng01-349N13.g
ACCGA130710GA130711
length1,1651,136
definitionB6Ng01-349N13.b B6Ng01-349N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,538,914 - 88,540,096)(88,396,223 - 88,397,363)
sequence
gaattccaacatgagcttcatgctttctggcccactggctgtttttcttc
tttgcgtggctgtagtctgagattggctgtatagagacagagatgtgtct
gtgacagcagcctaggggagctcggattcgctgtgttcttgcacagagat
atgggctattctccctgccagggaggtgggagcaatccctgtggggtggc
aatcttacagtcttgggagccaggctagccacagccctggcctctagggc
aggtcagactaacactgtaattgagagctgcatctgcataacacattccc
tcaagctgttctgtacagaccaacatataattatttacctgattcagaag
tcctacgtttgggttgtcaactgatttctttgctcaaggtcttcataggc
caaaatcatataggtcagctgggctcttatctggaccactaggaaggtaa
tctgcatgcaggcttctttaggttgctgacataatcccagttgatgccat
tagaggggtaaagtcaccatccttgcaggctgctggtgagaagtcagtct
tgacttctgaaagtgaggcatcccagtcctacttctcctcaaaggcagcc
atgagggtcacattgttcttttgctctcatctccccttctgtgatgtctc
tcctgcctccacctagagatggtcctctggcctcttaacttctcatgttg
ttaatttgatcccatctgactcatccagaatgttcttctgtaagccctac
aacccctgcttctttcttcgaaagctcttgtatcacagagcctaatttac
aaattggtggcactaacgggagaacacctttgggagcagtctgccaagca
ggagaaatcatgggggctgctggctttgtttgactgctggtgtctattac
tgtgaacagcgtatctcacggaataggtcttctggaacctggagagtcca
ggctccattttgcatctgcacagtggtccagcccaacatccctatgccca
acaagtgtcttttatttggaaaaaaaatgtttaatgtttccttcatgtag
tgtctgctttgctaattcttgttctgtttaaaacatacatctcagtagcc
ggggctgggctggactcttatcaggctactgttttccaagctggtttata
gccctatagtgtttt
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacaac
agatgctggcgtggatgtggagaaagagaaacactcctccattgttggtg
ggattgtaagcttgtacaaccaaccactctggaaattagtctggtggttc
ctcagaaaattggacataggacttttttctaaaagaactgaagcttccat
tttctactgttgaatttcagtgttatactgtggttgtgcaattttttttt
tttttttttttttgagacagggtttctctgtgtagtcctggctgtcctgg
aactcactccgtagatcaggctggcctcaaactcagaaatccacctgcct
ctgcctcccaagtgttgggattaaaggtgtgtgccaccactgcctggcat
ggttgtgcacttgatcttcagtgacccgttgcattgtggggaagagaagc
agatgagtgttgggcttcattcagccaccttgtaaaacccttggaaaatc
aaactgcttatttctgaaccccatcctagtatcttcactgttttcctgcc
agagttgctcatacccgactccatgagcttttgtgaaggtagttgttatt
caagtggctgctgcatttggcatcccaatggaggaccttagctgccatct
tgccttgccctacattttaacaagtaacccactttttactgaatgacttc
aattctttttaatggtgataaagctgaagaccaagattttcatgtctggg
cctttggggggtttcttcagatctgaaattatagcagaccattgtctgtt
gccctttgttaaaagcaatgattcaaggagggaagcatgtttgagtcttt
tatttcaatagttgaatcagtattaagaccaaagctgcactcattgtgac
tggagtagaattttgggtatgggcatgttaaagatttagcactgaacaga
atttgctatcattaaaacacctgtatttttcctttcttcctttcttttaa
catcatctattaaccacaatgtaacttgagattcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88538914_88540096
seq2: B6Ng01-349N13.b_51_1215 (reverse)

seq1  AAAACACTATAAGGCTATAAACCAAGCCCTTGGGAAACAGTAGCTGGATT  50
      ||||||||||| ||||||||||||    ||||| ||||||||||  || |
seq2  AAAACACTATAGGGCTATAAACCA---GCTTGGAAAACAGTAGCCTGA-T  46

seq1  AAGAGTTCAAGGCCAGCCCCGGGCTACCTGAGATTGTATGTTATAAAACA  100
      ||||| || || |||||||| ||||| |||||| |||||||| ||||   
seq2  AAGAG-TCCAGCCCAGCCCC-GGCTA-CTGAGA-TGTATGTTTTAAA--C  90

