MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-045K22
Chromosome	10 (Build37)
Map Location	22,489,789 - 22,489,957
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1
Downstream gene	Tcf21, Eya4
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC628133 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628133
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Sgk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20393 MGI:1340062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667254 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667254
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC665523 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665523
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	4930444G20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114671 MGI:2149738
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 17 Proteins

name	LOC100039992 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039992
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	E030030I06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319887 MGI:2442914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 2 Proteins

name	LOC665543 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 Proteins pseudo : _no_value

name	Ube2q2l (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:235392
definition	note : ubiquitin-conjugating enzyme E2Q 2-like pseudo : _no_value

name	Raet1e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:379043 MGI:2675273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040023 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC100038830 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038830
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667280 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 ESTs, 2 Proteins pseudo : _no_value

name	EG667281 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667281 MGI:3649078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins

name	LOC432438 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:432438
definition	note : aconitase 2, mitochondrial, pseudogene pseudo : _no_value

name	Raet1d (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56554 MGI:1861032
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667299 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667299
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC667303 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 15 Proteins pseudo : _no_value

name	LOC100040072 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC100040078 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	Slc2a12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:353169 MGI:3052471
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tbpl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237336 MGI:1339946
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcf21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21412 MGI:1202715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eya4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14051 MGI:1337104
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628133 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260662 GeneID:628133
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC628133 transcript_id : XM_001474214.1

name	Sgk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755489 GeneID:20393 MGI:1340062
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serum/glucocorticoid regulated kinase transcript_id : NM_011361.1

name	4930444G20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94388003 GeneID:114671 MGI:2149738
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 17 Proteins product : RIKEN cDNA 4930444G20 gene transcript_id : XM_125511.6

name	E030030I06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94387933 GeneID:319887 MGI:2442914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 6 ESTs, 1 Protein product : RIKEN cDNA E030030I06 gene, transcript variant 1 transcript_id : XM_286230.5

name	E030030I06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260664 GeneID:319887 MGI:2442914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : RIKEN cDNA E030030I06 gene, transcript variant 3 transcript_id : XM_897935.3

name	Raet1e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130823 GeneID:379043 MGI:2675273
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinoic acid early transcript 1E transcript_id : NM_198193.2

name	LOC100040023 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260654 GeneID:100040023
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : similar to myelin transcription factor 1 transcript_id : XM_001473963.1

name	LOC100038830 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260623 GeneID:100038830
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038830 transcript_id : XM_001471766.1

name	EG667281 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260656 GeneID:667281 MGI:3649078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : predicted gene, EG667281 transcript_id : XM_989538.2

name	Raet1d (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625664 GeneID:56554 MGI:1861032
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinoic acid early transcript delta transcript_id : NM_020030.2

name	LOC100040072 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260658 GeneID:100040072
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : hypothetical protein LOC100040072 transcript_id : XM_001474023.1

name	LOC100040078 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260660 GeneID:100040078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical protein LOC100040078 transcript_id : XM_001474048.1

name	Slc2a12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387928 GeneID:353169 MGI:3052471
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 2 (facilitated glucose transporter), member 12 transcript_id : NM_178934.3

name	Tbpl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142347950 GeneID:237336 MGI:1339946
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TATA box binding protein-like 1 transcript_id : NM_011603.3

name	Tcf21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755731 GeneID:21412 MGI:1202715
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor 21 transcript_id : NM_011545.1

name	Eya4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803013 GeneID:14051 MGI:1337104
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eyes absent 4 homolog (Drosophila) transcript_id : NM_010167.3

name	LOC628133 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260663 GeneID:628133
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474264.1

name	Sgk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755490 CCDS:CCDS23726.1 GeneID:20393 MGI:1340062
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0006974 - response to DNA damage stimulus [Evidence IDA] codon_start : 1 product : serum/glucocorticoid regulated kinase protein_id : NP_035491.1

name	4930444G20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82932393 GeneID:114671 MGI:2149738
definition	codon_start : 1 product : hypothetical protein LOC114671 protein_id : XP_125511.5

name	E030030I06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82932189 GeneID:319887 MGI:2442914
definition	codon_start : 1 product : hypothetical protein LOC319887 isoform 1 protein_id : XP_286230.4

name	E030030I06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260665 GeneID:319887 MGI:2442914
definition	codon_start : 1 product : hypothetical protein LOC319887 isoform 3 protein_id : XP_903028.2

