BAC Information

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BAC

Clone NameB6Ng01-350G24
Chromosome10 (Build37)
Map Location 52,067,984 - 52,068,875
singlet/doubletsinglet
Overlap geneGopc
Upstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, LOC625811
Downstream geneEG668294, Nepn, D10Ertd438e, EG629689, Zfa, Slc35f1, Pln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350G24.bB6Ng01-350G24.g
ACCGA131106GA131107
length1,212896
definitionB6Ng01-350G24.b B6Ng01-350G24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctggtctg
atagaaagatggaatggccttttgaagacgcagttacagtgccaattagg
tggtaacagcttggaaggttggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaaaggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcctagaagttttggctccagagaggggaatgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggatgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggagaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttacaaatgcgtttgcgat
tgtacgaggaatagttatatcatgttaggcgtatttacaaccttgttatt
gtttcatgtgaacatgagatattatttgtgtcagttgacaaggggtggat
tgtagtggtttattcctggttgtcaacttgactatatttgggatgactac
aatccgggaattgggacgctcacagtgatcccttattcttggaagctttg
agaatcattatcttggatctggattggaagatcttgagccatagtggcta
tgattccagagattgattctcgaataaggacacaccttaactggctcagc
atttcatctggggattaagggattgagtgcgacgttcatcagtatgactt
acgagtatggca
gaattctctttatgtcattaaagctgctatagaagttgtttctattcctt
gacgcttatggatgtcatttgatcatatttgctgaaaagttatatttact
ccttcccatagctacttagctttggacaaattatgtccatcctctgggca
gcagtctcctaagctctatgatggaaatggagctgtagtgcgtgtatctc
agaataggataagttcttaagatcaaccgcaagaatgacaggcacatctt
gccaatatagggtgtcagggaatactggtaggagaagactgattttggtc
atagaatatggactgaaaggatcattagaattcctctagcccagtttgaa
gagactggtcagtggttaaaggcacttgctgctcttatagaggacccaga
ttcaactcccagcgctcacatgatggtcagtagccatttgcaattctagt
tctgggattgatcctaagccctcttttgcttccaagggcacggacattca
tgtaggcaaaacacacatatacataatataaaataattataataaatgtt
aaagatattaaactgcaattcctggagagcagttgcacagcaaatgattt
atagaataacgatccatatttagagtcagatttgttatctcatgtcctta
cagcctctgttttcctctgggaatagagttgaggggattaaaacaatgct
ggtggaacatgaagatgtttgggtcatcaacagagtgtactagtgtagag
tgattgtagatggatgtgactgtacagacaagcagcttagctaatctcta
gtgacgtactttactgcaggaaccacccctatggcatcaatttcaatagc
ttcagtaaagggaggacttactgataatggatgggggtttggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_52067984_52068875
seq2: B6Ng01-350G24.g_67_962 (reverse)

seq1  CCAACCAA--CCCCATCCATTATCAGTAAGTCCTCCC-TTACTGAAGCTA  47
      ||||||||  ||||||||||||||||||||||||||| ||||||||||||
seq2  CCAACCAAACCCCCATCCATTATCAGTAAGTCCTCCCTTTACTGAAGCTA  50

seq1  TTG-AATTGATGCCATAGGGGTGGTTCCTGCAGTAAAGTACGTCACTAGA  96
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTGATGCCATAGGGGTGGTTCCTGCAGTAAAGTACGTCACTAGA  100

seq1  GATTAGCTAAGCTGCTTGTCTGTACAGTCACATCCATCTACAATCACTCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCTAAGCTGCTTGTCTGTACAGTCACATCCATCTACAATCACTCT  150

seq1  ACACTAGTACACTCTGTTGATGACCCAAACATCTTCATGTTCCACCAGCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGTACACTCTGTTGATGACCCAAACATCTTCATGTTCCACCAGCA  200

seq1  TTGTTTTAATCCCCTCAACTCTATTCCCAGAGGAAAACAGAGGCTGTAAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAATCCCCTCAACTCTATTCCCAGAGGAAAACAGAGGCTGTAAG  250

seq1  GACATGAGATAACAAATCTGACTCTAAATATGGATCGTTATTCTATAAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAGATAACAAATCTGACTCTAAATATGGATCGTTATTCTATAAAT  300

seq1  CATTTGCTGTGCAACTGCTCTCCAGGAATTGCAGTTTAATATCTTTAACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGTGCAACTGCTCTCCAGGAATTGCAGTTTAATATCTTTAACA  350

seq1  TTTATTATAATTATTTTATATTATGTATATGTGTGTTTTGCCTACATGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATAATTATTTTATATTATGTATATGTGTGTTTTGCCTACATGAA  400

seq1  TGTCCGTGCCCTTGGAAGCAAAAGAGGGCTTAGGATCAATCCCAGAACTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCGTGCCCTTGGAAGCAAAAGAGGGCTTAGGATCAATCCCAGAACTA  450

seq1  GAATTGCAAATGGCTACTGACCATCATGTGAGCGCTGGGAGTTGAATCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCAAATGGCTACTGACCATCATGTGAGCGCTGGGAGTTGAATCTG  500

seq1  GGTCCTCTATAAGAGCAGCAAGTGCCTTTAACCACTGACCAGTCTCTTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCTATAAGAGCAGCAAGTGCCTTTAACCACTGACCAGTCTCTTCA  550

seq1  AACTGGGCTAGAGGAATTCTAATGATCCTTTCAGTCCATATTCTATGACC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGCTAGAGGAATTCTAATGATCCTTTCAGTCCATATTCTATGACC  600

seq1  AAAATCAGTCTTCTCCTACCAGTATTCCCTGACACCCTATATTGGCAAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTCTTCTCCTACCAGTATTCCCTGACACCCTATATTGGCAAGA  650

seq1  TGTGCCTGTCATTCTTGCGGTTGATCTTAAGAACTTATCCTATTCTGAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTGTCATTCTTGCGGTTGATCTTAAGAACTTATCCTATTCTGAGA  700

seq1  TACACGCACTACAGCTCCATTTCCATCATAGAGCTTAGGAGACTGCTGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCACTACAGCTCCATTTCCATCATAGAGCTTAGGAGACTGCTGCC  750

seq1  CAGAGGATGGACATAATTTGTCCAAAGCTAAGTAGCTATGGGAAGGAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATGGACATAATTTGTCCAAAGCTAAGTAGCTATGGGAAGGAGTA  800

seq1  AATATAACTTTTCAGCAAATATGATCAAATGACATCCATAAGCGTCAAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAACTTTTCAGCAAATATGATCAAATGACATCCATAAGCGTCAAGG  850

seq1  AATAGAAACAACTTCTATAGCAGCTTTAATGACATAAAGAGAATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAACAACTTCTATAGCAGCTTTAATGACATAAAGAGAATTC  896