seq1  AGAACAAAGAAATAAGCAAAGCAGAACACTACAATGAAAGGAAAACATTA  150
      |||||||   ||| |||||||||| ||||||| |||||  | ||||||| 
seq2  AGAACAA--GAATTAGCAAAGCAG-ACACTAC-ATGAA--GGAAACATT-  133

seq1  AAACATTTTTTTTTCAAATAAAAAGACACTTGTTGGGCATAGGGATGTTG  200
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  AAACATTTTTTTTCCAAAT-AAAAGACACTTGTTGGGCATAGGGATGTTG  182

seq1  GGCTGGACCACTGTGCAGATGCAAAATGGAGCCTGGACTCTCCAGGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGACCACTGTGCAGATGCAAAATGGAGCCTGGACTCTCCAGGTTCC  232

seq1  AGAAGACCTATTCCGTGAGATACGCTGTTCACAGTAATAGACACCAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCTATTCCGTGAGATACGCTGTTCACAGTAATAGACACCAGCAG  282

seq1  TCAAACAAAGCCAGCAGCCCCCATGATTTCTCCTGCTTGGCAGACTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAAGCCAGCAGCCCCCATGATTTCTCCTGCTTGGCAGACTGCTC  332

seq1  CCAAAGGTGTTCTCCCGTTAGTGCCACCAATTTGTAAATTAGGCTCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTGTTCTCCCGTTAGTGCCACCAATTTGTAAATTAGGCTCTGTG  382

seq1  ATACAAGAGCTTTCGAAGAAAGAAGCAGGGGTTGTAGGGCTTACAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGAGCTTTCGAAGAAAGAAGCAGGGGTTGTAGGGCTTACAGAAGA  432

seq1  ACATTCTGGATGAGTCAGATGGGATCAAATTAACAACATGAGAAGTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGGATGAGTCAGATGGGATCAAATTAACAACATGAGAAGTTAAG  482

seq1  AGGCCAGAGGACCATCTCTAGGTGGAGGCAGGAGAGACATCACAGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGGACCATCTCTAGGTGGAGGCAGGAGAGACATCACAGAAGGG  532

seq1  GAGATGAGAGCAAAAGAACAATGTGACCCTCATGGCTGCCTTTGAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGAGCAAAAGAACAATGTGACCCTCATGGCTGCCTTTGAGGAGA  582

seq1  AGTAGGACTGGGATGCCTCACTTTCAGAAGTCAAGACTGACTTCTCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGACTGGGATGCCTCACTTTCAGAAGTCAAGACTGACTTCTCACCA  632

seq1  GCAGCCTGCAAGGATGGTGACTTTACCCCTCTAATGGCATCAACTGGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTGCAAGGATGGTGACTTTACCCCTCTAATGGCATCAACTGGGAT  682

seq1  TATGTCAGCAACCTAAAGAAGCCTGCATGCAGATTACCTTCCTAGTGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCAGCAACCTAAAGAAGCCTGCATGCAGATTACCTTCCTAGTGGTC  732

seq1  CAGATAAGAGCCCAGCTGACCTATATGATTTTGGCCTATGAAGACCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGAGCCCAGCTGACCTATATGATTTTGGCCTATGAAGACCTTGA  782

seq1  GCAAAGAAATCAGTTGACAACCCAAACGTAGGACTTCTGAATCAGGTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAATCAGTTGACAACCCAAACGTAGGACTTCTGAATCAGGTAAA  832

seq1  TAATTATATGTTGGTCTGTACAGAACAGCTTGAGGGAATGTGTTATGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATATGTTGGTCTGTACAGAACAGCTTGAGGGAATGTGTTATGCAG  882

seq1  ATGCAGCTCTCAATTACAGTGTTAGTCTGACCTGCCCTAGAGGCCAGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTCTCAATTACAGTGTTAGTCTGACCTGCCCTAGAGGCCAGGGC  932

seq1  TGTGGCTAGCCTGGCTCCCAAGACTGTAAGATTGCCACCCCACAGGGATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTAGCCTGGCTCCCAAGACTGTAAGATTGCCACCCCACAGGGATT  982

seq1  GCTCCCACCTCCCTGGCAGGGAGAATAGCCCATATCTCTGTGCAAGAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACCTCCCTGGCAGGGAGAATAGCCCATATCTCTGTGCAAGAACA  1032

seq1  CAGCGAATCCGAGCTCCCCTAGGCTGCTGTCACAGACACATCTCTGTCTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAATCCGAGCTCCCCTAGGCTGCTGTCACAGACACATCTCTGTCTC  1082

seq1  TATACAGCCAATCTCAGACTACAGCCACGCAAAGAAGAAAAACAGCCAGT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGCCAATCTCAGACTACAGCCACGCAAAGAAGAAAAACAGCCAGT  1132