name	Raet1e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38016148 GeneID:379043 MGI:2675273
definition	GO_component : GO:0046658 - anchored to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0046703 - natural killer cell lectin-like receptor binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : Rae-1 epsilon product : retinoic acid early transcript 1E protein_id : NP_937836.1

name	LOC100040023 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260655 GeneID:100040023
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474013.1

name	LOC100038830 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260624 GeneID:100038830
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471816.1

name	EG667281 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260657 GeneID:667281 MGI:3649078
definition	codon_start : 1 product : hypothetical protein protein_id : XP_994632.2

name	Raet1d (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910522 GeneID:56554 MGI:1861032
definition	GO_component : GO:0046658 - anchored to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0046703 - natural killer cell lectin-like receptor binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : retinoic acid early transcript delta protein_id : NP_064414.1

name	LOC100040072 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260659 GeneID:100040072
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474073.1

name	LOC100040078 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260661 GeneID:100040078
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474098.1

name	Slc2a12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725813 CCDS:CCDS23729.1 GeneID:353169 MGI:3052471
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005351 - sugar porter activity [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : facilitated glucose transporter; solute carrier family 2, member 12 product : solute carrier family 2 (facilitated glucose transporter), member 12 protein_id : NP_849265.1

name	Tbpl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755811 CCDS:CCDS23730.1 GeneID:237336 MGI:1339946
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005669 - transcription factor TFIID complex [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003702 - RNA polymerase II transcription factor activity [Evidence IEA]; GO:0005351 - sugar porter activity [Evidence IEA] GO_process : GO:0001675 - acrosome formation [Evidence IMP]; GO:0006235 - dTTP biosynthesis [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence TAS] [Evidence IDA]; GO:0006367 - transcription initiation from RNA polymerase II promoter [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : TBP-related factor 2; TATA box binding protein-like protein; TBP-like protein; TBP-like factor product : TATA box binding protein-like 1 protein_id : NP_035733.1

name	Tcf21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755732 CCDS:CCDS23732.1 GeneID:21412 MGI:1202715
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA] [Evidence TAS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0009887 - organ morphogenesis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007548 - sex differentiation [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : podocyte-expressed 1 product : transcription factor 21 protein_id : NP_035675.1

name	Eya4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61098069 GeneID:14051 MGI:1337104
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : eyes absent 4 homolog protein_id : NP_034297.2

name	LOC667254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667254
definition	number : 6 pseudo : _no_value

name	LOC667254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667254
definition	number : 5 pseudo : _no_value

name	LOC667254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667254
definition	number : 4 pseudo : _no_value

name	LOC667254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667254
definition	number : 3 pseudo : _no_value

name	LOC665523 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665523
definition	number : 1 pseudo : _no_value

name	LOC667254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667254
definition	number : 2 pseudo : _no_value

name	LOC667254 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667254
definition	number : 1 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 1 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 2 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 3 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 4 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 5 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 6 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 7 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 8 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 9 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 10 pseudo : _no_value

name	LOC100039992 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039992
definition	number : 11 pseudo : _no_value

name	LOC665543 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665543
definition	number : 1 pseudo : _no_value

name	LOC667299 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667299
definition	number : 1 pseudo : _no_value

name	LOC667299 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667299
definition	number : 2 pseudo : _no_value

name	LOC667299 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667299
definition	number : 3 pseudo : _no_value

name	LOC667299 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667299
definition	number : 4 pseudo : _no_value

name	LOC667299 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667299
definition	number : 5 pseudo : _no_value

name	LOC667299 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667299
definition	number : 6 pseudo : _no_value

name	LOC667280 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260666 GeneID:667280
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 27 ESTs, 2 Proteins product : similar to high-mobility group box 1 pseudo : _no_value transcript_id : XR_031765.1

name	LOC667303 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149260669 GeneID:667303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 15 Proteins product : similar to high-mobility group box 1 pseudo : _no_value transcript_id : XR_031775.1

