BAC Information

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BAC

Clone NameMSMg01-045A17
Chromosome10 (Build37)
Map Location 21,353,020 - 21,353,310
singlet/doubletsinglet
Overlap genenone
Upstream genePde7b, LOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik
Downstream geneEG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045A17.T7 (MSMg01no045_a17.b1)MSMg01-045A17.TJ (MSMg01no045_a17.g1)
ACCAG275774AG275775
length742700
length of high quality
(start - end)
479 (124 - 602)291 (60 - 350)
definitionCHROMAT_FILE: MSMg01no045_a17.b1 PHD_FILE: MSMg01no045_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:54 2005CHROMAT_FILE: MSMg01no045_a17.g1 PHD_FILE: MSMg01no045_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:04:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCNAAGNNCNCCNNNNNCCCCATAAAT
CNNCNTTCTATAATTGCGGCGCTATACGACTCCTATTTCGTATAAGCCGC
GGAATTCTCACCTGTATCAAACCGAATGGCAGAGAAGCACCTGAAAAAAT
GTTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGA
TTCCATCTCACACCAGTCGGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAAATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTGTACAACCACTCTGGGAATCAGTCTGGAGGTTCCTC
AAAAAATTGGACATAGTACTATCATAGGATCCCGCAATACCTCTCCTGGG
CATATATCCAGAAGATGTTCCAACTGGTAAGAAAGACACATGCTCCACAA
TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAAT
GGACTACTACTCAGGAATTTTATGAAATTCCTAGGCAAATGGATTGACCT
GGGGGAGGAGAGAGTACAGATATGTACTCACTGATAACTGGATATTAGCC
CAGAAACTTATAATACCCTATATACTAGATACATTCTTGCAAAACACATG
ATACTTCAATAAAAACGAAAAACCAAATGGTGGCCACTTTTG
TGGAGGACGCCCGGTTCCAACAACACTCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATTGAAGATTCTATATAATTAATTTAAAAAATAGGTTTATT
TAAAATCATTTCTCAAATTAGAAAGTTAAATTCAAGAAAGCTCCAATAAA
TGTACTTGAAAAGGGTCAAATTACTATGCAAGAGAAGTAGAGACTGTATT
CTAGGCAAGCATAATTACTGAAATATTTATGTTTTTCGGCTGATGGTCTG
AATAGCTAACAACTTTAATGTTTTATTACTCTGTTGCTATGCAGAACATT
CTACCTTGAGCATGGATTGACTTTCTCCCCTGATGACACCCTCCCCCCAG
CTCCTCCTAGAGCCCCTATCCTGTCCATCTCTCAACTCCCGGTCTTCTCT
TTATACCCTAGTGAGTCCCACCCAGTGCTTCCTTCATGCACATGGATATA
GGGCTGTCCACTGGAGCATGGTCCAACTACCCGAGGCCCCTTCAGCGAAG
AAAACTGACTCTCCCTATTCCAATTCTTTCAACTGCTGGGAATTCCTCAA
CGACGCGAAGTTGCCTCATGTCGCTGCTCCCCCAAAATTCCCTGCCCATA
TTTTCATCCCTACCTTGTATCGGGCTTTACGGCACCCCCCACCCGTGTCG
ACCATGTATTGCCCTTTCTGCTTGCGTATCTTCACGCCTTACTTTCCTGA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_a17.g1 MSMg01no045_a17.g1 CHROMAT_FILE:
MSMg01no045_a17.g1 PHD_FILE: MSMg01no045_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:54 2005
         (291 letters)



>mm_chr10_21352787_21353477
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgaagattctatataattaatttaaaaaataggtttatttaaaatcatttctcaaatt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 524 attgaagattctatataattaattaaaaaaataggtttatttaaaatcatttctcaaatt 465

                                                                       
Query: 61  agaaagttaaattcaagaaagctccaataaatgtacttgaaaagggtcaaattactatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 agaaagttaaattcaagaaagctccaataaatgtacttgaaaagggtcaaattactatgc 405

                                                                       
Query: 121 aagagaagtagagactgtattctaggcaagcataattactgaaatatttatgtttttcgg 180
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 404 aagagaagtagagactgtattcaagggaagcataattactgaaatatttatgtttttcgg 345

                                                                       
Query: 181 ctgatggtctgaatagctaacaactttaatgttttattactctgttgctatgcagaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctgatggtctgaatagctaacaactttaatgttttattactctgttgctatgcagaacat 285

                                                              
Query: 241 tctaccttgagcatggattgactttctcccctgatgacaccctccccccag 291
           ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 284 tctaccttgagcatgtattgactttctcccctgatgacaccctccccccag 234


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)