seq1  GGGCCAGAAAGCATGAAGCTCATGTTGGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  GGGCCAGAAAGCATGAAGCTCATGTTGGAATTC  1165

seq1: chr10_88396223_88397363
seq2: B6Ng01-349N13.g_68_1203

seq1  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAAC  150

seq1  AGATGCTGGCGTGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGTGGATGTGGAGAAAGAGAAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGTAAGCTTGTACAACCAACCACTCTGGAAATTAGTCTGGTGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTAAGCTTGTACAACCAACCACTCTGGAAATTAGTCTGGTGGTTC  250

seq1  CTCAGAAAATTGGACATAGGACTTTTTTCTAAAAGAACTGAAGCTTCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAATTGGACATAGGACTTTTTTCTAAAAGAACTGAAGCTTCCAT  300

seq1  TTTCTACTGTTGAATTTCAGTGTTATACTGTGGTTGTGCAATTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGTTGAATTTCAGTGTTATACTGTGGTTGTGCAATTTTTTTTT  350

seq1  TTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTGG  400

seq1  AACTCACTCCGTAGATCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCCGTAGATCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCT  450

seq1  CTGCCTCCCAAGTGTTGGGATTAAAGGTGTGTGCCACCACTGCCTGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCAAGTGTTGGGATTAAAGGTGTGTGCCACCACTGCCTGGCAT  500

seq1  GGTTGTGCACTTGATCTTCAGTGACCCGTTGCATTGTGGGGAAGAGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGCACTTGATCTTCAGTGACCCGTTGCATTGTGGGGAAGAGAAGC  550

seq1  AGATGAGTGTTGGGCTTCATTCAGCCACCTTGTAAAACCCTTGGAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTGTTGGGCTTCATTCAGCCACCTTGTAAAACCCTTGGAAAATC  600

seq1  AAACTGCTTATTTCTGAACCCCATCCTAGTATCTTCACTGTTTTCCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTTATTTCTGAACCCCATCCTAGTATCTTCACTGTTTTCCTGCC  650

seq1  AGAGTTGCTCATACCCGACTCCATGAGCTTTTGTGAAGGTAGTTGTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCTCATACCCGACTCCATGAGCTTTTGTGAAGGTAGTTGTTATT  700

seq1  CAAGTGGCTGCTGCATTTGGCATCCCAATGGAGGACCTTAGCTGCCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGCTGCTGCATTTGGCATCCCAATGGAGGACCTTAGCTGCCATCT  750

seq1  TGCCTTGCCCTACATTTTAACAAGTAACCCACTTTTTACTGAATGACTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCCCTACATTTTAACAAGTAACCCACTTTTTACTGAATGACTTC  800

seq1  AATTCTTTTTAATGGTGAT-AAGCTGAAGACCAAGATTTTCATGTCT-GG  848
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  AATTCTTTTTAATGGTGATAAAGCTGAAGACCAAGATTTTCATGTCTGGG  850

seq1  CCTTT-GGGGGTTTCTTCAGATCTGAAATTATAGCAGACCATTGTCTGTT  897
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGGGGTTTCTTCAGATCTGAAATTATAGCAGACCATTGTCTGTT  900

seq1  GCCCTTTGTTAAAAGCAATGATTCAA-GAGGGAAGCATGTTTGAGTCTTT  946
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCCCTTTGTTAAAAGCAATGATTCAAGGAGGGAAGCATGTTTGAGTCTTT  950

seq1  TATTTCAATAGTTGAATCAGTATTAAGACCAAAGCTGCACTCATTGTGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TATTTCAATAGTTGAATCAGTATTAAGACCAAAGCTGCACTCATTGT-GA  999

seq1  CTGGAGTAGAATTTTGGGTATGGGCATGTTAAAAGATTTAGCACTGAACA  1046
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGGAGTAGAATTTTGGGTATGGGCATGTT-AAAGATTTAGCACTGAACA  1048

seq1  GATTTTGCTATTCATTAAAACACCTGTATTTTTTCTTTTCTTCTCTTTTC  1096
      || ||||||| ||||||||||||||||| |||||| ||||||| ||||  
seq2  GAATTTGCTA-TCATTAAAACACCTGTA-TTTTTCCTTTCTTC-CTTT--  1093

seq1  TTTTTAACATCATCCTATTAA-CAC-ATGTAAAACTTTGAGATTCAG  1141
       |||||||||||| ||||||| ||| ||||||    |||||||||||
seq2  CTTTTAACATCAT-CTATTAACCACAATGTAA---CTTGAGATTCAG  1136