clone name	MSMg01-441P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-497P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-187D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404P19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-209G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462J04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-505C15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-235G03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-476B01
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-235G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237K03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-059E12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-274H21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-288A11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-124L23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-065E07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-068J23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-062D20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-274H21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-421B21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-458G12
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-111J09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-152J21
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-280M23
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-505C15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-421H21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-138B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-197J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-210L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-166M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-454B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-406B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-267H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-509E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322P24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-271M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-025C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-278L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-075D21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-310P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-039D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142B03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-173M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-274D13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263P09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099A14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-045K22.T7 (MSMg01no045_k22.b1)	MSMg01-045K22.TJ (MSMg01no045_k22.g1)
ACC	AG276252	AG276253
length	789	902
length of high quality (start - end)	167 (127 - 293)	---
definition	CHROMAT_FILE: MSMg01no045_k22.b1 PHD_FILE: MSMg01no045_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:42 2005	CHROMAT_FILE: MSMg01no045_k22.g1 PHD_FILE: MSMg01no045_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:42 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNNGGGGGGGGGGGGGGNGGGCCGTTGGGTTGTTGTGTGCCTTTATTTCC CCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGATCTCGGC GGAATTCTCCACATTTCCGGAAATGAAATATTTTCTACAAATCTGTACCT TAGCCTCTCATTCTCTCGGAATGTTTTTTTTTCAACAACAGTCATATCTA ACTTTTATGAAATGCCATACTTTAGGAAATTATTACTCTGTTGATATAAG AGGGGTTTACCTAATGTGATATTATAAAAGTTTTCTCTGAGAAGTTTCTG