BAC Information

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BAC

Clone NameMSMg01-045E19
Chromosome10 (Build37)
Map Location 13,206,405 - 13,387,511
singlet/doubletdoublet
Overlap geneFuca2, Pex3, Deadc1, Aig1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475
Downstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045E19.T7 (MSMg01no045_e19.b1)MSMg01-045E19.TJ (MSMg01no045_e19.g1)
ACCAG275967AG275968
length749721
length of high quality
(start - end)
447 (121 - 567)122 (48 - 169)
definitionCHROMAT_FILE: MSMg01no045_e19.b1 PHD_FILE: MSMg01no045_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:13 2005CHROMAT_FILE: MSMg01no045_e19.g1 PHD_FILE: MSMg01no045_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,206,405 - 13,206,851)(13,387,390 - 13,387,511)
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACACTAAG
ANNGCATCTAAATTTGCGGCGCTATACGACTCCTATTCAATTGAGACCGC
GGAATTCACACTTTACTAACAAGTATTTGAATTGCTTCCCTTGATAGTCT
TTCATTTTTATGAAATTTATTCGGAACAGCATGGCAGGTAAGCGTCATTC
CCCAGACTCTGCAGTTTGCACACGACCTCACAGAGCATCAGTTTGCACCC
TGCTCAGTATGAGCTATGACCCACCATGCTTTGCTGGCATGCCATACTTT
TTAAAAAATTAAATTCATGAGAAAAAAAATCTTAAGTTTTCTTGTTAGAT
TAGCATTTTGTTTTGTTTTGTTTTTTGAGATAGGGTTTCTCTGTGTCACC
CTGGTTATCTTAAAACTCACTCTGTCAGCCAGGGTGGTCTCTAACTCAGA
GATCCGCCTGCTCCTGCCTGGAGTACTGGGATTAAAGGCTCTTACCTAGA
TTATCCTGTAAAATAAGATCTGATGACTGAATTTTTCCTTATGTGCCTAG
TAGCAAATTGTCTCCTGTGTGGGTGAACTGCATAGCCACAATCGGACTCT
TTCATTCCTCAGGGATCTTAGCCTTATTGATTGATTGTACGAGCACTTCC
GCTATCAAGAAGACAATAATTATTTCATATTTGGAGAAAAAGAACTTTGC
CCCCTCCACTGTCACGTCTCAATTTCATTTTTACTTTTTTTTGCTGCCG
GCTGGCCTACATATCAAGGTGACCTATAGAAGGTTTGCGGAATTCAGGCA
GTTCCTCCTCGCCTCCCAGTTTGAATGTGTGGCTTTCTCTCAGCAGCCAA
CTCTGATGATCACATGGATCGTAATGGTCCCTTGCTGAGTCCCCGCCTCC
CTCCTGAAAGAACACATGTTCCCTCCGGTGTTCAATGTGTCAGCTTGATG
TTTGGCACCTGTGTGCTTTGAGAAGTTCCAAGTGATTAAAGTTAAGGAAA
ACCAGTCTTGAGTTTTATTGAGGGAAATTCAGATTGAATTTTCTCCATGA
AAACATCACCATAAAATCAGGTACGTTGGAGAGAGTAGTTCTCACTGCAA
ACGAATCCCTTGCTACTGGCTTACGCCTGTGTCCTCAGATGTGCTAAAGG
GAAACTCCTTTGAAGTTGATTATTGGCTCGGCCTTCGTGGATAAATTCCT
CCTAAGATTTTTGACTTCAAAACTCTCAAGCAAAACACCTTTTCCCCCCA
TGACCTCCTTGAAGGAAATTCATTTCCCAAAAGGTTTGGCTCACTTTTGC
CCGCCTCTCCTAAGTAAGGGCTGGCCAGGAACCTTGGTACTCCTTGAAAA
AACTTTCTCTCGCACCGCCATTCCTCTGAACCCTATGTTTTTTACCTCTT
CCCCCCTCTGTTGCCACCATATTCTTTGGCTATATACCTTTCTTTTTCTC
CCCGCCCCTATCCTAACCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_e19.b1 MSMg01no045_e19.b1 CHROMAT_FILE:
MSMg01no045_e19.b1 PHD_FILE: MSMg01no045_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:13 2005
         (447 letters)



>mm_chr10_13206205_13207051
          Length = 847

 Score =  803 bits (415), Expect = 0.0
 Identities = 439/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtatttgaattgcttcccttgatagtctttcatttttatgaaatttattcggaacagc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aagtatttgaattgcttcccttgataatctttcatttttatgaaatttattcggaacagc 260

                                                                       
Query: 61  atggcaggtaagcgtcattccccagactctgcagtttgcacacgacctcacagagcatca 120
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 261 atggcaggtaagcgtcattccccagactgtgcagtttgcacatgacctcacagagcatca 320

                                                                       
Query: 121 gtttgcaccctgctcagtatgagctatgacccaccatgctttgctggcatgccatacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgcaccctgctcagtatgagctatgacccaccatgctttgctggcatgccatacttt 380

                                                                       
Query: 181 ttaaaaaattaaattcatgagaaaaaaaatcttaagttttcttgttagattagcattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaaaaaattaaattcatgagaaaaaaaatcttaagttttcttgttagattagcattttg 440

                                                                       
Query: 241 ttttgttttgttttttgagatagggtttctctgtgtcaccctggttatcttaaaactcac 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttgttttgtttttcgagatagggtttctctgtgtcaccctggttatcttaaaactcac 500

                                                                       
Query: 301 tctgtcagccagggtggtctctaactcagagatccgcctgctcctgcctggagtactggg 360
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgttggccagggtggtctctaactcagagatccgcctgctcctgcctggagtactggg 560

                                                                       
Query: 361 attaaaggctcttacctagattatcctgtaaaataagatctgatgactgaatttttcctt 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attaaaggctcttagctagattatcctgtaaaataagatctgatgactgaatttttcctt 620

                                      
Query: 421 atgtgcctagtagcaaattgtctcctg 447
           ||||||||||||||||||||| |||||
Sbjct: 621 atgtgcctagtagcaaattgtgtcctg 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no045_e19.g1 MSMg01no045_e19.g1 CHROMAT_FILE:
MSMg01no045_e19.g1 PHD_FILE: MSMg01no045_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:13 2005
         (122 letters)



>mm_chr10_13387190_13387711
          Length = 522

 Score =  228 bits (118), Expect = 8e-65
 Identities = 121/122 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagttcctcctcgcctcccagtttgaatgtgtggctttctctcagcagccaactctgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 322 gcagttcctcctcgcctcccagtttgaatgtgtggctttctctcagcagccaactccgat 263

                                                                       
Query: 61  gatcacatggatcgtaatggtcccttgctgagtccccgcctccctcctgaaagaacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gatcacatggatcgtaatggtcccttgctgagtccccgcctccctcctgaaagaacacat 203

             
Query: 121 gt 122
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)