GGCTCTATGTTGAATTAATTTTATGTATAACCCAAGATATGGGTTATATA TATAAAATTCTGGTTTGCTTATATTGTTTGGGTTTTGGGGGTATGTGCGT GTTTGCTGTCACTTCTACCCCCTCTTACCATCCTCGAATTTCCCTTCTAT GTTGCTCCGTCTATATATTCCCCTATTTGTTCTTTATTTCTCCTATCATC TTCTCTCTCCTTACCTCATCTCTTTACCTATCTTCACTTGTACCTACCTA CTCTACTCGAACAATTATTCTACTTCTCGTCAATAATTATTTGTGACTCT ACGCGCAATATCCTCCCCTGTTTCACTATCTAAAGCCTGTGCCACTGCAT GGACTTGGTTATACTTTTGATTTGTATCCCCCCGTCTACCTTAACTCGTG TGTTCAACCACTATCGAATGTTACTTTATATACTTATTAATGTATCTTTC CTTTCTATTACATTCATTTATCACCTTTATTTTTATTCG	NNNNNNNNNNNNNNCCCCNNNNNNNNNNNNNNNNNNTTTTCCCCCNNNNN CCCNNNNNNNNNNNNNNNNNNNTTTTNNNNNTNNCNNTTNNNNNNNTTCT TTTCCTTACTCTTTTTTACTTCTNNCTACTACTNATAAATAACTNTATTT TTATATATTTTATTTTGACTATCTGTTAACCTGTGGTCGATATTTCGTTT CCGATCTGGCGTTGCCCCGGGTCGTCGCCGTCTGGGTGCGTCTCAGCGCT CCCCCTTTCGTTGTCTTTCCTCCCTCCTCGCTACCGTCCGGCAGCCCTTC CGCTCGCGCCCCTCTTTCACCCTGGGACCCGCGCGGCGCGCCCCTCCTTT TGCCATCATATCAATAGAACCGGGTATGATCTCTATTTTCTACTTCTCCA ATACTCTCAGCCTTTATGTTAGCCGCGGGACAATAAAACACCTCCCCGAA GTAAAAGTGGGGTAAGGCCCTGAGGGAGANCGGNCCGGGGTCATGCGGCT CATCTTGANNGNNGAAAACNAAAAAGGAAGGGTATTCTCGCGGAAAAATT AGCGCATCACCCTTTGGGGGGAACACAAAAGGGGAAAAGGGTTCCTAAAA ACAACCCTCCGGGAAACCCCCCGAATCATTGAAGAAGGGACCCCCTATAA CTTAAGGTTTATAAGGGTGGAAGGGGGAGATTTTTCATGGGGGGTACAGA GGTTTAAAAATAAACACCGGGGCCCCCTGGGTGTAAGGGGGAATAAGAAA CATTCCCGAAAAAGCGGGGGGGAACCGCGCTCGGGGGGGAGGAAAAAGGG GGGGGCTATTATATATTGGGGCCCGGGCAAAAAGGGGGTGGGGGGGGAGC GCCCCCGGGGGGGTATATTAATAAAACAAGTCCCGGGAGGGGGGGGGAGT TT
quality values	Open. Hide. 0 0 0 3 7 7 9 9 9 9 9 7 7 8 15 18 3 0 3 6 8 8 8 6 6 6 6 7 6 7 8 8 12 13 21 8 8 6 7 8 8 8 8 13 12 10 8 8 10 8 8 9 10 8 8 13 13 11 24 14 15 15 23 18 16 12 13 13 22 24 28 28 28 33 24 22 28 33 28 28 30 30 27 21 21 11 8 8 7 6 6 6 6 6 8 8 8 9 9 13 17 17 20 18 20 19 28 22 19 8 8 8 8 8 12 8 9 8 8 8 9 14 8 8 8 8 15 14 39 39 42 41 41 53 50 36 36 42 42 36 37 43 50 43 47 47 47 48 48 32 32 20 20 20 31 34 43 42 42 42 48 48 57 57 54 47 47 43 41 42 46 46 41 41 41 46 46 54 57 57 44 19 15 10 10 10 32 34 47 39 37 37 43 39 44 47 57 57 57 57 54 54 54 57 57 57 50 43 43 26 32 32 32 36 37 43 43 48 50 52 57 44 43 31 31 27 28 24 35 37 37 37 37 50 50 52 52 43 43 37 36 43 33 32 35 43 38 24 17 17 24 32 32 35 35 35 35 43 43 52 52 43 43 24 24 22 25 25 37 37 41 47 47 44 44 47 43 43 35 29 29 43 44 44 33 33 33 26 24 12 12 11 24 24 32 18 18 11 15 15 24 24 28 32 36 42 37 37 30 42 32 37 39 57 46 46 42 43 43 43 39 39 39 37 30 30 30 44 32 43 43 40 40 32 32 23 23 28 32 24 24 17 25 25 35 39 47 48 48 48 48 47 48 48 46 46 46 43 48 40 41 34 28 28 15 14 9 9 9 10 15 20 32 30 41 46 48 39 32 24 15 14 14 14 15 28 32 29 29 17 17 14 24 23 12 12 11 11 11 18 21 28 15 15 12 11 11 11 11 11 10 8 8 8 8 8 10 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 10 8 8 8 8 11 11 10 10 10 10 10 9 8 8 8 8 8 8 6 6 6 8 8 10 9 10 13 10 11 10 11 11 10 10 10 10 9 10 8 8 6 6 8 6 10 8 8 8 8 8 8 8 8 8 13 10 11 9 8 10 8 8 8 8 9 10 8 8 8 8 8 6 6 8 6 8 8 9 9 10 10 10 9 9 8 8 10 9 8 8 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 9 8 9 10 8 8 8 8 9 9 10 8 8 8 6 6 8 6 6 8 8 8 8 8 9 8 8 6 7 8 8 10 12 11 11 8 8 8 8 6 6 8 10 11 8 8 8 8 8 8 8 8 8 8 8 8 11 8 8 6 6 8 8 9 10 8 8 8 8 8 8 8 8 10 11 11 11 8 8 8 8 8 8 10 8 10 7 7 8 8 9 10 12 8 8 6 6 8 8 9 8 8 8 8 8 9 11 11 9 9 9 9 11 11 12 9 13 10 10 10 10 11 11 12 11 11 13 11 8 8 8 10 8 11 9 9 9 14 9 9 9 10 10 8 8 6 6 6 6 8 8 10 9 8 8 6 6 6 6 6 6 8 8 9 9 9 9 9 10 10 10 10 8 8 6 6 8 8 10 10 9 13 14 8 8 8 8 8 8 8 10 11 11 11 11 11 11 11 11 12 12 12 9 9 9 10 10 10 10 8 10 8 8 8 8 10 10 10 8 8 8 8 8 8 8 10 8 10 10 11 8 8 8 10 8 8 8 8 8 8 10 10 10 9 9	Open. Hide. 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 7 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 7 9 9 6 6 7 3 0 0 0 0 0 3 8 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 7 7 3 0 0 0 0 0 3 0 0 3 0 0 3 3 0 0 0 0 0 0 0 3 8 6 8 9 9 9 9 17 8 10 12 12 12 12 15 19 15 9 18 7 7 8 8 8 17 3 0 0 3 10 10 8 8 10 10 3 0 3 6 8 8 8 8 8 8 10 3 0 3 7 8 13 17 20 30 22 21 9 9 9 9 9 8 8 13 13 15 22 9 10 8 8 8 8 6 7 7 10 10 10 9 9 8 8 8 8 8 8 6 6 8 8 8 6 6 8 8 9 10 10 8 8 8 7 7 12 10 8 8 8 8 8 8 10 10 8 8 10 8 8 6 6 8 8 8 8 8 10 6 6 8 8 8 8 6 6 8 8 8 8 8 10 6 6 6 6 6 6 7 8 10 10 13 22 23 8 8 6 6 8 10 8 11 11 10 7 7 8 11 12 12 10 10 8 8 8 8 8 8 10 8 8 8 10 8 8 11 11 11 12 10 10 8 8 8 8 8 8 8 8 8 8 8 6 6 7 8 7 7 11 10 10 8 10 10 9 9 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 6 8 10 8 8 8 8 8 8 9 11 12 8 9 8 8 8 8 10 8 8 8 10 8 8 8 10 8 8 8 8 8 8 11 12 12 10 6 6 6 6 8 8 8 8 8 8 8 9 9 10 9 9 9 10 10 10 10 9 10 10 11 11 11 11 17 11 11 11 15 8 8 8 8 8 8 8 6 6 6 6 8 8 11 8 8 8 8 8 8 8 10 8 8 8 8 8 10 8 9 8 8 8 11 8 15 6 6 6 6 8 6 6 7 9 9 11 10 10 10 10 10 12 13 10 10 9 9 10 10 13 12 9 6 6 6 7 7 6 6 9 3 0 3 8 3 0 3 7 7 9 9 6 6 6 6 6 6 6 6 8 7 6 6 8 8 6 6 9 9 3 0 0 3 0 0 3 8 8 10 12 3 0 3 16 13 21 9 9 8 19 13 8 7 8 6 6 6 6 6 10 10 10 12 11 11 11 19 15 17 11 6 6 6 7 7 9 9 12 14 13 19 10 14 11 11 11 13 12 22 17 11 8 8 6 6 6 6 6 6 10 17 28 26 24 25 28 30 22 23 14 14 8 8 11 8 8 8 8 8 8 12 8 8 8 10 10 10 10 10 10 9 9 9 10 9 9 9 11 15 11 10 10 10 15 10 11 9 8 8 10 6 6 6 6 8 8 10 10 10 15 11 11 10 10 11 10 7 6 6 6 8 8 15 13 15 15 13 11 12 11 10 10 8 8 9 10 8 8 8 8 8 6 8 7 8 13 15 15 13 11 9 9 9 15 10 11 11 10 10 9 9 10 11 9 9 6 8 6 6 6 7 8 9 8 13 10 11 10 16 17 13 6 6 6 8 8 8 8 8 8 10 11 11 9 12 10 10 10 10 10 8 13 6 6 6 8 10 11 11 13 7 7 6 6 8 8 9 9 9 10 13 12 11 10 10 18 9 9 9 10 10 10 13 11 8 8 8 8 9 11 14 21 16 9 9 9 9 9 8 9 9 7 7 7 9 10 11 22 21 22 9 9 9 8 8 9 11 10 10 15 19 28 16 11 10 8 8 8 8 8 8 8 8 10 12 16 12 10 10 9 8 8 8 8 8 8 8 10 8 8 8 12 14 16 14 13 10 16 8 10 8 8 12 12 22 24 8 8 8 8 8 8 8 8 8 8 8 9 10 9 11 16 10 10 8 8 6 6 6 8 8 13 16 16 20 10 10 9 9 9 9 9 9 9 10 10 6 6 6 6 6 13 21 20 19 16 8 8 8 6 6 6 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no045_k22.b1 MSMg01no045_k22.b1 CHROMAT_FILE:
MSMg01no045_k22.b1 PHD_FILE: MSMg01no045_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:42 2005
         (167 letters)



>mm_chr10_22489589_22490157
          Length = 569

 Score =  296 bits (153), Expect = 5e-85
 Identities = 165/169 (97%), Gaps = 2/169 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatattttctacaaatctgtaccttagcctctcattctctcggaatg-tttttttttc-a 58
           |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
Sbjct: 369 aatattttctacaaatctgtaccttagcctctcattctcttggaatgttttttttttcaa 310

                                                                       
Query: 59  acaacagtcatatctaacttttatgaaatgccatactttaggaaattattactctgttga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acaacagtcatatctaacttttatgaaatgccatactttaggaaattattactctgttga 250

                                                            
Query: 119 tataagaggggtttacctaatgtgatattataaaagttttctctgagaa 167
           |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tataagagggatttacctaatgtgatattataaaagttttctctgagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 569
Length adjustment: 8
Effective length of query: 159
Effective length of database: 561
Effective search space:    89199
Effective search space used:    89199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information